data_6CML
#
_model_server_result.job_id            D3J8YlXaNQIEL7YxpW4woQ 
_model_server_result.datetime_utc      '2024-12-28 08:55:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6cml 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":801}' 
#
_entry.id    6CML 
#
_exptl.entry_id    6CML 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              432.303 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-[(5-chloro-1H-imidazo[4,5-b]pyridin-2-yl)methyl]-4-[(2-chloro-4-methoxyphenyl)methyl]-3-ethyl-1,3-dihydro-2H-imidazol-2-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6CML 
_cell.length_a            87.64 
_cell.length_b            106.23 
_cell.length_c            208.28 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6CML 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,F 1 1 
B,D,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H19 Cl2 N5 O2' 
_chem_comp.formula_weight    432.303 
_chem_comp.id                96S 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-[(5-chloro-1H-imidazo[4,5-b]pyridin-2-yl)methyl]-4-[(2-chloro-4-methoxyphenyl)methyl]-3-ethyl-1,3-dihydro-2H-imidazol-2-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 96S sing 1 n n 
C3 C4 96S sing 2 n n 
C3 C2 96S sing 3 n n 
CL C10 96S sing 4 n n 
C10 C4 96S doub 5 n y 
C10 C9 96S sing 6 n y 
C4 C5 96S sing 7 n y 
C9 C7 96S doub 8 n y 
C5 C6 96S doub 9 n y 
C1 N 96S sing 10 n n 
C7 C6 96S sing 11 n y 
C7 O 96S sing 12 n n 
O C8 96S sing 13 n n 
C2 N 96S sing 14 n n 
C2 C11 96S doub 15 n n 
N C19 96S sing 16 n n 
C11 N1 96S sing 17 n n 
C19 O1 96S doub 18 n n 
C19 N1 96S sing 19 n n 
N1 C12 96S sing 20 n n 
C12 C13 96S sing 21 n n 
C13 N4 96S sing 22 n y 
C13 N2 96S doub 23 n y 
N4 C18 96S sing 24 n y 
N2 C14 96S sing 25 n y 
C18 C14 96S doub 26 n y 
C18 C17 96S sing 27 n y 
C14 N3 96S sing 28 n y 
C17 C16 96S doub 29 n y 
N3 C15 96S doub 30 n y 
C16 C15 96S sing 31 n y 
C15 CL1 96S sing 32 n n 
C1 H1 96S sing 33 n n 
C1 H2 96S sing 34 n n 
C H3 96S sing 35 n n 
C H4 96S sing 36 n n 
C H5 96S sing 37 n n 
C12 H6 96S sing 38 n n 
C12 H7 96S sing 39 n n 
N4 H8 96S sing 40 n n 
C17 H9 96S sing 41 n n 
C16 H10 96S sing 42 n n 
C11 H12 96S sing 43 n n 
C3 H13 96S sing 44 n n 
C3 H14 96S sing 45 n n 
C9 H15 96S sing 46 n n 
C8 H16 96S sing 47 n n 
C8 H17 96S sing 48 n n 
C8 H18 96S sing 49 n n 
C6 H19 96S sing 50 n n 
C5 H20 96S sing 51 n n 
#
_atom_sites.entry_id                     6CML 
_atom_sites.fract_transf_matrix[1][1]    0.01141 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009414 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004801 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MET A 1 800 800 MET MET . 
D 3 96S B 1 801 801 96S 96S . 
E 4 GOL B 1 802 802 GOL GOL . 
F 5 HOH A 1 901 901 HOH HOH . 
F 5 HOH A 2 902 902 HOH HOH . 
F 5 HOH A 3 903 903 HOH HOH . 
F 5 HOH A 4 904 904 HOH HOH . 
F 5 HOH A 5 905 905 HOH HOH . 
F 5 HOH A 6 906 906 HOH HOH . 
F 5 HOH A 7 907 907 HOH HOH . 
F 5 HOH A 8 908 908 HOH HOH . 
F 5 HOH A 9 909 909 HOH HOH . 
F 5 HOH A 10 910 910 HOH HOH . 
F 5 HOH A 11 911 911 HOH HOH . 
F 5 HOH A 12 912 912 HOH HOH . 
F 5 HOH A 13 913 913 HOH HOH . 
F 5 HOH A 14 914 914 HOH HOH . 
F 5 HOH A 15 915 915 HOH HOH . 
F 5 HOH A 16 916 916 HOH HOH . 
F 5 HOH A 17 917 917 HOH HOH . 
F 5 HOH A 18 918 918 HOH HOH . 
F 5 HOH A 19 919 919 HOH HOH . 
F 5 HOH A 20 920 920 HOH HOH . 
F 5 HOH A 21 921 921 HOH HOH . 
F 5 HOH A 22 922 922 HOH HOH . 
F 5 HOH A 23 923 923 HOH HOH . 
F 5 HOH A 24 924 924 HOH HOH . 
F 5 HOH A 25 925 925 HOH HOH . 
F 5 HOH A 26 926 926 HOH HOH . 
F 5 HOH A 27 927 927 HOH HOH . 
F 5 HOH A 28 928 928 HOH HOH . 
F 5 HOH A 29 929 929 HOH HOH . 
F 5 HOH A 30 930 930 HOH HOH . 
F 5 HOH A 31 931 931 HOH HOH . 
F 5 HOH A 32 932 932 HOH HOH . 
F 5 HOH A 33 933 933 HOH HOH . 
F 5 HOH A 34 934 934 HOH HOH . 
F 5 HOH A 35 935 935 HOH HOH . 
F 5 HOH A 36 936 936 HOH HOH . 
F 5 HOH A 37 937 937 HOH HOH . 
F 5 HOH A 38 938 938 HOH HOH . 
F 5 HOH A 39 939 939 HOH HOH . 
F 5 HOH A 40 940 940 HOH HOH . 
F 5 HOH A 41 941 941 HOH HOH . 
F 5 HOH A 42 942 942 HOH HOH . 
F 5 HOH A 43 943 943 HOH HOH . 
F 5 HOH A 44 944 944 HOH HOH . 
F 5 HOH A 45 945 945 HOH HOH . 
F 5 HOH A 46 946 946 HOH HOH . 
F 5 HOH A 47 947 947 HOH HOH . 
F 5 HOH A 48 948 948 HOH HOH . 
F 5 HOH A 49 949 949 HOH HOH . 
F 5 HOH A 50 950 950 HOH HOH . 
F 5 HOH A 51 951 951 HOH HOH . 
F 5 HOH A 52 952 952 HOH HOH . 
F 5 HOH A 53 953 953 HOH HOH . 
F 5 HOH A 54 954 954 HOH HOH . 
F 5 HOH A 55 955 955 HOH HOH . 
F 5 HOH A 56 956 956 HOH HOH . 
F 5 HOH A 57 957 957 HOH HOH . 
F 5 HOH A 58 958 958 HOH HOH . 
F 5 HOH A 59 959 959 HOH HOH . 
F 5 HOH A 60 960 960 HOH HOH . 
F 5 HOH A 61 961 961 HOH HOH . 
F 5 HOH A 62 962 962 HOH HOH . 
F 5 HOH A 63 963 963 HOH HOH . 
F 5 HOH A 64 964 964 HOH HOH . 
F 5 HOH A 65 965 965 HOH HOH . 
F 5 HOH A 66 966 966 HOH HOH . 
F 5 HOH A 67 967 967 HOH HOH . 
F 5 HOH A 68 968 968 HOH HOH . 
F 5 HOH A 69 969 969 HOH HOH . 
F 5 HOH A 70 970 970 HOH HOH . 
F 5 HOH A 71 971 971 HOH HOH . 
F 5 HOH A 72 972 972 HOH HOH . 
F 5 HOH A 73 973 973 HOH HOH . 
F 5 HOH A 74 974 974 HOH HOH . 
F 5 HOH A 75 975 975 HOH HOH . 
F 5 HOH A 76 976 976 HOH HOH . 
G 5 HOH B 1 901 901 HOH HOH . 
G 5 HOH B 2 902 902 HOH HOH . 
G 5 HOH B 3 903 903 HOH HOH . 
G 5 HOH B 4 904 904 HOH HOH . 
G 5 HOH B 5 905 905 HOH HOH . 
G 5 HOH B 6 906 906 HOH HOH . 
G 5 HOH B 7 907 907 HOH HOH . 
G 5 HOH B 8 908 908 HOH HOH . 
G 5 HOH B 9 909 909 HOH HOH . 
G 5 HOH B 10 910 910 HOH HOH . 
G 5 HOH B 11 911 911 HOH HOH . 
G 5 HOH B 12 912 912 HOH HOH . 
G 5 HOH B 13 913 913 HOH HOH . 
G 5 HOH B 14 914 914 HOH HOH . 
G 5 HOH B 15 915 915 HOH HOH . 
G 5 HOH B 16 916 916 HOH HOH . 
G 5 HOH B 17 917 917 HOH HOH . 
G 5 HOH B 18 918 918 HOH HOH . 
G 5 HOH B 19 919 919 HOH HOH . 
G 5 HOH B 20 920 920 HOH HOH . 
G 5 HOH B 21 921 921 HOH HOH . 
G 5 HOH B 22 922 922 HOH HOH . 
G 5 HOH B 23 923 923 HOH HOH . 
G 5 HOH B 24 924 924 HOH HOH . 
G 5 HOH B 25 925 925 HOH HOH . 
G 5 HOH B 26 926 926 HOH HOH . 
G 5 HOH B 27 927 927 HOH HOH . 
G 5 HOH B 28 928 928 HOH HOH . 
G 5 HOH B 29 929 929 HOH HOH . 
G 5 HOH B 30 930 930 HOH HOH . 
G 5 HOH B 31 931 931 HOH HOH . 
G 5 HOH B 32 932 932 HOH HOH . 
G 5 HOH B 33 933 933 HOH HOH . 
G 5 HOH B 34 934 934 HOH HOH . 
G 5 HOH B 35 935 935 HOH HOH . 
G 5 HOH B 36 936 936 HOH HOH . 
G 5 HOH B 37 937 937 HOH HOH . 
G 5 HOH B 38 938 938 HOH HOH . 
G 5 HOH B 39 939 939 HOH HOH . 
G 5 HOH B 40 940 940 HOH HOH . 
G 5 HOH B 41 941 941 HOH HOH . 
G 5 HOH B 42 942 942 HOH HOH . 
G 5 HOH B 43 943 943 HOH HOH . 
G 5 HOH B 44 944 944 HOH HOH . 
G 5 HOH B 45 945 945 HOH HOH . 
G 5 HOH B 46 946 946 HOH HOH . 
G 5 HOH B 47 947 947 HOH HOH . 
G 5 HOH B 48 948 948 HOH HOH . 
G 5 HOH B 49 949 949 HOH HOH . 
G 5 HOH B 50 950 950 HOH HOH . 
G 5 HOH B 51 951 951 HOH HOH . 
G 5 HOH B 52 952 952 HOH HOH . 
G 5 HOH B 53 953 953 HOH HOH . 
G 5 HOH B 54 954 954 HOH HOH . 
G 5 HOH B 55 955 955 HOH HOH . 
G 5 HOH B 56 956 956 HOH HOH . 
G 5 HOH B 57 957 957 HOH HOH . 
G 5 HOH B 58 958 958 HOH HOH . 
G 5 HOH B 59 959 959 HOH HOH . 
G 5 HOH B 60 960 960 HOH HOH . 
G 5 HOH B 61 961 961 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 CL CL 96S . . . D 3 -41.193 17.002 7.044 1 75.22 ? CL 96S 801 B 1 
HETATM 2 O O1 96S . . . D 3 -45.92 13.291 9.888 1 57.76 ? O1 96S 801 B 1 
HETATM 3 C C19 96S . . . D 3 -44.785 13.427 9.496 1 57.77 ? C19 96S 801 B 1 
HETATM 4 N N 96S . . . D 3 -44.395 13.89 8.272 1 59.83 ? N 96S 801 B 1 
HETATM 5 C C1 96S . . . D 3 -45.343 14.368 7.264 1 61.87 ? C1 96S 801 B 1 
HETATM 6 C C 96S . . . D 3 -45.892 13.246 6.465 1 64.72 ? C 96S 801 B 1 
HETATM 7 N N1 96S . . . D 3 -43.656 13.112 10.163 1 55.69 ? N1 96S 801 B 1 
HETATM 8 C C12 96S . . . D 3 -43.672 12.579 11.515 1 55.01 ? C12 96S 801 B 1 
HETATM 9 C C13 96S . . . D 3 -43.584 13.642 12.554 1 54.06 ? C13 96S 801 B 1 
HETATM 10 N N4 96S . . . D 3 -42.44 14.287 12.834 1 52.88 ? N4 96S 801 B 1 
HETATM 11 C C18 96S . . . D 3 -42.736 15.227 13.782 1 56.24 ? C18 96S 801 B 1 
HETATM 12 C C17 96S . . . D 3 -42 16.222 14.403 1 56.97 ? C17 96S 801 B 1 
HETATM 13 C C16 96S . . . D 3 -42.667 17.052 15.275 1 54.44 ? C16 96S 801 B 1 
HETATM 14 C C15 96S . . . D 3 -44.001 16.822 15.46 1 53.9 ? C15 96S 801 B 1 
HETATM 15 CL CL1 96S . . . D 3 -44.885 17.838 16.545 1 56.57 ? CL1 96S 801 B 1 
HETATM 16 N N3 96S . . . D 3 -44.714 15.879 14.873 1 53.6 ? N3 96S 801 B 1 
HETATM 17 C C14 96S . . . D 3 -44.055 15.089 14.025 1 56.31 ? C14 96S 801 B 1 
HETATM 18 N N2 96S . . . D 3 -44.598 14.086 13.26 1 54.03 ? N2 96S 801 B 1 
HETATM 19 C C11 96S . . . D 3 -42.613 13.372 9.356 1 54.28 ? C11 96S 801 B 1 
HETATM 20 C C2 96S . . . D 3 -43.043 13.842 8.177 1 55.17 ? C2 96S 801 B 1 
HETATM 21 C C3 96S . . . D 3 -42.306 14.187 6.92 1 54.35 ? C3 96S 801 B 1 
HETATM 22 C C4 96S . . . D 3 -40.814 14.346 7.086 1 53.01 ? C4 96S 801 B 1 
HETATM 23 C C10 96S . . . D 3 -40.214 15.594 7.082 1 54.86 ? C10 96S 801 B 1 
HETATM 24 C C9 96S . . . D 3 -38.856 15.763 7.187 1 50.9 ? C9 96S 801 B 1 
HETATM 25 C C7 96S . . . D 3 -38.052 14.656 7.344 1 48.11 ? C7 96S 801 B 1 
HETATM 26 O O 96S . . . D 3 -36.713 14.698 7.583 1 51.38 ? O 96S 801 B 1 
HETATM 27 C C8 96S . . . D 3 -36.057 15.954 7.584 1 52.36 ? C8 96S 801 B 1 
HETATM 28 C C6 96S . . . D 3 -38.609 13.399 7.352 1 47.06 ? C6 96S 801 B 1 
HETATM 29 C C5 96S . . . D 3 -39.975 13.25 7.223 1 49.07 ? C5 96S 801 B 1 
#
_model_server_stats.io_time_ms              73 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           29 
#