data_6CML # _model_server_result.job_id xzF3pscpY7D9j5MGdpAgww _model_server_result.datetime_utc '2024-12-28 09:34:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cml # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":800}' # _entry.id 6CML # _exptl.entry_id 6CML _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 149.211 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CML _cell.length_a 87.64 _cell.length_b 106.23 _cell.length_c 208.28 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CML _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F 1 1 B,D,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H11 N O2 S' _chem_comp.formula_weight 149.211 _chem_comp.id MET _chem_comp.mon_nstd_flag y _chem_comp.name METHIONINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA MET sing 282 n n N H MET sing 283 n n N H2 MET sing 284 n n CA C MET sing 285 n n CA CB MET sing 286 n n CA HA MET sing 287 n n C O MET doub 288 n n C OXT MET sing 289 n n CB CG MET sing 290 n n CB HB2 MET sing 291 n n CB HB3 MET sing 292 n n CG SD MET sing 293 n n CG HG2 MET sing 294 n n CG HG3 MET sing 295 n n SD CE MET sing 296 n n CE HE1 MET sing 297 n n CE HE2 MET sing 298 n n CE HE3 MET sing 299 n n OXT HXT MET sing 300 n n # _atom_sites.entry_id 6CML _atom_sites.fract_transf_matrix[1][1] 0.01141 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009414 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004801 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MET A 1 800 800 MET MET . D 3 96S B 1 801 801 96S 96S . E 4 GOL B 1 802 802 GOL GOL . F 5 HOH A 1 901 901 HOH HOH . F 5 HOH A 2 902 902 HOH HOH . F 5 HOH A 3 903 903 HOH HOH . F 5 HOH A 4 904 904 HOH HOH . F 5 HOH A 5 905 905 HOH HOH . F 5 HOH A 6 906 906 HOH HOH . F 5 HOH A 7 907 907 HOH HOH . F 5 HOH A 8 908 908 HOH HOH . F 5 HOH A 9 909 909 HOH HOH . F 5 HOH A 10 910 910 HOH HOH . F 5 HOH A 11 911 911 HOH HOH . F 5 HOH A 12 912 912 HOH HOH . F 5 HOH A 13 913 913 HOH HOH . F 5 HOH A 14 914 914 HOH HOH . F 5 HOH A 15 915 915 HOH HOH . F 5 HOH A 16 916 916 HOH HOH . F 5 HOH A 17 917 917 HOH HOH . F 5 HOH A 18 918 918 HOH HOH . F 5 HOH A 19 919 919 HOH HOH . F 5 HOH A 20 920 920 HOH HOH . F 5 HOH A 21 921 921 HOH HOH . F 5 HOH A 22 922 922 HOH HOH . F 5 HOH A 23 923 923 HOH HOH . F 5 HOH A 24 924 924 HOH HOH . F 5 HOH A 25 925 925 HOH HOH . F 5 HOH A 26 926 926 HOH HOH . F 5 HOH A 27 927 927 HOH HOH . F 5 HOH A 28 928 928 HOH HOH . F 5 HOH A 29 929 929 HOH HOH . F 5 HOH A 30 930 930 HOH HOH . F 5 HOH A 31 931 931 HOH HOH . F 5 HOH A 32 932 932 HOH HOH . F 5 HOH A 33 933 933 HOH HOH . F 5 HOH A 34 934 934 HOH HOH . F 5 HOH A 35 935 935 HOH HOH . F 5 HOH A 36 936 936 HOH HOH . F 5 HOH A 37 937 937 HOH HOH . F 5 HOH A 38 938 938 HOH HOH . F 5 HOH A 39 939 939 HOH HOH . F 5 HOH A 40 940 940 HOH HOH . F 5 HOH A 41 941 941 HOH HOH . F 5 HOH A 42 942 942 HOH HOH . F 5 HOH A 43 943 943 HOH HOH . F 5 HOH A 44 944 944 HOH HOH . F 5 HOH A 45 945 945 HOH HOH . F 5 HOH A 46 946 946 HOH HOH . F 5 HOH A 47 947 947 HOH HOH . F 5 HOH A 48 948 948 HOH HOH . F 5 HOH A 49 949 949 HOH HOH . F 5 HOH A 50 950 950 HOH HOH . F 5 HOH A 51 951 951 HOH HOH . F 5 HOH A 52 952 952 HOH HOH . F 5 HOH A 53 953 953 HOH HOH . F 5 HOH A 54 954 954 HOH HOH . F 5 HOH A 55 955 955 HOH HOH . F 5 HOH A 56 956 956 HOH HOH . F 5 HOH A 57 957 957 HOH HOH . F 5 HOH A 58 958 958 HOH HOH . F 5 HOH A 59 959 959 HOH HOH . F 5 HOH A 60 960 960 HOH HOH . F 5 HOH A 61 961 961 HOH HOH . F 5 HOH A 62 962 962 HOH HOH . F 5 HOH A 63 963 963 HOH HOH . F 5 HOH A 64 964 964 HOH HOH . F 5 HOH A 65 965 965 HOH HOH . F 5 HOH A 66 966 966 HOH HOH . F 5 HOH A 67 967 967 HOH HOH . F 5 HOH A 68 968 968 HOH HOH . F 5 HOH A 69 969 969 HOH HOH . F 5 HOH A 70 970 970 HOH HOH . F 5 HOH A 71 971 971 HOH HOH . F 5 HOH A 72 972 972 HOH HOH . F 5 HOH A 73 973 973 HOH HOH . F 5 HOH A 74 974 974 HOH HOH . F 5 HOH A 75 975 975 HOH HOH . F 5 HOH A 76 976 976 HOH HOH . G 5 HOH B 1 901 901 HOH HOH . G 5 HOH B 2 902 902 HOH HOH . G 5 HOH B 3 903 903 HOH HOH . G 5 HOH B 4 904 904 HOH HOH . G 5 HOH B 5 905 905 HOH HOH . G 5 HOH B 6 906 906 HOH HOH . G 5 HOH B 7 907 907 HOH HOH . G 5 HOH B 8 908 908 HOH HOH . G 5 HOH B 9 909 909 HOH HOH . G 5 HOH B 10 910 910 HOH HOH . G 5 HOH B 11 911 911 HOH HOH . G 5 HOH B 12 912 912 HOH HOH . G 5 HOH B 13 913 913 HOH HOH . G 5 HOH B 14 914 914 HOH HOH . G 5 HOH B 15 915 915 HOH HOH . G 5 HOH B 16 916 916 HOH HOH . G 5 HOH B 17 917 917 HOH HOH . G 5 HOH B 18 918 918 HOH HOH . G 5 HOH B 19 919 919 HOH HOH . G 5 HOH B 20 920 920 HOH HOH . G 5 HOH B 21 921 921 HOH HOH . G 5 HOH B 22 922 922 HOH HOH . G 5 HOH B 23 923 923 HOH HOH . G 5 HOH B 24 924 924 HOH HOH . G 5 HOH B 25 925 925 HOH HOH . G 5 HOH B 26 926 926 HOH HOH . G 5 HOH B 27 927 927 HOH HOH . G 5 HOH B 28 928 928 HOH HOH . G 5 HOH B 29 929 929 HOH HOH . G 5 HOH B 30 930 930 HOH HOH . G 5 HOH B 31 931 931 HOH HOH . G 5 HOH B 32 932 932 HOH HOH . G 5 HOH B 33 933 933 HOH HOH . G 5 HOH B 34 934 934 HOH HOH . G 5 HOH B 35 935 935 HOH HOH . G 5 HOH B 36 936 936 HOH HOH . G 5 HOH B 37 937 937 HOH HOH . G 5 HOH B 38 938 938 HOH HOH . G 5 HOH B 39 939 939 HOH HOH . G 5 HOH B 40 940 940 HOH HOH . G 5 HOH B 41 941 941 HOH HOH . G 5 HOH B 42 942 942 HOH HOH . G 5 HOH B 43 943 943 HOH HOH . G 5 HOH B 44 944 944 HOH HOH . G 5 HOH B 45 945 945 HOH HOH . G 5 HOH B 46 946 946 HOH HOH . G 5 HOH B 47 947 947 HOH HOH . G 5 HOH B 48 948 948 HOH HOH . G 5 HOH B 49 949 949 HOH HOH . G 5 HOH B 50 950 950 HOH HOH . G 5 HOH B 51 951 951 HOH HOH . G 5 HOH B 52 952 952 HOH HOH . G 5 HOH B 53 953 953 HOH HOH . G 5 HOH B 54 954 954 HOH HOH . G 5 HOH B 55 955 955 HOH HOH . G 5 HOH B 56 956 956 HOH HOH . G 5 HOH B 57 957 957 HOH HOH . G 5 HOH B 58 958 958 HOH HOH . G 5 HOH B 59 959 959 HOH HOH . G 5 HOH B 60 960 960 HOH HOH . G 5 HOH B 61 961 961 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N MET . . . C 2 -7.491 -15.393 -55.488 1 45.05 ? N MET 800 A 1 HETATM 2 C CA MET . . . C 2 -7.48 -15.694 -54.031 1 44.16 ? CA MET 800 A 1 HETATM 3 C C MET . . . C 2 -8.868 -16.126 -53.564 1 44.9 ? C MET 800 A 1 HETATM 4 O O MET . . . C 2 -9.898 -16.019 -54.261 1 40.27 ? O MET 800 A 1 HETATM 5 C CB MET . . . C 2 -7.047 -14.462 -53.22 1 44.18 ? CB MET 800 A 1 HETATM 6 C CG MET . . . C 2 -5.811 -13.744 -53.742 1 43.96 ? CG MET 800 A 1 HETATM 7 S SD MET . . . C 2 -5.361 -12.313 -52.752 1 42.84 ? SD MET 800 A 1 HETATM 8 C CE MET . . . C 2 -3.622 -12.15 -53.196 1 43.39 ? CE MET 800 A 1 HETATM 9 O OXT MET . . . C 2 -8.966 -16.572 -52.418 1 48.73 ? OXT MET 800 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 9 #