data_6CN6 # _model_server_result.job_id w0rauWKqUaaiBo8LUh2c9w _model_server_result.datetime_utc '2024-12-26 13:27:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cn6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":4000}' # _entry.id 6CN6 # _exptl.entry_id 6CN6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 468.59 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-cyano-N-{3-[1-(cyclopentanecarbonyl)piperidin-4-yl]-1,4-dimethyl-1H-indol-5-yl}benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6CN6 _cell.length_a 90.84 _cell.length_b 90.84 _cell.length_c 138.252 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CN6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 197 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 455 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 197 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 455 _struct_conn.ptnr2_symmetry 10_664 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.067 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C29 H32 N4 O2' _chem_comp.formula_weight 468.59 _chem_comp.id F7J _chem_comp.mon_nstd_flag . _chem_comp.name 3-cyano-N-{3-[1-(cyclopentanecarbonyl)piperidin-4-yl]-1,4-dimethyl-1H-indol-5-yl}benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 N1 F7J sing 83 n n C5 C4 F7J doub 84 n y C5 C6 F7J sing 85 n y N1 C6 F7J sing 86 n y N1 C9 F7J sing 87 n y C4 C3 F7J sing 88 n y C6 C7 F7J doub 89 n y C9 C8 F7J doub 90 n y C3 N3 F7J sing 91 n n C3 C2 F7J doub 92 n y C7 C8 F7J sing 93 n y C7 C2 F7J sing 94 n y O2 C22 F7J doub 95 n n N3 C22 F7J sing 96 n n C8 C11 F7J sing 97 n n C22 C23 F7J sing 98 n n C2 C1 F7J sing 99 n n N4 C29 F7J trip 100 n n C28 C23 F7J doub 101 n y C28 C27 F7J sing 102 n y C29 C27 F7J sing 103 n n C23 C24 F7J sing 104 n y C27 C26 F7J doub 105 n y C11 C15 F7J sing 106 n n C11 C12 F7J sing 107 n n C15 C14 F7J sing 108 n n C24 C25 F7J doub 109 n y C26 C25 F7J sing 110 n y C12 C13 F7J sing 111 n n C14 N2 F7J sing 112 n n C21 C17 F7J sing 113 n n C21 C20 F7J sing 114 n n C13 N2 F7J sing 115 n n N2 C16 F7J sing 116 n n C16 C17 F7J sing 117 n n C16 O1 F7J doub 118 n n C17 C18 F7J sing 119 n n C20 C19 F7J sing 120 n n C18 C19 F7J sing 121 n n N3 H28 F7J sing 122 n n C4 H4 F7J sing 123 n n C9 H6 F7J sing 124 n n C13 H14 F7J sing 125 n n C13 H13 F7J sing 126 n n C20 H25 F7J sing 127 n n C20 H24 F7J sing 128 n n C21 H26 F7J sing 129 n n C21 H27 F7J sing 130 n n C18 H20 F7J sing 131 n n C18 H21 F7J sing 132 n n C19 H23 F7J sing 133 n n C19 H22 F7J sing 134 n n C26 H31 F7J sing 135 n n C1 H3 F7J sing 136 n n C1 H2 F7J sing 137 n n C1 H1 F7J sing 138 n n C5 H5 F7J sing 139 n n C10 H9 F7J sing 140 n n C10 H8 F7J sing 141 n n C10 H7 F7J sing 142 n n C11 H10 F7J sing 143 n n C12 H12 F7J sing 144 n n C12 H11 F7J sing 145 n n C14 H15 F7J sing 146 n n C14 H16 F7J sing 147 n n C15 H18 F7J sing 148 n n C15 H17 F7J sing 149 n n C17 H19 F7J sing 150 n n C24 H29 F7J sing 151 n n C25 H30 F7J sing 152 n n C28 H32 F7J sing 153 n n # _atom_sites.entry_id 6CN6 _atom_sites.fract_transf_matrix[1][1] 0.011008 _atom_sites.fract_transf_matrix[1][2] 0.006356 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012711 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007233 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 F7J A 1 4000 4000 F7J PFE . C 3 HOH A 1 4101 11 HOH HOH . C 3 HOH A 2 4102 128 HOH HOH . C 3 HOH A 3 4103 62 HOH HOH . C 3 HOH A 4 4104 132 HOH HOH . C 3 HOH A 5 4105 50 HOH HOH . C 3 HOH A 6 4106 127 HOH HOH . C 3 HOH A 7 4107 111 HOH HOH . C 3 HOH A 8 4108 107 HOH HOH . C 3 HOH A 9 4109 38 HOH HOH . C 3 HOH A 10 4110 54 HOH HOH . C 3 HOH A 11 4111 18 HOH HOH . C 3 HOH A 12 4112 1 HOH HOH . C 3 HOH A 13 4113 122 HOH HOH . C 3 HOH A 14 4114 39 HOH HOH . C 3 HOH A 15 4115 6 HOH HOH . C 3 HOH A 16 4116 105 HOH HOH . C 3 HOH A 17 4117 109 HOH HOH . C 3 HOH A 18 4118 17 HOH HOH . C 3 HOH A 19 4119 131 HOH HOH . C 3 HOH A 20 4120 80 HOH HOH . C 3 HOH A 21 4121 40 HOH HOH . C 3 HOH A 22 4122 24 HOH HOH . C 3 HOH A 23 4123 37 HOH HOH . C 3 HOH A 24 4124 3 HOH HOH . C 3 HOH A 25 4125 7 HOH HOH . C 3 HOH A 26 4126 8 HOH HOH . C 3 HOH A 27 4127 125 HOH HOH . C 3 HOH A 28 4128 5 HOH HOH . C 3 HOH A 29 4129 51 HOH HOH . C 3 HOH A 30 4130 66 HOH HOH . C 3 HOH A 31 4131 78 HOH HOH . C 3 HOH A 32 4132 123 HOH HOH . C 3 HOH A 33 4133 113 HOH HOH . C 3 HOH A 34 4134 72 HOH HOH . C 3 HOH A 35 4135 126 HOH HOH . C 3 HOH A 36 4136 16 HOH HOH . C 3 HOH A 37 4137 44 HOH HOH . C 3 HOH A 38 4138 10 HOH HOH . C 3 HOH A 39 4139 110 HOH HOH . C 3 HOH A 40 4140 77 HOH HOH . C 3 HOH A 41 4141 48 HOH HOH . C 3 HOH A 42 4142 116 HOH HOH . C 3 HOH A 43 4143 4 HOH HOH . C 3 HOH A 44 4144 118 HOH HOH . C 3 HOH A 45 4145 28 HOH HOH . C 3 HOH A 46 4146 45 HOH HOH . C 3 HOH A 47 4147 23 HOH HOH . C 3 HOH A 48 4148 2 HOH HOH . C 3 HOH A 49 4149 115 HOH HOH . C 3 HOH A 50 4150 56 HOH HOH . C 3 HOH A 51 4151 120 HOH HOH . C 3 HOH A 52 4152 12 HOH HOH . C 3 HOH A 53 4153 98 HOH HOH . C 3 HOH A 54 4154 106 HOH HOH . C 3 HOH A 55 4155 29 HOH HOH . C 3 HOH A 56 4156 27 HOH HOH . C 3 HOH A 57 4157 60 HOH HOH . C 3 HOH A 58 4158 84 HOH HOH . C 3 HOH A 59 4159 58 HOH HOH . C 3 HOH A 60 4160 100 HOH HOH . C 3 HOH A 61 4161 124 HOH HOH . C 3 HOH A 62 4162 133 HOH HOH . C 3 HOH A 63 4163 52 HOH HOH . C 3 HOH A 64 4164 119 HOH HOH . C 3 HOH A 65 4165 53 HOH HOH . C 3 HOH A 66 4166 117 HOH HOH . C 3 HOH A 67 4167 32 HOH HOH . C 3 HOH A 68 4168 65 HOH HOH . C 3 HOH A 69 4169 129 HOH HOH . C 3 HOH A 70 4170 121 HOH HOH . C 3 HOH A 71 4171 108 HOH HOH . C 3 HOH A 72 4172 103 HOH HOH . C 3 HOH A 73 4173 36 HOH HOH . C 3 HOH A 74 4174 30 HOH HOH . C 3 HOH A 75 4175 130 HOH HOH . C 3 HOH A 76 4176 13 HOH HOH . C 3 HOH A 77 4177 68 HOH HOH . C 3 HOH A 78 4178 64 HOH HOH . C 3 HOH A 79 4179 49 HOH HOH . C 3 HOH A 80 4180 34 HOH HOH . C 3 HOH A 81 4181 35 HOH HOH . C 3 HOH A 82 4182 57 HOH HOH . C 3 HOH A 83 4183 46 HOH HOH . C 3 HOH A 84 4184 20 HOH HOH . C 3 HOH A 85 4185 63 HOH HOH . C 3 HOH A 86 4186 22 HOH HOH . C 3 HOH A 87 4187 14 HOH HOH . C 3 HOH A 88 4188 59 HOH HOH . C 3 HOH A 89 4189 26 HOH HOH . C 3 HOH A 90 4190 25 HOH HOH . C 3 HOH A 91 4191 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 F7J . . . B 2 1.512 28.611 11.885 1 47.7 ? N3 F7J 4000 A 1 HETATM 2 C C4 F7J . . . B 2 0.684 29.785 9.937 1 46.14 ? C4 F7J 4000 A 1 HETATM 3 N N2 F7J . . . B 2 -3.748 33.408 15.677 1 48.06 ? N2 F7J 4000 A 1 HETATM 4 C C7 F7J . . . B 2 -1.385 30.894 11.484 1 45.25 ? C7 F7J 4000 A 1 HETATM 5 C C6 F7J . . . B 2 -1.256 31.126 10.087 1 45.66 ? C6 F7J 4000 A 1 HETATM 6 C C9 F7J . . . B 2 -3.063 32.286 10.816 1 45.81 ? C9 F7J 4000 A 1 HETATM 7 C C13 F7J . . . B 2 -2.401 32.812 15.569 1 50.2 ? C13 F7J 4000 A 1 HETATM 8 C C20 F7J . . . B 2 -6.403 37.405 16.415 1 55.58 ? C20 F7J 4000 A 1 HETATM 9 C C21 F7J . . . B 2 -5.536 36.511 15.537 1 50.81 ? C21 F7J 4000 A 1 HETATM 10 C C8 F7J . . . B 2 -2.517 31.67 11.926 1 47.77 ? C8 F7J 4000 A 1 HETATM 11 C C18 F7J . . . B 2 -5.485 35.651 17.846 1 52.23 ? C18 F7J 4000 A 1 HETATM 12 C C16 F7J . . . B 2 -3.911 34.713 16.149 1 47.07 ? C16 F7J 4000 A 1 HETATM 13 C C19 F7J . . . B 2 -5.972 37.101 17.848 1 56.14 ? C19 F7J 4000 A 1 HETATM 14 C C26 F7J . . . B 2 5.553 26.328 13.912 1 49.61 ? C26 F7J 4000 A 1 HETATM 15 C C1 F7J . . . B 2 -0.647 29.616 13.521 1 43.93 ? C1 F7J 4000 A 1 HETATM 16 C C2 F7J . . . B 2 -0.48 30.01 12.098 1 45.79 ? C2 F7J 4000 A 1 HETATM 17 C C3 F7J . . . B 2 0.544 29.492 11.316 1 47.29 ? C3 F7J 4000 A 1 HETATM 18 C C5 F7J . . . B 2 -0.229 30.587 9.301 1 45.9 ? C5 F7J 4000 A 1 HETATM 19 N N1 F7J . . . B 2 -2.31 31.94 9.681 1 49.31 ? N1 F7J 4000 A 1 HETATM 20 C C10 F7J . . . B 2 -2.473 32.468 8.333 1 45.47 ? C10 F7J 4000 A 1 HETATM 21 C C11 F7J . . . B 2 -2.985 31.854 13.322 1 49.28 ? C11 F7J 4000 A 1 HETATM 22 C C12 F7J . . . B 2 -1.951 32.669 14.109 1 50.22 ? C12 F7J 4000 A 1 HETATM 23 C C14 F7J . . . B 2 -4.77 32.728 14.868 1 45.82 ? C14 F7J 4000 A 1 HETATM 24 C C15 F7J . . . B 2 -4.33 32.593 13.4 1 46.6 ? C15 F7J 4000 A 1 HETATM 25 O O1 F7J . . . B 2 -2.931 35.381 16.466 1 46.78 ? O1 F7J 4000 A 1 HETATM 26 C C17 F7J . . . B 2 -5.315 35.244 16.371 1 48.63 ? C17 F7J 4000 A 1 HETATM 27 C C22 F7J . . . B 2 2.818 29.032 12.07 1 48 ? C22 F7J 4000 A 1 HETATM 28 O O2 F7J . . . B 2 3.199 30.144 11.715 1 48.77 ? O2 F7J 4000 A 1 HETATM 29 C C23 F7J . . . B 2 3.733 28.053 12.71 1 48.06 ? C23 F7J 4000 A 1 HETATM 30 C C24 F7J . . . B 2 3.314 27.208 13.733 1 49.5 ? C24 F7J 4000 A 1 HETATM 31 C C25 F7J . . . B 2 4.223 26.331 14.313 1 50.13 ? C25 F7J 4000 A 1 HETATM 32 C C27 F7J . . . B 2 5.965 27.201 12.907 1 51.55 ? C27 F7J 4000 A 1 HETATM 33 C C28 F7J . . . B 2 5.058 28.054 12.286 1 48.49 ? C28 F7J 4000 A 1 HETATM 34 C C29 F7J . . . B 2 7.334 27.254 12.522 1 54.12 ? C29 F7J 4000 A 1 HETATM 35 N N4 F7J . . . B 2 8.444 27.316 12.204 1 53.13 ? N4 F7J 4000 A 1 HETATM 36 H H28 F7J . . . B 2 1.218 27.662 12.071 0 47.8 ? H28 F7J 4000 A 1 HETATM 37 H H4 F7J . . . B 2 1.528 29.367 9.379 0 46.04 ? H4 F7J 4000 A 1 HETATM 38 H H6 F7J . . . B 2 -3.927 32.939 10.73 0 45.83 ? H6 F7J 4000 A 1 HETATM 39 H H14 F7J . . . B 2 -1.646 33.391 16.15 0 50.18 ? H14 F7J 4000 A 1 HETATM 40 H H13 F7J . . . B 2 -2.432 31.812 16.065 0 50.18 ? H13 F7J 4000 A 1 HETATM 41 H H25 F7J . . . B 2 -7.477 37.184 16.264 0 55.52 ? H25 F7J 4000 A 1 HETATM 42 H H24 F7J . . . B 2 -6.294 38.476 16.169 0 55.52 ? H24 F7J 4000 A 1 HETATM 43 H H26 F7J . . . B 2 -6.002 36.291 14.557 0 50.8 ? H26 F7J 4000 A 1 HETATM 44 H H27 F7J . . . B 2 -4.581 37.015 15.284 0 50.8 ? H27 F7J 4000 A 1 HETATM 45 H H20 F7J . . . B 2 -4.552 35.542 18.436 0 52.25 ? H20 F7J 4000 A 1 HETATM 46 H H21 F7J . . . B 2 -6.201 34.98 18.36 0 52.25 ? H21 F7J 4000 A 1 HETATM 47 H H23 F7J . . . B 2 -6.789 37.269 18.576 0 56.12 ? H23 F7J 4000 A 1 HETATM 48 H H22 F7J . . . B 2 -5.169 37.793 18.169 0 56.12 ? H22 F7J 4000 A 1 HETATM 49 H H31 F7J . . . B 2 6.273 25.658 14.393 0 49.65 ? H31 F7J 4000 A 1 HETATM 50 H H3 F7J . . . B 2 0.135 28.954 13.919 0 43.98 ? H3 F7J 4000 A 1 HETATM 51 H H2 F7J . . . B 2 -1.6 29.087 13.675 0 43.98 ? H2 F7J 4000 A 1 HETATM 52 H H1 F7J . . . B 2 -0.642 30.5 14.183 0 43.98 ? H1 F7J 4000 A 1 HETATM 53 H H5 F7J . . . B 2 -0.156 30.809 8.235 0 45.87 ? H5 F7J 4000 A 1 HETATM 54 H H9 F7J . . . B 2 -2.632 31.654 7.602 0 45.45 ? H9 F7J 4000 A 1 HETATM 55 H H8 F7J . . . B 2 -1.582 33.036 8.012 0 45.45 ? H8 F7J 4000 A 1 HETATM 56 H H7 F7J . . . B 2 -3.339 33.148 8.275 0 45.45 ? H7 F7J 4000 A 1 HETATM 57 H H10 F7J . . . B 2 -3.113 30.842 13.786 0 49.23 ? H10 F7J 4000 A 1 HETATM 58 H H12 F7J . . . B 2 -1.794 33.663 13.643 0 50.24 ? H12 F7J 4000 A 1 HETATM 59 H H11 F7J . . . B 2 -0.951 32.182 14.072 0 50.24 ? H11 F7J 4000 A 1 HETATM 60 H H15 F7J . . . B 2 -4.95 31.723 15.313 0 45.78 ? H15 F7J 4000 A 1 HETATM 61 H H16 F7J . . . B 2 -5.755 33.25 14.931 0 45.78 ? H16 F7J 4000 A 1 HETATM 62 H H18 F7J . . . B 2 -5.109 32.051 12.825 0 46.57 ? H18 F7J 4000 A 1 HETATM 63 H H17 F7J . . . B 2 -4.263 33.597 12.934 0 46.57 ? H17 F7J 4000 A 1 HETATM 64 H H19 F7J . . . B 2 -6.095 34.486 16.104 0 48.63 ? H19 F7J 4000 A 1 HETATM 65 H H29 F7J . . . B 2 2.291 27.247 14.12 0 49.62 ? H29 F7J 4000 A 1 HETATM 66 H H30 F7J . . . B 2 3.895 25.651 15.105 0 50.23 ? H30 F7J 4000 A 1 HETATM 67 H H32 F7J . . . B 2 5.386 28.734 11.49 0 48.53 ? H32 F7J 4000 A 1 # _model_server_stats.io_time_ms 106 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 67 #