data_6CNJ # _model_server_result.job_id WQ0VlbTAGa1nS4vG7D_JKA _model_server_result.datetime_utc '2024-12-01 17:59:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cnj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":403}' # _entry.id 6CNJ # _exptl.entry_id 6CNJ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CNJ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CNJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details undecameric _pdbx_struct_assembly.oligomeric_count 11 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 Q N N ? 8 R N N ? 8 T N N ? 8 U N N ? 8 V N N ? 8 W N N ? 8 Z N N ? 8 AA N N ? 8 BA N N ? 8 CA N N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n L NAG 1 L 1 NAG B 400 NAG 5 n L NAG 2 L 2 NAG B 401 NAG 5 n L BMA 3 L 3 BMA B 402 BMA 5 n M NAG 1 M 1 NAG C 400 NAG 5 n M NAG 2 M 2 NAG C 401 NAG 5 n M BMA 3 M 3 BMA C 402 BMA 5 n N NAG 1 N 1 NAG E 400 NAG 5 n N NAG 2 N 2 NAG E 401 NAG 5 n N BMA 3 N 3 BMA E 402 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 135 A CYS 135 1_555 A SG CYS 149 A CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 199 A CYS 199 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 B SG CYS 130 B CYS 130 1_555 B SG CYS 144 B CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 C SG CYS 130 C CYS 130 1_555 C SG CYS 144 C CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 D SG CYS 135 D CYS 135 1_555 D SG CYS 149 D CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 D SG CYS 199 D CYS 199 1_555 D SG CYS 200 D CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf7 E SG CYS 130 E CYS 130 1_555 E SG CYS 144 E CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf8 F SG CYS 42 F CYS 23 1_555 F SG CYS 112 F CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 F SG CYS 158 F CYS 139 1_555 F SG CYS 218 F CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf10 G SG CYS 165 G CYS 147 1_555 G SG CYS 220 G CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf11 H SG CYS 42 H CYS 23 1_555 H SG CYS 112 H CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 H SG CYS 158 H CYS 139 1_555 H SG CYS 218 H CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf13 I SG CYS 165 I CYS 147 1_555 I SG CYS 220 I CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf14 J SG CYS 42 J CYS 23 1_555 J SG CYS 112 J CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf15 J SG CYS 158 J CYS 139 1_555 J SG CYS 218 J CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf16 K SG CYS 165 K CYS 147 1_555 K SG CYS 220 K CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 148 A ASN 148 1_555 O C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 B ND2 ASN 143 B ASN 143 1_555 L C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 C ND2 ASN 143 C ASN 143 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 C NH2 ARG 186 C ARG 186 1_555 M C8 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale5 D ND2 ASN 148 D ASN 148 1_555 X C1 NAG . D NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale6 E ND2 ASN 143 E ASN 143 1_555 N C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale7 E NH2 ARG 186 E ARG 186 1_555 N C8 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale8 L O4 NAG . L NAG 1 1_555 L C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale9 L O4 NAG . L NAG 2 1_555 L C1 BMA . L BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale10 M O4 NAG . M NAG 1 1_555 M C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale11 M O4 NAG . M NAG 2 1_555 M C1 BMA . M BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale12 N O4 NAG . N NAG 1 1_555 N C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale13 N O4 NAG . N NAG 2 1_555 N C1 BMA . N BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6CNJ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 6 NAG A 1 401 400 NAG NAG . P 7 NCT A 1 402 500 NCT NCT . Q 8 Y01 A 1 403 6 Y01 Y01 . R 8 Y01 A 1 404 7 Y01 Y01 . S 9 NA A 1 405 1 NA NA . T 8 Y01 B 1 504 1 Y01 Y01 . U 8 Y01 B 1 505 8 Y01 Y01 . V 8 Y01 C 1 504 2 Y01 Y01 . W 8 Y01 C 1 505 3 Y01 Y01 . X 6 NAG D 1 401 400 NAG NAG . Y 7 NCT D 1 402 500 NCT NCT . Z 8 Y01 D 1 403 4 Y01 Y01 . AA 8 Y01 D 1 404 9 Y01 Y01 . BA 8 Y01 E 1 504 5 Y01 Y01 . CA 8 Y01 E 1 505 10 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . Z 8 110.209 145.124 113.709 1 140.07 ? CAA Y01 403 D 1 HETATM 2 C CBA Y01 . . . Z 8 110.878 144.263 112.63 1 140.07 ? CBA Y01 403 D 1 HETATM 3 C CAB Y01 . . . Z 8 109.792 143.585 111.78 1 140.07 ? CAB Y01 403 D 1 HETATM 4 C CAN Y01 . . . Z 8 111.766 145.17 111.722 1 140.07 ? CAN Y01 403 D 1 HETATM 5 C CAJ Y01 . . . Z 8 112.211 144.377 110.463 1 140.07 ? CAJ Y01 403 D 1 HETATM 6 C CAO Y01 . . . Z 8 112.751 145.371 109.389 1 140.07 ? CAO Y01 403 D 1 HETATM 7 C CBB Y01 . . . Z 8 111.947 145.152 107.996 1 140.07 ? CBB Y01 403 D 1 HETATM 8 C CAC Y01 . . . Z 8 110.421 144.986 108.33 1 140.07 ? CAC Y01 403 D 1 HETATM 9 C CBE Y01 . . . Z 8 112.101 146.222 107.155 1 140.07 ? CBE Y01 403 D 1 HETATM 10 C CAP Y01 . . . Z 8 113.454 147.06 107.45 1 140.07 ? CAP Y01 403 D 1 HETATM 11 C CAQ Y01 . . . Z 8 113.955 147.712 105.839 1 140.07 ? CAQ Y01 403 D 1 HETATM 12 C CBG Y01 . . . Z 8 112.769 147.101 104.773 1 140.07 ? CBG Y01 403 D 1 HETATM 13 C CBI Y01 . . . Z 8 112.294 145.709 105.53 1 140.07 ? CBI Y01 403 D 1 HETATM 14 C CAE Y01 . . . Z 8 113.534 144.779 105.603 1 140.07 ? CAE Y01 403 D 1 HETATM 15 C CAU Y01 . . . Z 8 111.414 145.072 104.931 1 140.07 ? CAU Y01 403 D 1 HETATM 16 C CAS Y01 . . . Z 8 111.482 145.079 103.767 1 140.07 ? CAS Y01 403 D 1 HETATM 17 C CBF Y01 . . . Z 8 111.806 146.497 103.17 1 140.07 ? CBF Y01 403 D 1 HETATM 18 C CBD Y01 . . . Z 8 112.895 147.028 103.785 1 140.07 ? CBD Y01 403 D 1 HETATM 19 C CAK Y01 . . . Z 8 113.249 148.136 103.281 1 140.07 ? CAK Y01 403 D 1 HETATM 20 C CAI Y01 . . . Z 8 113.431 148.074 101.63 1 140.07 ? CAI Y01 403 D 1 HETATM 21 C CAZ Y01 . . . Z 8 112.425 147.384 100.932 1 140.07 ? CAZ Y01 403 D 1 HETATM 22 C CAV Y01 . . . Z 8 112.411 147.325 99.347 1 140.07 ? CAV Y01 403 D 1 HETATM 23 C CBH Y01 . . . Z 8 111.988 146.323 101.484 1 140.07 ? CBH Y01 403 D 1 HETATM 24 C CAD Y01 . . . Z 8 113.004 145.204 101.254 1 140.07 ? CAD Y01 403 D 1 HETATM 25 C CAT Y01 . . . Z 8 110.531 145.836 100.858 1 140.07 ? CAT Y01 403 D 1 HETATM 26 C CAR Y01 . . . Z 8 110.54 145.77 99.349 1 140.07 ? CAR Y01 403 D 1 HETATM 27 C CBC Y01 . . . Z 8 110.995 146.926 98.785 1 140.07 ? CBC Y01 403 D 1 HETATM 28 O OAW Y01 . . . Z 8 111.098 146.734 97.309 1 140.07 ? OAW Y01 403 D 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 30 _model_server_stats.element_count 28 #