data_6CMS # _model_server_result.job_id kLFeUx0aPLi8atHPSDjv4w _model_server_result.datetime_utc '2025-07-13 17:17:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cms # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 6CMS # _exptl.entry_id 6CMS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 352.262 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-(4-azanyl-4-methyl-piperidin-1-yl)-3-[2,3-bis(chloranyl)phenyl]pyrazin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CMS _cell.length_a 40.715 _cell.length_b 54.141 _cell.length_c 218.847 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CMS _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (z,x,y)' _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H19 Cl2 N5' _chem_comp.formula_weight 352.262 _chem_comp.id 5OD _chem_comp.mon_nstd_flag . _chem_comp.name 6-(4-azanyl-4-methyl-piperidin-1-yl)-3-[2,3-bis(chloranyl)phenyl]pyrazin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SHP099 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C23 C12 5OD sing 1 n n C14 C13 5OD sing 2 n n C14 N9 5OD sing 3 n n C13 C12 5OD sing 4 n n N9 C10 5OD sing 5 n n N9 C4 5OD sing 6 n n C12 C11 5OD sing 7 n n C12 N22 5OD sing 8 n n C10 C11 5OD sing 9 n n C3 C4 5OD doub 10 n y C3 N2 5OD sing 11 n y C4 N5 5OD sing 12 n y N2 C1 5OD doub 13 n y N5 C6 5OD doub 14 n y C19 C18 5OD doub 15 n y C19 C8 5OD sing 16 n y C1 C6 5OD sing 17 n y C1 C8 5OD sing 18 n n C18 C17 5OD sing 19 n y C6 N7 5OD sing 20 n n C8 C15 5OD doub 21 n y C17 C16 5OD doub 22 n y C15 C16 5OD sing 23 n y C15 CL1 5OD sing 24 n n C16 CL2 5OD sing 25 n n C3 H1 5OD sing 26 n n C11 H2 5OD sing 27 n n C11 H3 5OD sing 28 n n C13 H4 5OD sing 29 n n C13 H5 5OD sing 30 n n C14 H6 5OD sing 31 n n C14 H7 5OD sing 32 n n C17 H8 5OD sing 33 n n C18 H9 5OD sing 34 n n C19 H10 5OD sing 35 n n C23 H11 5OD sing 36 n n C23 H12 5OD sing 37 n n C23 H13 5OD sing 38 n n N7 H14 5OD sing 39 n n N7 H15 5OD sing 40 n n C10 H16 5OD sing 41 n n C10 H17 5OD sing 42 n n N22 H18 5OD sing 43 n n N22 H19 5OD sing 44 n n # _atom_sites.entry_id 6CMS _atom_sites.fract_transf_matrix[1][1] 0.024561 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01847 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004569 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5OD A 1 601 601 5OD 5OD . C 3 HOH A 1 701 22 HOH HOH . C 3 HOH A 2 702 17 HOH HOH . C 3 HOH A 3 703 62 HOH HOH . C 3 HOH A 4 704 33 HOH HOH . C 3 HOH A 5 705 67 HOH HOH . C 3 HOH A 6 706 25 HOH HOH . C 3 HOH A 7 707 44 HOH HOH . C 3 HOH A 8 708 5 HOH HOH . C 3 HOH A 9 709 30 HOH HOH . C 3 HOH A 10 710 64 HOH HOH . C 3 HOH A 11 711 38 HOH HOH . C 3 HOH A 12 712 59 HOH HOH . C 3 HOH A 13 713 34 HOH HOH . C 3 HOH A 14 714 32 HOH HOH . C 3 HOH A 15 715 47 HOH HOH . C 3 HOH A 16 716 26 HOH HOH . C 3 HOH A 17 717 39 HOH HOH . C 3 HOH A 18 718 4 HOH HOH . C 3 HOH A 19 719 24 HOH HOH . C 3 HOH A 20 720 37 HOH HOH . C 3 HOH A 21 721 1 HOH HOH . C 3 HOH A 22 722 9 HOH HOH . C 3 HOH A 23 723 27 HOH HOH . C 3 HOH A 24 724 19 HOH HOH . C 3 HOH A 25 725 7 HOH HOH . C 3 HOH A 26 726 6 HOH HOH . C 3 HOH A 27 727 43 HOH HOH . C 3 HOH A 28 728 3 HOH HOH . C 3 HOH A 29 729 16 HOH HOH . C 3 HOH A 30 730 52 HOH HOH . C 3 HOH A 31 731 20 HOH HOH . C 3 HOH A 32 732 51 HOH HOH . C 3 HOH A 33 733 31 HOH HOH . C 3 HOH A 34 734 35 HOH HOH . C 3 HOH A 35 735 42 HOH HOH . C 3 HOH A 36 736 58 HOH HOH . C 3 HOH A 37 737 45 HOH HOH . C 3 HOH A 38 738 28 HOH HOH . C 3 HOH A 39 739 12 HOH HOH . C 3 HOH A 40 740 23 HOH HOH . C 3 HOH A 41 741 2 HOH HOH . C 3 HOH A 42 742 46 HOH HOH . C 3 HOH A 43 743 11 HOH HOH . C 3 HOH A 44 744 69 HOH HOH . C 3 HOH A 45 745 63 HOH HOH . C 3 HOH A 46 746 57 HOH HOH . C 3 HOH A 47 747 14 HOH HOH . C 3 HOH A 48 748 70 HOH HOH . C 3 HOH A 49 749 68 HOH HOH . C 3 HOH A 50 750 48 HOH HOH . C 3 HOH A 51 751 15 HOH HOH . C 3 HOH A 52 752 36 HOH HOH . C 3 HOH A 53 753 8 HOH HOH . C 3 HOH A 54 754 18 HOH HOH . C 3 HOH A 55 755 50 HOH HOH . C 3 HOH A 56 756 54 HOH HOH . C 3 HOH A 57 757 29 HOH HOH . C 3 HOH A 58 758 55 HOH HOH . C 3 HOH A 59 759 13 HOH HOH . C 3 HOH A 60 760 41 HOH HOH . C 3 HOH A 61 761 10 HOH HOH . C 3 HOH A 62 762 49 HOH HOH . C 3 HOH A 63 763 53 HOH HOH . C 3 HOH A 64 764 61 HOH HOH . C 3 HOH A 65 765 65 HOH HOH . C 3 HOH A 66 766 21 HOH HOH . C 3 HOH A 67 767 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 5OD . . . B 2 41.177 11.994 240.526 1 40.5 ? C1 5OD 601 A 1 HETATM 2 C C3 5OD . . . B 2 40.17 13.81 239.553 1 44.35 ? C3 5OD 601 A 1 HETATM 3 C C11 5OD . . . B 2 35.375 13.339 239.667 1 43.11 ? C11 5OD 601 A 1 HETATM 4 C C12 5OD . . . B 2 35.142 14.203 238.464 1 42.23 ? C12 5OD 601 A 1 HETATM 5 C C13 5OD . . . B 2 36.349 14.302 237.604 1 44.98 ? C13 5OD 601 A 1 HETATM 6 C C14 5OD . . . B 2 37.634 14.679 238.34 1 39.92 ? C14 5OD 601 A 1 HETATM 7 C C15 5OD . . . B 2 42.548 9.839 240.57 1 34.75 ? C15 5OD 601 A 1 HETATM 8 C C16 5OD . . . B 2 43.738 9.175 240.811 1 31.73 ? C16 5OD 601 A 1 HETATM 9 C C17 5OD . . . B 2 44.851 9.863 241.256 1 35.22 ? C17 5OD 601 A 1 HETATM 10 C C18 5OD . . . B 2 44.775 11.227 241.463 1 33.89 ? C18 5OD 601 A 1 HETATM 11 C C19 5OD . . . B 2 43.588 11.897 241.223 1 37.28 ? C19 5OD 601 A 1 HETATM 12 C C23 5OD . . . B 2 34.715 15.6 238.902 1 41 ? C23 5OD 601 A 1 HETATM 13 N N2 5OD . . . B 2 41.251 13.092 239.798 1 47.02 ? N2 5OD 601 A 1 HETATM 14 C C4 5OD . . . B 2 38.938 13.412 240.046 1 42.8 ? C4 5OD 601 A 1 HETATM 15 N N5 5OD . . . B 2 38.867 12.316 240.782 1 40.18 ? N5 5OD 601 A 1 HETATM 16 C C6 5OD . . . B 2 39.948 11.601 241.037 1 38.68 ? C6 5OD 601 A 1 HETATM 17 N N7 5OD . . . B 2 39.828 10.402 241.843 1 36.25 ? N7 5OD 601 A 1 HETATM 18 C C8 5OD . . . B 2 42.467 11.212 240.785 1 37.34 ? C8 5OD 601 A 1 HETATM 19 N N9 5OD . . . B 2 37.756 14.224 239.769 1 40.73 ? N9 5OD 601 A 1 HETATM 20 C C10 5OD . . . B 2 36.519 13.85 240.533 1 42.01 ? C10 5OD 601 A 1 HETATM 21 CL CL1 5OD . . . B 2 41.153 8.883 239.996 1 38.04 ? CL1 5OD 601 A 1 HETATM 22 CL CL2 5OD . . . B 2 43.834 7.416 240.543 1 35.36 ? CL2 5OD 601 A 1 HETATM 23 N N22 5OD . . . B 2 34.035 13.598 237.653 1 38.92 ? N22 5OD 601 A 1 HETATM 24 H H1 5OD . . . B 2 40.234 14.578 239.034 1 53.88 ? H1 5OD 601 A 1 HETATM 25 H H2 5OD . . . B 2 34.564 13.319 240.199 1 52.39 ? H2 5OD 601 A 1 HETATM 26 H H3 5OD . . . B 2 35.584 12.44 239.37 1 52.39 ? H3 5OD 601 A 1 HETATM 27 H H4 5OD . . . B 2 36.182 14.97 236.921 1 54.64 ? H4 5OD 601 A 1 HETATM 28 H H5 5OD . . . B 2 36.486 13.444 237.172 1 54.64 ? H5 5OD 601 A 1 HETATM 29 H H6 5OD . . . B 2 38.381 14.306 237.845 1 48.57 ? H6 5OD 601 A 1 HETATM 30 H H7 5OD . . . B 2 37.711 15.646 238.327 1 48.57 ? H7 5OD 601 A 1 HETATM 31 H H8 5OD . . . B 2 45.647 9.41 241.416 1 42.92 ? H8 5OD 601 A 1 HETATM 32 H H9 5OD . . . B 2 45.522 11.694 241.763 1 41.33 ? H9 5OD 601 A 1 HETATM 33 H H10 5OD . . . B 2 43.541 12.814 241.366 1 45.4 ? H10 5OD 601 A 1 HETATM 34 H H11 5OD . . . B 2 35.463 16.047 239.329 1 49.86 ? H11 5OD 601 A 1 HETATM 35 H H12 5OD . . . B 2 33.979 15.531 239.53 1 49.86 ? H12 5OD 601 A 1 HETATM 36 H H13 5OD . . . B 2 34.432 16.11 238.127 1 49.86 ? H13 5OD 601 A 1 HETATM 37 H H14 5OD . . . B 2 39.669 9.645 241.467 1 44.16 ? H14 5OD 601 A 1 HETATM 38 H H15 5OD . . . B 2 39.915 10.448 242.698 1 44.16 ? H15 5OD 601 A 1 HETATM 39 H H16 5OD . . . B 2 36.752 13.157 241.171 1 51.07 ? H16 5OD 601 A 1 HETATM 40 H H17 5OD . . . B 2 36.211 14.631 241.018 1 51.07 ? H17 5OD 601 A 1 HETATM 41 H H18 5OD . . . B 2 33.251 13.895 237.951 1 47.36 ? H18 5OD 601 A 1 HETATM 42 H H19 5OD . . . B 2 34.133 13.827 236.799 1 47.36 ? H19 5OD 601 A 1 # _model_server_stats.io_time_ms 142 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 42 #