data_6CNE # _model_server_result.job_id 4gqfQ_wxVpoXW7jVCPSnDg _model_server_result.datetime_utc '2024-10-20 20:54:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cne # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":101}' # _entry.id 6CNE # _exptl.entry_id 6CNE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.27 _cell.angle_gamma 90 _cell.entry_id 6CNE _cell.length_a 27.844 _cell.length_b 36.43 _cell.length_c 48.963 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CNE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 4 A LYS 4 1_555 A N MSE 5 A MSE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C MSE 5 A MSE 5 1_555 A N ILE 6 A ILE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 B C LYS 4 B LYS 4 1_555 B N MSE 5 B MSE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale4 B C MSE 5 B MSE 5 1_555 B N ILE 6 B ILE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 158 n n C1 H11 MPD sing 159 n n C1 H12 MPD sing 160 n n C1 H13 MPD sing 161 n n C2 O2 MPD sing 162 n n C2 CM MPD sing 163 n n C2 C3 MPD sing 164 n n O2 HO2 MPD sing 165 n n CM HM1 MPD sing 166 n n CM HM2 MPD sing 167 n n CM HM3 MPD sing 168 n n C3 C4 MPD sing 169 n n C3 H31 MPD sing 170 n n C3 H32 MPD sing 171 n n C4 O4 MPD sing 172 n n C4 C5 MPD sing 173 n n C4 H4 MPD sing 174 n n O4 HO4 MPD sing 175 n n C5 H51 MPD sing 176 n n C5 H52 MPD sing 177 n n C5 H53 MPD sing 178 n n # _atom_sites.entry_id 6CNE _atom_sites.fract_transf_matrix[1][1] 0.035914 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005862 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02745 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020694 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MPD A 1 101 1 MPD MPD . D 2 MPD A 1 102 4 MPD MPD . E 3 PO4 A 1 103 2 PO4 PO4 . F 2 MPD B 1 101 2 MPD MPD . G 2 MPD B 1 102 3 MPD MPD . H 3 PO4 B 1 103 1 PO4 PO4 . I 4 HOH A 1 201 24 HOH HOH . I 4 HOH A 2 202 153 HOH HOH . I 4 HOH A 3 203 126 HOH HOH . I 4 HOH A 4 204 112 HOH HOH . I 4 HOH A 5 205 129 HOH HOH . I 4 HOH A 6 206 72 HOH HOH . I 4 HOH A 7 207 80 HOH HOH . I 4 HOH A 8 208 33 HOH HOH . I 4 HOH A 9 209 151 HOH HOH . I 4 HOH A 10 210 44 HOH HOH . I 4 HOH A 11 211 120 HOH HOH . I 4 HOH A 12 212 104 HOH HOH . I 4 HOH A 13 213 47 HOH HOH . I 4 HOH A 14 214 39 HOH HOH . I 4 HOH A 15 215 95 HOH HOH . I 4 HOH A 16 216 1 HOH HOH . I 4 HOH A 17 217 50 HOH HOH . I 4 HOH A 18 218 175 HOH HOH . I 4 HOH A 19 219 109 HOH HOH . I 4 HOH A 20 220 147 HOH HOH . I 4 HOH A 21 221 51 HOH HOH . I 4 HOH A 22 222 96 HOH HOH . I 4 HOH A 23 223 115 HOH HOH . I 4 HOH A 24 224 122 HOH HOH . I 4 HOH A 25 225 31 HOH HOH . I 4 HOH A 26 226 11 HOH HOH . I 4 HOH A 27 227 8 HOH HOH . I 4 HOH A 28 228 12 HOH HOH . I 4 HOH A 29 229 7 HOH HOH . I 4 HOH A 30 230 110 HOH HOH . I 4 HOH A 31 231 142 HOH HOH . I 4 HOH A 32 232 94 HOH HOH . I 4 HOH A 33 233 27 HOH HOH . I 4 HOH A 34 234 146 HOH HOH . I 4 HOH A 35 235 93 HOH HOH . I 4 HOH A 36 236 45 HOH HOH . I 4 HOH A 37 237 3 HOH HOH . I 4 HOH A 38 238 54 HOH HOH . I 4 HOH A 39 239 137 HOH HOH . I 4 HOH A 40 240 92 HOH HOH . I 4 HOH A 41 241 20 HOH HOH . I 4 HOH A 42 242 91 HOH HOH . I 4 HOH A 43 243 143 HOH HOH . I 4 HOH A 44 244 158 HOH HOH . I 4 HOH A 45 245 78 HOH HOH . I 4 HOH A 46 246 57 HOH HOH . I 4 HOH A 47 247 6 HOH HOH . I 4 HOH A 48 248 34 HOH HOH . I 4 HOH A 49 249 111 HOH HOH . I 4 HOH A 50 250 22 HOH HOH . I 4 HOH A 51 251 41 HOH HOH . I 4 HOH A 52 252 149 HOH HOH . I 4 HOH A 53 253 69 HOH HOH . I 4 HOH A 54 254 21 HOH HOH . I 4 HOH A 55 255 30 HOH HOH . I 4 HOH A 56 256 134 HOH HOH . I 4 HOH A 57 257 75 HOH HOH . I 4 HOH A 58 258 79 HOH HOH . I 4 HOH A 59 259 141 HOH HOH . I 4 HOH A 60 260 74 HOH HOH . I 4 HOH A 61 261 85 HOH HOH . I 4 HOH A 62 262 127 HOH HOH . I 4 HOH A 63 263 19 HOH HOH . I 4 HOH A 64 264 97 HOH HOH . I 4 HOH A 65 265 144 HOH HOH . I 4 HOH A 66 266 169 HOH HOH . I 4 HOH A 67 267 38 HOH HOH . I 4 HOH A 68 268 124 HOH HOH . I 4 HOH A 69 269 118 HOH HOH . I 4 HOH A 70 270 160 HOH HOH . I 4 HOH A 71 271 117 HOH HOH . I 4 HOH A 72 272 107 HOH HOH . I 4 HOH A 73 273 138 HOH HOH . I 4 HOH A 74 274 73 HOH HOH . I 4 HOH A 75 275 164 HOH HOH . I 4 HOH A 76 276 116 HOH HOH . I 4 HOH A 77 277 98 HOH HOH . I 4 HOH A 78 278 46 HOH HOH . I 4 HOH A 79 279 155 HOH HOH . I 4 HOH A 80 280 121 HOH HOH . I 4 HOH A 81 281 173 HOH HOH . I 4 HOH A 82 282 52 HOH HOH . I 4 HOH A 83 283 135 HOH HOH . I 4 HOH A 84 284 84 HOH HOH . I 4 HOH A 85 285 170 HOH HOH . I 4 HOH A 86 286 77 HOH HOH . J 4 HOH B 1 201 174 HOH HOH . J 4 HOH B 2 202 86 HOH HOH . J 4 HOH B 3 203 167 HOH HOH . J 4 HOH B 4 204 154 HOH HOH . J 4 HOH B 5 205 125 HOH HOH . J 4 HOH B 6 206 16 HOH HOH . J 4 HOH B 7 207 165 HOH HOH . J 4 HOH B 8 208 64 HOH HOH . J 4 HOH B 9 209 105 HOH HOH . J 4 HOH B 10 210 171 HOH HOH . J 4 HOH B 11 211 89 HOH HOH . J 4 HOH B 12 212 113 HOH HOH . J 4 HOH B 13 213 82 HOH HOH . J 4 HOH B 14 214 59 HOH HOH . J 4 HOH B 15 215 163 HOH HOH . J 4 HOH B 16 216 62 HOH HOH . J 4 HOH B 17 217 65 HOH HOH . J 4 HOH B 18 218 36 HOH HOH . J 4 HOH B 19 219 145 HOH HOH . J 4 HOH B 20 220 4 HOH HOH . J 4 HOH B 21 221 48 HOH HOH . J 4 HOH B 22 222 29 HOH HOH . J 4 HOH B 23 223 61 HOH HOH . J 4 HOH B 24 224 9 HOH HOH . J 4 HOH B 25 225 58 HOH HOH . J 4 HOH B 26 226 13 HOH HOH . J 4 HOH B 27 227 140 HOH HOH . J 4 HOH B 28 228 103 HOH HOH . J 4 HOH B 29 229 2 HOH HOH . J 4 HOH B 30 230 71 HOH HOH . J 4 HOH B 31 231 87 HOH HOH . J 4 HOH B 32 232 43 HOH HOH . J 4 HOH B 33 233 67 HOH HOH . J 4 HOH B 34 234 40 HOH HOH . J 4 HOH B 35 235 60 HOH HOH . J 4 HOH B 36 236 49 HOH HOH . J 4 HOH B 37 237 18 HOH HOH . J 4 HOH B 38 238 14 HOH HOH . J 4 HOH B 39 239 136 HOH HOH . J 4 HOH B 40 240 10 HOH HOH . J 4 HOH B 41 241 76 HOH HOH . J 4 HOH B 42 242 5 HOH HOH . J 4 HOH B 43 243 25 HOH HOH . J 4 HOH B 44 244 119 HOH HOH . J 4 HOH B 45 245 132 HOH HOH . J 4 HOH B 46 246 88 HOH HOH . J 4 HOH B 47 247 32 HOH HOH . J 4 HOH B 48 248 176 HOH HOH . J 4 HOH B 49 249 35 HOH HOH . J 4 HOH B 50 250 23 HOH HOH . J 4 HOH B 51 251 53 HOH HOH . J 4 HOH B 52 252 37 HOH HOH . J 4 HOH B 53 253 63 HOH HOH . J 4 HOH B 54 254 17 HOH HOH . J 4 HOH B 55 255 157 HOH HOH . J 4 HOH B 56 256 108 HOH HOH . J 4 HOH B 57 257 102 HOH HOH . J 4 HOH B 58 258 123 HOH HOH . J 4 HOH B 59 259 70 HOH HOH . J 4 HOH B 60 260 139 HOH HOH . J 4 HOH B 61 261 172 HOH HOH . J 4 HOH B 62 262 28 HOH HOH . J 4 HOH B 63 263 168 HOH HOH . J 4 HOH B 64 264 162 HOH HOH . J 4 HOH B 65 265 114 HOH HOH . J 4 HOH B 66 266 161 HOH HOH . J 4 HOH B 67 267 101 HOH HOH . J 4 HOH B 68 268 68 HOH HOH . J 4 HOH B 69 269 106 HOH HOH . J 4 HOH B 70 270 15 HOH HOH . J 4 HOH B 71 271 166 HOH HOH . J 4 HOH B 72 272 66 HOH HOH . J 4 HOH B 73 273 55 HOH HOH . J 4 HOH B 74 274 128 HOH HOH . J 4 HOH B 75 275 152 HOH HOH . J 4 HOH B 76 276 99 HOH HOH . J 4 HOH B 77 277 130 HOH HOH . J 4 HOH B 78 278 83 HOH HOH . J 4 HOH B 79 279 42 HOH HOH . J 4 HOH B 80 280 150 HOH HOH . J 4 HOH B 81 281 133 HOH HOH . J 4 HOH B 82 282 90 HOH HOH . J 4 HOH B 83 283 156 HOH HOH . J 4 HOH B 84 284 148 HOH HOH . J 4 HOH B 85 285 26 HOH HOH . J 4 HOH B 86 286 100 HOH HOH . J 4 HOH B 87 287 56 HOH HOH . J 4 HOH B 88 288 81 HOH HOH . J 4 HOH B 89 289 131 HOH HOH . J 4 HOH B 90 290 159 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . F 2 -30.386 -11.664 49.523 1 17.08 ? C1 MPD 101 B 1 HETATM 2 C C2 MPD . . . F 2 -31.414 -11.17 50.52 1 15.61 ? C2 MPD 101 B 1 HETATM 3 O O2 MPD . . . F 2 -32.595 -12 50.394 1 22.34 ? O2 MPD 101 B 1 HETATM 4 C CM MPD . . . F 2 -30.971 -11.35 51.972 1 12.42 ? CM MPD 101 B 1 HETATM 5 C C3 MPD . . . F 2 -31.941 -9.78 50.156 1 18.11 ? C3 MPD 101 B 1 HETATM 6 C C4 MPD . . . F 2 -30.949 -8.678 49.862 1 15.33 ? C4 MPD 101 B 1 HETATM 7 O O4 MPD . . . F 2 -30.381 -8.759 48.561 1 11.02 ? O4 MPD 101 B 1 HETATM 8 C C5 MPD . . . F 2 -31.645 -7.316 50.04 1 13.29 ? C5 MPD 101 B 1 HETATM 9 H H11 MPD . . . F 2 -30.508 -11.131 48.58 1 20.5 ? H11 MPD 101 B 1 HETATM 10 H H12 MPD . . . F 2 -30.525 -12.732 49.357 1 20.5 ? H12 MPD 101 B 1 HETATM 11 H H13 MPD . . . F 2 -29.385 -11.485 49.915 1 20.5 ? H13 MPD 101 B 1 HETATM 12 H HO2 MPD . . . F 2 -33.382 -11.43 50.27 1 26.8 ? HO2 MPD 101 B 1 HETATM 13 H HM1 MPD . . . F 2 -30.432 -10.461 52.3 1 14.91 ? HM1 MPD 101 B 1 HETATM 14 H HM2 MPD . . . F 2 -30.317 -12.219 52.047 1 14.91 ? HM2 MPD 101 B 1 HETATM 15 H HM3 MPD . . . F 2 -31.847 -11.498 52.604 1 14.91 ? HM3 MPD 101 B 1 HETATM 16 H H31 MPD . . . F 2 -32.576 -9.891 49.277 1 21.74 ? H31 MPD 101 B 1 HETATM 17 H H32 MPD . . . F 2 -32.568 -9.442 50.982 1 21.74 ? H32 MPD 101 B 1 HETATM 18 H H4 MPD . . . F 2 -30.122 -8.793 50.561 1 18.39 ? H4 MPD 101 B 1 HETATM 19 H HO4 MPD . . . F 2 -30.984 -8.336 47.915 1 13.22 ? HO4 MPD 101 B 1 HETATM 20 H H51 MPD . . . F 2 -31.448 -6.691 49.169 1 15.95 ? H51 MPD 101 B 1 HETATM 21 H H52 MPD . . . F 2 -31.259 -6.825 50.933 1 15.95 ? H52 MPD 101 B 1 HETATM 22 H H53 MPD . . . F 2 -32.719 -7.467 50.143 1 15.95 ? H53 MPD 101 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #