data_6CNK # _model_server_result.job_id eX2vwxNgPDcEmGaCpEXy9A _model_server_result.datetime_utc '2025-02-05 10:48:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cnk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AA","auth_seq_id":501}' # _entry.id 6CNK # _exptl.entry_id 6CNK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CNK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CNK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 M N N ? 7 N N N ? 7 S N N ? 7 T N N ? 7 U N N ? 7 V N N ? 7 Y N N ? 7 Z N N ? 7 AA N N ? 7 BA N N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n J NAG 1 H 1 NAG C 400 NAG 5 n J NAG 2 H 2 NAG C 401 NAG 5 n J BMA 3 H 3 BMA C 402 BMA 5 n K NAG 1 I 1 NAG E 400 NAG 5 n K NAG 2 I 2 NAG E 401 NAG 5 n K BMA 3 I 3 BMA E 402 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 135 A CYS 135 1_555 A SG CYS 149 A CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 199 A CYS 199 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf3 B SG CYS 135 B CYS 135 1_555 B SG CYS 149 B CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 199 B CYS 199 1_555 B SG CYS 200 B CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf5 C SG CYS 130 C CYS 130 1_555 C SG CYS 144 C CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 D SG CYS 135 D CYS 135 1_555 D SG CYS 149 D CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 D SG CYS 199 D CYS 199 1_555 D SG CYS 200 D CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf8 E SG CYS 130 E CYS 130 1_555 E SG CYS 144 E CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf9 F SG CYS 42 F CYS 23 1_555 F SG CYS 112 F CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf10 F SG CYS 158 F CYS 139 1_555 F SG CYS 218 F CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 G SG CYS 165 G CYS 147 1_555 G SG CYS 220 G CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf12 H SG CYS 42 J CYS 23 1_555 H SG CYS 112 J CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf13 H SG CYS 158 J CYS 139 1_555 H SG CYS 218 J CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf14 I SG CYS 165 K CYS 147 1_555 I SG CYS 220 K CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 148 A ASN 148 1_555 L C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 B ND2 ASN 148 B ASN 148 1_555 Q C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale3 C ND2 ASN 143 C ASN 143 1_555 J C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 D ND2 ASN 148 D ASN 148 1_555 X C1 NAG . D NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.489 ? covale ? covale5 E ND2 ASN 143 E ASN 143 1_555 K C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale6 J O4 NAG . H NAG 1 1_555 J C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale7 J O4 NAG . H NAG 2 1_555 J C1 BMA . H BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale8 K O4 NAG . I NAG 1 1_555 K C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale9 K O4 NAG . I NAG 2 1_555 K C1 BMA . I BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 455 n n CBA CAB Y01 sing 456 n n CBA CAN Y01 sing 457 n n CAN CAJ Y01 sing 458 n n CAJ CAO Y01 sing 459 n n CAO CBB Y01 sing 460 n n CBB CAC Y01 sing 461 n n CBB CBE Y01 sing 462 n n CBE CAP Y01 sing 463 n n CBE CBI Y01 sing 464 n n CAP CAQ Y01 sing 465 n n CAQ CBG Y01 sing 466 n n CBG CBI Y01 sing 467 n n CBG CBD Y01 sing 468 n n CBI CAE Y01 sing 469 n n CBI CAU Y01 sing 470 n n CAU CAS Y01 sing 471 n n CAS CBF Y01 sing 472 n n CBF CBD Y01 sing 473 n n CBF CBH Y01 sing 474 n n CBD CAK Y01 sing 475 n n CAK CAI Y01 sing 476 n n CAI CAZ Y01 doub 477 n n CAZ CAV Y01 sing 478 n n CAZ CBH Y01 sing 479 n n CAV CBC Y01 sing 480 n n CBH CAD Y01 sing 481 n n CBH CAT Y01 sing 482 n n CAT CAR Y01 sing 483 n n CAR CBC Y01 sing 484 n n CBC OAW Y01 sing 485 n n OAW CAY Y01 sing 486 n n CAY OAG Y01 doub 487 n n CAY CAM Y01 sing 488 n n CAM CAL Y01 sing 489 n n CAL CAX Y01 sing 490 n n CAX OAH Y01 sing 491 n n CAX OAF Y01 doub 492 n n CAA HAA1 Y01 sing 493 n n CAA HAA2 Y01 sing 494 n n CAA HAA3 Y01 sing 495 n n CBA HBA Y01 sing 496 n n CAB HAB1 Y01 sing 497 n n CAB HAB2 Y01 sing 498 n n CAB HAB3 Y01 sing 499 n n CAN HAN1 Y01 sing 500 n n CAN HAN2 Y01 sing 501 n n CAJ HAJ1 Y01 sing 502 n n CAJ HAJ2 Y01 sing 503 n n CAO HAO1 Y01 sing 504 n n CAO HAO2 Y01 sing 505 n n CBB HBB Y01 sing 506 n n CAC HAC1 Y01 sing 507 n n CAC HAC2 Y01 sing 508 n n CAC HAC3 Y01 sing 509 n n CBE HBE Y01 sing 510 n n CAP HAP1 Y01 sing 511 n n CAP HAP2 Y01 sing 512 n n CAQ HAQ1 Y01 sing 513 n n CAQ HAQ2 Y01 sing 514 n n CBG HBG Y01 sing 515 n n CBD HBD Y01 sing 516 n n CAE HAE1 Y01 sing 517 n n CAE HAE2 Y01 sing 518 n n CAE HAE3 Y01 sing 519 n n CAU HAU1 Y01 sing 520 n n CAU HAU2 Y01 sing 521 n n CAS HAS1 Y01 sing 522 n n CAS HAS2 Y01 sing 523 n n CBF HBF Y01 sing 524 n n CAK HAK1 Y01 sing 525 n n CAK HAK2 Y01 sing 526 n n CAI HAI Y01 sing 527 n n CAV HAV1 Y01 sing 528 n n CAV HAV2 Y01 sing 529 n n CBC HBC Y01 sing 530 n n CAD HAD1 Y01 sing 531 n n CAD HAD2 Y01 sing 532 n n CAD HAD3 Y01 sing 533 n n CAT HAT1 Y01 sing 534 n n CAT HAT2 Y01 sing 535 n n CAR HAR1 Y01 sing 536 n n CAR HAR2 Y01 sing 537 n n CAM HAM1 Y01 sing 538 n n CAM HAM2 Y01 sing 539 n n CAL HAL1 Y01 sing 540 n n CAL HAL2 Y01 sing 541 n n OAH HAH Y01 sing 542 n n # _atom_sites.entry_id 6CNK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 6 NAG A 1 401 400 NAG NAG . M 7 Y01 A 1 402 6 Y01 Y01 . N 7 Y01 A 1 403 7 Y01 Y01 . O 8 NA A 1 404 1 NA NA . P 9 NCT A 1 405 402 NCT NCT . Q 6 NAG B 1 401 400 NAG NAG . R 9 NCT B 1 402 500 NCT NCT . S 7 Y01 B 1 403 1 Y01 Y01 . T 7 Y01 B 1 404 8 Y01 Y01 . U 7 Y01 C 1 501 2 Y01 Y01 . V 7 Y01 C 1 502 3 Y01 Y01 . W 9 NCT D 1 401 500 NCT NCT . X 6 NAG D 1 402 400 NAG NAG . Y 7 Y01 D 1 403 4 Y01 Y01 . Z 7 Y01 D 1 404 9 Y01 Y01 . AA 7 Y01 E 1 501 5 Y01 Y01 . BA 7 Y01 E 1 502 10 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . AA 7 144.546 158.52 108.85 1 132.28 ? CAA Y01 501 E 1 HETATM 2 C CBA Y01 . . . AA 7 145.319 157.3 109.365 1 132.28 ? CBA Y01 501 E 1 HETATM 3 C CAB Y01 . . . AA 7 144.358 156.114 109.534 1 132.28 ? CAB Y01 501 E 1 HETATM 4 C CAN Y01 . . . AA 7 146.454 156.939 108.358 1 132.28 ? CAN Y01 501 E 1 HETATM 5 C CAJ Y01 . . . AA 7 145.862 156.166 107.149 1 132.28 ? CAJ Y01 501 E 1 HETATM 6 C CAO Y01 . . . AA 7 146.841 156.265 105.939 1 132.28 ? CAO Y01 501 E 1 HETATM 7 C CBB Y01 . . . AA 7 146.019 156.771 104.634 1 132.28 ? CBB Y01 501 E 1 HETATM 8 C CAC Y01 . . . AA 7 145.302 158.12 105.002 1 132.28 ? CAC Y01 501 E 1 HETATM 9 C CBE Y01 . . . AA 7 146.849 156.984 103.565 1 132.28 ? CBE Y01 501 E 1 HETATM 10 C CAP Y01 . . . AA 7 148.229 156.143 103.665 1 132.28 ? CAP Y01 501 E 1 HETATM 11 C CAQ Y01 . . . AA 7 148.687 155.806 101.948 1 132.28 ? CAQ Y01 501 E 1 HETATM 12 C CBG Y01 . . . AA 7 147.411 156.503 101.049 1 132.28 ? CBG Y01 501 E 1 HETATM 13 C CBI Y01 . . . AA 7 146.144 156.41 102.11 1 132.28 ? CBI Y01 501 E 1 HETATM 14 C CAE Y01 . . . AA 7 145.894 154.909 102.411 1 132.28 ? CAE Y01 501 E 1 HETATM 15 C CAU Y01 . . . AA 7 145.075 156.862 101.672 1 132.28 ? CAU Y01 501 E 1 HETATM 16 C CAS Y01 . . . AA 7 144.863 156.659 100.542 1 132.28 ? CAS Y01 501 E 1 HETATM 17 C CBF Y01 . . . AA 7 146.108 156.902 99.618 1 132.28 ? CBF Y01 501 E 1 HETATM 18 C CBD Y01 . . . AA 7 147.205 156.26 100.102 1 132.28 ? CBD Y01 501 E 1 HETATM 19 C CAK Y01 . . . AA 7 148.219 156.425 99.359 1 132.28 ? CAK Y01 501 E 1 HETATM 20 C CAI Y01 . . . AA 7 147.927 156.053 97.764 1 132.28 ? CAI Y01 501 E 1 HETATM 21 C CAZ Y01 . . . AA 7 146.691 156.472 97.245 1 132.28 ? CAZ Y01 501 E 1 HETATM 22 C CAV Y01 . . . AA 7 146.303 156.219 95.727 1 132.28 ? CAV Y01 501 E 1 HETATM 23 C CBH Y01 . . . AA 7 145.696 156.415 98.036 1 132.28 ? CBH Y01 501 E 1 HETATM 24 C CAD Y01 . . . AA 7 145.222 154.962 98.104 1 132.28 ? CAD Y01 501 E 1 HETATM 25 C CAT Y01 . . . AA 7 144.423 157.347 97.523 1 132.28 ? CAT Y01 501 E 1 HETATM 26 C CAR Y01 . . . AA 7 144.065 157.1 96.077 1 132.28 ? CAR Y01 501 E 1 HETATM 27 C CBC Y01 . . . AA 7 145.151 157.183 95.256 1 132.28 ? CBC Y01 501 E 1 HETATM 28 O OAW Y01 . . . AA 7 144.739 156.804 93.875 1 132.28 ? OAW Y01 501 E 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #