data_6CNL # _model_server_result.job_id aA_mty_bPMKuqxNH3UEDgg _model_server_result.datetime_utc '2024-11-29 03:30:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cnl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":305}' # _entry.id 6CNL # _exptl.entry_id 6CNL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 31 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CNL _cell.length_a 49.372 _cell.length_b 242.538 _cell.length_c 272.458 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CNL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 Y N N ? 3 Z N N ? 3 AA N N ? 3 BA N N ? 3 CA N N ? 3 DA N N ? 3 EA N N ? 3 FA N N ? 3 GA N N ? 3 HA N N ? 3 IA N N ? 3 JA N N ? 3 KA N N ? 3 LA N N ? 3 MA N N ? 3 NA N N ? 3 OA N N ? 3 PA N N ? 3 QA N N ? 3 RA N N ? 3 SA N N ? 3 TA N N ? 3 UA N N ? 3 VA N N ? 3 WA N N ? 3 XA N N ? 3 YA N N ? 3 ZA N N ? 3 AB N N ? 3 BB N N ? 3 CB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O ALA 30 C ALA 96 1_555 CA MG MG . C MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc2 B O ALA 175 C ALA 241 1_555 DA MG MG . C MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc3 B O ILE 198 C ILE 264 1_555 CA MG MG . C MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc4 Z MG MG . C MG 301 1_555 EB O HOH . C HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc5 EB O HOH . C HOH 411 1_555 SA MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc6 D O ARG 207 J ARG 273 1_555 WA MG MG . I MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? metalc ? metalc7 HA MG MG . J MG 302 1_555 GB O HOH . J HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc8 E OD1 ASP 134 F ASP 200 1_555 JA MG MG . F MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc9 E O GLY 210 F GLY 276 1_555 LA MG MG . F MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc10 JA MG MG . F MG 302 1_555 K OD1 ASN 144 G ASN 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.891 ? metalc ? metalc11 LA MG MG . F MG 304 1_555 L O ARG 207 E ARG 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc12 HB O HOH . F HOH 420 1_555 XA MG MG . G MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc13 IB O HOH . H HOH 407 1_555 UA MG MG . I MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc14 H O ALA 175 D ALA 241 1_555 CB MG MG . P MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc15 KB O HOH . D HOH 404 1_555 CB MG MG . P MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? metalc ? metalc16 J O GLY 210 I GLY 276 1_555 WA MG MG . I MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? metalc ? metalc17 UA MG MG . I MG 301 1_555 MB O HOH . I HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc18 K O GLU 181 G GLU 247 1_555 ZA MG MG . G MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc19 ZA MG MG . G MG 303 1_555 NB O HOH . G HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6CNL _atom_sites.fract_transf_matrix[1][1] 0.020254 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004123 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00367 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Y 3 MG A 1 301 16 MG MG . Z 3 MG C 1 301 7 MG MG . AA 3 MG C 1 302 20 MG MG . BA 3 MG C 1 303 24 MG MG . CA 3 MG C 1 304 25 MG MG . DA 3 MG C 1 305 28 MG MG . EA 3 MG L 1 301 8 MG MG . FA 3 MG L 1 302 34 MG MG . GA 3 MG J 1 301 19 MG MG . HA 3 MG J 1 302 33 MG MG . IA 3 MG F 1 301 15 MG MG . JA 3 MG F 1 302 21 MG MG . KA 3 MG F 1 303 23 MG MG . LA 3 MG F 1 304 27 MG MG . MA 3 MG H 1 301 17 MG MG . NA 3 MG H 1 302 32 MG MG . OA 3 MG K 1 301 11 MG MG . PA 3 MG D 1 301 14 MG MG . QA 3 MG D 1 302 18 MG MG . RA 3 MG D 1 303 22 MG MG . SA 3 MG B 1 301 3 MG MG . TA 3 MG B 1 302 9 MG MG . UA 3 MG I 1 301 5 MG MG . VA 3 MG I 1 302 12 MG MG . WA 3 MG I 1 303 13 MG MG . XA 3 MG G 1 301 6 MG MG . YA 3 MG G 1 302 10 MG MG . ZA 3 MG G 1 303 26 MG MG . AB 3 MG E 1 301 30 MG MG . BB 3 MG E 1 302 31 MG MG . CB 3 MG P 1 101 29 MG MG . DB 4 HOH A 1 401 128 HOH HOH . DB 4 HOH A 2 402 203 HOH HOH . DB 4 HOH A 3 403 29 HOH HOH . DB 4 HOH A 4 404 34 HOH HOH . DB 4 HOH A 5 405 136 HOH HOH . DB 4 HOH A 6 406 18 HOH HOH . DB 4 HOH A 7 407 242 HOH HOH . DB 4 HOH A 8 408 27 HOH HOH . DB 4 HOH A 9 409 156 HOH HOH . DB 4 HOH A 10 410 140 HOH HOH . DB 4 HOH A 11 411 70 HOH HOH . DB 4 HOH A 12 412 218 HOH HOH . DB 4 HOH A 13 413 129 HOH HOH . DB 4 HOH A 14 414 201 HOH HOH . DB 4 HOH A 15 415 265 HOH HOH . DB 4 HOH A 16 416 51 HOH HOH . EB 4 HOH C 1 401 104 HOH HOH . EB 4 HOH C 2 402 100 HOH HOH . EB 4 HOH C 3 403 66 HOH HOH . EB 4 HOH C 4 404 57 HOH HOH . EB 4 HOH C 5 405 84 HOH HOH . EB 4 HOH C 6 406 54 HOH HOH . EB 4 HOH C 7 407 185 HOH HOH . EB 4 HOH C 8 408 92 HOH HOH . EB 4 HOH C 9 409 173 HOH HOH . EB 4 HOH C 10 410 199 HOH HOH . EB 4 HOH C 11 411 159 HOH HOH . EB 4 HOH C 12 412 200 HOH HOH . EB 4 HOH C 13 413 108 HOH HOH . EB 4 HOH C 14 414 236 HOH HOH . EB 4 HOH C 15 415 143 HOH HOH . EB 4 HOH C 16 416 219 HOH HOH . FB 4 HOH L 1 401 80 HOH HOH . FB 4 HOH L 2 402 99 HOH HOH . FB 4 HOH L 3 403 13 HOH HOH . FB 4 HOH L 4 404 79 HOH HOH . FB 4 HOH L 5 405 55 HOH HOH . FB 4 HOH L 6 406 91 HOH HOH . FB 4 HOH L 7 407 69 HOH HOH . FB 4 HOH L 8 408 24 HOH HOH . FB 4 HOH L 9 409 151 HOH HOH . FB 4 HOH L 10 410 235 HOH HOH . FB 4 HOH L 11 411 127 HOH HOH . FB 4 HOH L 12 412 194 HOH HOH . FB 4 HOH L 13 413 222 HOH HOH . FB 4 HOH L 14 414 226 HOH HOH . FB 4 HOH L 15 415 274 HOH HOH . FB 4 HOH L 16 416 162 HOH HOH . FB 4 HOH L 17 417 206 HOH HOH . FB 4 HOH L 18 418 288 HOH HOH . FB 4 HOH L 19 419 61 HOH HOH . GB 4 HOH J 1 401 74 HOH HOH . GB 4 HOH J 2 402 102 HOH HOH . GB 4 HOH J 3 403 78 HOH HOH . GB 4 HOH J 4 404 142 HOH HOH . GB 4 HOH J 5 405 97 HOH HOH . GB 4 HOH J 6 406 47 HOH HOH . GB 4 HOH J 7 407 16 HOH HOH . GB 4 HOH J 8 408 232 HOH HOH . GB 4 HOH J 9 409 149 HOH HOH . GB 4 HOH J 10 410 285 HOH HOH . HB 4 HOH F 1 401 71 HOH HOH . HB 4 HOH F 2 402 165 HOH HOH . HB 4 HOH F 3 403 184 HOH HOH . HB 4 HOH F 4 404 46 HOH HOH . HB 4 HOH F 5 405 17 HOH HOH . HB 4 HOH F 6 406 90 HOH HOH . HB 4 HOH F 7 407 20 HOH HOH . HB 4 HOH F 8 408 6 HOH HOH . HB 4 HOH F 9 409 62 HOH HOH . HB 4 HOH F 10 410 9 HOH HOH . HB 4 HOH F 11 411 19 HOH HOH . HB 4 HOH F 12 412 43 HOH HOH . HB 4 HOH F 13 413 132 HOH HOH . HB 4 HOH F 14 414 223 HOH HOH . HB 4 HOH F 15 415 109 HOH HOH . HB 4 HOH F 16 416 268 HOH HOH . HB 4 HOH F 17 417 172 HOH HOH . HB 4 HOH F 18 418 120 HOH HOH . HB 4 HOH F 19 419 138 HOH HOH . HB 4 HOH F 20 420 77 HOH HOH . HB 4 HOH F 21 421 141 HOH HOH . HB 4 HOH F 22 422 130 HOH HOH . HB 4 HOH F 23 423 234 HOH HOH . IB 4 HOH H 1 401 12 HOH HOH . IB 4 HOH H 2 402 118 HOH HOH . IB 4 HOH H 3 403 154 HOH HOH . IB 4 HOH H 4 404 248 HOH HOH . IB 4 HOH H 5 405 50 HOH HOH . IB 4 HOH H 6 406 278 HOH HOH . IB 4 HOH H 7 407 190 HOH HOH . IB 4 HOH H 8 408 105 HOH HOH . IB 4 HOH H 9 409 119 HOH HOH . IB 4 HOH H 10 410 32 HOH HOH . IB 4 HOH H 11 411 83 HOH HOH . IB 4 HOH H 12 412 259 HOH HOH . JB 4 HOH K 1 401 15 HOH HOH . JB 4 HOH K 2 402 23 HOH HOH . JB 4 HOH K 3 403 28 HOH HOH . JB 4 HOH K 4 404 121 HOH HOH . JB 4 HOH K 5 405 14 HOH HOH . JB 4 HOH K 6 406 44 HOH HOH . JB 4 HOH K 7 407 157 HOH HOH . JB 4 HOH K 8 408 22 HOH HOH . JB 4 HOH K 9 409 237 HOH HOH . JB 4 HOH K 10 410 228 HOH HOH . JB 4 HOH K 11 411 116 HOH HOH . JB 4 HOH K 12 412 167 HOH HOH . KB 4 HOH D 1 401 73 HOH HOH . KB 4 HOH D 2 402 182 HOH HOH . KB 4 HOH D 3 403 101 HOH HOH . KB 4 HOH D 4 404 112 HOH HOH . KB 4 HOH D 5 405 42 HOH HOH . KB 4 HOH D 6 406 166 HOH HOH . KB 4 HOH D 7 407 58 HOH HOH . KB 4 HOH D 8 408 134 HOH HOH . KB 4 HOH D 9 409 41 HOH HOH . KB 4 HOH D 10 410 33 HOH HOH . KB 4 HOH D 11 411 197 HOH HOH . KB 4 HOH D 12 412 189 HOH HOH . KB 4 HOH D 13 413 37 HOH HOH . KB 4 HOH D 14 414 283 HOH HOH . KB 4 HOH D 15 415 115 HOH HOH . KB 4 HOH D 16 416 241 HOH HOH . KB 4 HOH D 17 417 192 HOH HOH . LB 4 HOH B 1 401 31 HOH HOH . LB 4 HOH B 2 402 198 HOH HOH . LB 4 HOH B 3 403 187 HOH HOH . LB 4 HOH B 4 404 38 HOH HOH . LB 4 HOH B 5 405 260 HOH HOH . LB 4 HOH B 6 406 246 HOH HOH . LB 4 HOH B 7 407 139 HOH HOH . LB 4 HOH B 8 408 52 HOH HOH . LB 4 HOH B 9 409 171 HOH HOH . LB 4 HOH B 10 410 40 HOH HOH . LB 4 HOH B 11 411 193 HOH HOH . LB 4 HOH B 12 412 122 HOH HOH . LB 4 HOH B 13 413 137 HOH HOH . LB 4 HOH B 14 414 49 HOH HOH . LB 4 HOH B 15 415 75 HOH HOH . LB 4 HOH B 16 416 244 HOH HOH . MB 4 HOH I 1 401 107 HOH HOH . MB 4 HOH I 2 402 158 HOH HOH . MB 4 HOH I 3 403 111 HOH HOH . MB 4 HOH I 4 404 153 HOH HOH . MB 4 HOH I 5 405 133 HOH HOH . MB 4 HOH I 6 406 1 HOH HOH . MB 4 HOH I 7 407 275 HOH HOH . MB 4 HOH I 8 408 93 HOH HOH . MB 4 HOH I 9 409 152 HOH HOH . MB 4 HOH I 10 410 94 HOH HOH . MB 4 HOH I 11 411 117 HOH HOH . MB 4 HOH I 12 412 290 HOH HOH . MB 4 HOH I 13 413 291 HOH HOH . MB 4 HOH I 14 414 292 HOH HOH . NB 4 HOH G 1 401 4 HOH HOH . NB 4 HOH G 2 402 3 HOH HOH . NB 4 HOH G 3 403 125 HOH HOH . NB 4 HOH G 4 404 124 HOH HOH . NB 4 HOH G 5 405 2 HOH HOH . NB 4 HOH G 6 406 249 HOH HOH . NB 4 HOH G 7 407 25 HOH HOH . NB 4 HOH G 8 408 277 HOH HOH . NB 4 HOH G 9 409 10 HOH HOH . NB 4 HOH G 10 410 202 HOH HOH . NB 4 HOH G 11 411 191 HOH HOH . OB 4 HOH E 1 401 5 HOH HOH . OB 4 HOH E 2 402 252 HOH HOH . OB 4 HOH E 3 403 76 HOH HOH . OB 4 HOH E 4 404 65 HOH HOH . OB 4 HOH E 5 405 8 HOH HOH . OB 4 HOH E 6 406 88 HOH HOH . OB 4 HOH E 7 407 195 HOH HOH . OB 4 HOH E 8 408 110 HOH HOH . OB 4 HOH E 9 409 89 HOH HOH . OB 4 HOH E 10 410 126 HOH HOH . OB 4 HOH E 11 411 7 HOH HOH . OB 4 HOH E 12 412 85 HOH HOH . OB 4 HOH E 13 413 240 HOH HOH . OB 4 HOH E 14 414 106 HOH HOH . OB 4 HOH E 15 415 53 HOH HOH . OB 4 HOH E 16 416 289 HOH HOH . OB 4 HOH E 17 417 293 HOH HOH . OB 4 HOH E 18 418 239 HOH HOH . OB 4 HOH E 19 419 281 HOH HOH . OB 4 HOH E 20 420 178 HOH HOH . OB 4 HOH E 21 421 144 HOH HOH . PB 4 HOH M 1 101 209 HOH HOH . QB 4 HOH O 1 101 135 HOH HOH . QB 4 HOH O 2 102 145 HOH HOH . QB 4 HOH O 3 103 287 HOH HOH . RB 4 HOH X 1 101 64 HOH HOH . SB 4 HOH V 1 101 245 HOH HOH . TB 4 HOH R 1 101 163 HOH HOH . UB 4 HOH P 1 201 264 HOH HOH . VB 4 HOH N 1 101 123 HOH HOH . WB 4 HOH U 1 101 103 HOH HOH . XB 4 HOH Q 1 101 251 HOH HOH . XB 4 HOH Q 2 102 131 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id DA _atom_site.label_entity_id 3 _atom_site.Cartn_x 8.353 _atom_site.Cartn_y -38.354 _atom_site.Cartn_z 25.474 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.02 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 305 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #