data_6CNM
#
_model_server_result.job_id            OtcO7o0iXjDVvboN4yll4w 
_model_server_result.datetime_utc      '2024-11-26 20:51:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6cnm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":1101}' 
#
_entry.id    6CNM 
#
_exptl.entry_id    6CNM 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6CNM 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6CNM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 N N N 
? 4 Q N N 
? 4 T N N 
? 4 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O THR 250 A THR 250 1_555 K K K . A K 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? 
metalc ? metalc2 A O THR 250 A THR 250 1_555 L K K . A K 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.068 ? 
metalc ? metalc3 A OG1 THR 250 A THR 250 1_555 L K K . A K 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.074 ? 
metalc ? metalc4 A O ILE 251 A ILE 251 1_555 J K K . A K 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? 
metalc ? metalc5 A O ILE 251 A ILE 251 1_555 K K K . A K 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? 
metalc ? metalc6 A O GLY 252 A GLY 252 1_555 I K K . A K 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? 
metalc ? metalc7 A O GLY 252 A GLY 252 1_555 J K K . A K 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? 
metalc ? metalc8 A O TYR 253 A TYR 253 1_555 I K K . A K 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? 
metalc ? metalc9 I K K . A K 1001 1_555 B O GLY 252 B GLY 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? 
metalc ? metalc10 I K K . A K 1001 1_555 B O TYR 253 B TYR 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? 
metalc ? metalc11 I K K . A K 1001 1_555 C O GLY 252 C GLY 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? 
metalc ? metalc12 I K K . A K 1001 1_555 C O TYR 253 C TYR 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? 
metalc ? metalc13 I K K . A K 1001 1_555 D O GLY 252 D GLY 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? 
metalc ? metalc14 I K K . A K 1001 1_555 D O TYR 253 D TYR 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? 
metalc ? metalc15 J K K . A K 1002 1_555 B O ILE 251 B ILE 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? 
metalc ? metalc16 J K K . A K 1002 1_555 B O GLY 252 B GLY 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? 
metalc ? metalc17 J K K . A K 1002 1_555 C O ILE 251 C ILE 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? 
metalc ? metalc18 J K K . A K 1002 1_555 C O GLY 252 C GLY 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? 
metalc ? metalc19 J K K . A K 1002 1_555 D O ILE 251 D ILE 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? 
metalc ? metalc20 J K K . A K 1002 1_555 D O GLY 252 D GLY 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? 
metalc ? metalc21 K K K . A K 1003 1_555 B O THR 250 B THR 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? 
metalc ? metalc22 K K K . A K 1003 1_555 B O ILE 251 B ILE 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? 
metalc ? metalc23 K K K . A K 1003 1_555 C O THR 250 C THR 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? 
metalc ? metalc24 K K K . A K 1003 1_555 C O ILE 251 C ILE 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? 
metalc ? metalc25 K K K . A K 1003 1_555 D O THR 250 D THR 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? 
metalc ? metalc26 K K K . A K 1003 1_555 D O ILE 251 D ILE 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? 
metalc ? metalc27 L K K . A K 1004 1_555 B O THR 250 B THR 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.069 ? 
metalc ? metalc28 L K K . A K 1004 1_555 B OG1 THR 250 B THR 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.073 ? 
metalc ? metalc29 L K K . A K 1004 1_555 C O THR 250 C THR 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.068 ? 
metalc ? metalc30 L K K . A K 1004 1_555 C OG1 THR 250 C THR 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.075 ? 
metalc ? metalc31 L K K . A K 1004 1_555 D O THR 250 D THR 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.067 ? 
metalc ? metalc32 L K K . A K 1004 1_555 D OG1 THR 250 D THR 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.076 ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                POV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     POPC 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C12 POV sing 340 n n 
N C13 POV sing 341 n n 
N C14 POV sing 342 n n 
N C15 POV sing 343 n n 
P O11 POV sing 344 n n 
P O12 POV sing 345 n n 
P O13 POV sing 346 n n 
P O14 POV doub 347 n n 
C1 C2 POV sing 348 n n 
C1 O11 POV sing 349 n n 
C1 H1 POV sing 350 n n 
C1 H1A POV sing 351 n n 
C2 C3 POV sing 352 n n 
C2 O21 POV sing 353 n n 
C2 H2 POV sing 354 n n 
C3 O31 POV sing 355 n n 
C3 H3 POV sing 356 n n 
C3 H3A POV sing 357 n n 
C210 C211 POV sing 358 n n 
C210 C29 POV doub 359 z n 
C210 H210 POV sing 360 n n 
C310 C311 POV sing 361 n n 
C310 C39 POV sing 362 n n 
C310 H310 POV sing 363 n n 
C310 H31A POV sing 364 n n 
C11 C12 POV sing 365 n n 
C11 O12 POV sing 366 n n 
C11 H11 POV sing 367 n n 
C11 H11A POV sing 368 n n 
C211 C212 POV sing 369 n n 
C211 H211 POV sing 370 n n 
C211 H21A POV sing 371 n n 
C311 C312 POV sing 372 n n 
C311 H311 POV sing 373 n n 
C311 H31B POV sing 374 n n 
C12 H12 POV sing 375 n n 
C12 H12A POV sing 376 n n 
C212 C213 POV sing 377 n n 
C212 H212 POV sing 378 n n 
C212 H21B POV sing 379 n n 
C312 C313 POV sing 380 n n 
C312 H312 POV sing 381 n n 
C312 H31C POV sing 382 n n 
C13 H13 POV sing 383 n n 
C13 H13A POV sing 384 n n 
C13 H13B POV sing 385 n n 
C213 C214 POV sing 386 n n 
C213 H213 POV sing 387 n n 
C213 H21C POV sing 388 n n 
C313 C314 POV sing 389 n n 
C313 H313 POV sing 390 n n 
C313 H31D POV sing 391 n n 
C14 H14 POV sing 392 n n 
C14 H14A POV sing 393 n n 
C14 H14B POV sing 394 n n 
C214 C215 POV sing 395 n n 
C214 H214 POV sing 396 n n 
C214 H21D POV sing 397 n n 
C314 C315 POV sing 398 n n 
C314 H314 POV sing 399 n n 
C314 H31E POV sing 400 n n 
C15 H15 POV sing 401 n n 
C15 H15A POV sing 402 n n 
C15 H15B POV sing 403 n n 
C215 C216 POV sing 404 n n 
C215 H215 POV sing 405 n n 
C215 H21E POV sing 406 n n 
C315 C316 POV sing 407 n n 
C315 H315 POV sing 408 n n 
C315 H31F POV sing 409 n n 
C216 C217 POV sing 410 n n 
C216 H216 POV sing 411 n n 
C216 H21F POV sing 412 n n 
C316 H316 POV sing 413 n n 
C316 H31G POV sing 414 n n 
C316 H31H POV sing 415 n n 
C217 C218 POV sing 416 n n 
C217 H217 POV sing 417 n n 
C217 H21G POV sing 418 n n 
C218 H218 POV sing 419 n n 
C218 H21H POV sing 420 n n 
C218 H21J POV sing 421 n n 
C21 O21 POV sing 422 n n 
C21 C22 POV sing 423 n n 
C21 O22 POV doub 424 n n 
C22 C23 POV sing 425 n n 
C22 H22 POV sing 426 n n 
C22 H22A POV sing 427 n n 
C23 C24 POV sing 428 n n 
C23 H23 POV sing 429 n n 
C23 H23A POV sing 430 n n 
C24 C25 POV sing 431 n n 
C24 H24 POV sing 432 n n 
C24 H24A POV sing 433 n n 
C25 C26 POV sing 434 n n 
C25 H25 POV sing 435 n n 
C25 H25A POV sing 436 n n 
C26 C27 POV sing 437 n n 
C26 H26 POV sing 438 n n 
C26 H26A POV sing 439 n n 
C27 C28 POV sing 440 n n 
C27 H27 POV sing 441 n n 
C27 H27A POV sing 442 n n 
C28 C29 POV sing 443 n n 
C28 H28 POV sing 444 n n 
C28 H28A POV sing 445 n n 
C29 H29 POV sing 446 n n 
C31 O31 POV sing 447 n n 
C31 C32 POV sing 448 n n 
C31 O32 POV doub 449 n n 
C32 C33 POV sing 450 n n 
C32 H32 POV sing 451 n n 
C32 H32A POV sing 452 n n 
C33 C34 POV sing 453 n n 
C33 H33 POV sing 454 n n 
C33 H33A POV sing 455 n n 
C34 C35 POV sing 456 n n 
C34 H34 POV sing 457 n n 
C34 H34A POV sing 458 n n 
C35 C36 POV sing 459 n n 
C35 H35 POV sing 460 n n 
C35 H35A POV sing 461 n n 
C36 C37 POV sing 462 n n 
C36 H36 POV sing 463 n n 
C36 H36A POV sing 464 n n 
C37 C38 POV sing 465 n n 
C37 H37 POV sing 466 n n 
C37 H37A POV sing 467 n n 
C38 C39 POV sing 468 n n 
C38 H38 POV sing 469 n n 
C38 H38A POV sing 470 n n 
C39 H39 POV sing 471 n n 
C39 H39A POV sing 472 n n 
#
_atom_sites.entry_id                     6CNM 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 K A 1 1001 1001 K K . 
J 3 K A 1 1002 1002 K K . 
K 3 K A 1 1003 1003 K K . 
L 3 K A 1 1004 1004 K K . 
M 3 K A 1 1005 1005 K K . 
N 4 POV A 1 1101 1101 POV POV . 
O 5 LMT A 1 1103 1103 LMT LMT . 
P 5 LMT A 1 1104 1104 LMT LMT . 
Q 4 POV B 1 1101 1101 POV POV . 
R 5 LMT B 1 1103 1103 LMT LMT . 
S 5 LMT B 1 1104 1104 LMT LMT . 
T 4 POV C 1 1101 1101 POV POV . 
U 5 LMT C 1 1103 1103 LMT LMT . 
V 5 LMT C 1 1104 1104 LMT LMT . 
W 4 POV D 1 1101 1101 POV POV . 
X 5 LMT D 1 1103 1103 LMT LMT . 
Y 5 LMT D 1 1104 1104 LMT LMT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P POV . . . N 4 178.638 160.114 178.161 1 78.16 ? P POV 1101 A 1 
HETATM 2 C C1 POV . . . N 4 178.492 158.981 175.784 1 78.16 ? C1 POV 1101 A 1 
HETATM 3 C C2 POV . . . N 4 178.742 157.609 175.169 1 78.16 ? C2 POV 1101 A 1 
HETATM 4 C C3 POV . . . N 4 179.916 157.693 174.201 1 78.16 ? C3 POV 1101 A 1 
HETATM 5 O O11 POV . . . N 4 178.366 158.852 177.198 1 78.16 ? O11 POV 1101 A 1 
HETATM 6 O O12 POV . . . N 4 179.254 159.424 179.479 1 78.16 ? O12 POV 1101 A 1 
HETATM 7 O O13 POV . . . N 4 177.306 160.724 178.527 1 78.16 ? O13 POV 1101 A 1 
HETATM 8 O O14 POV . . . N 4 179.71 160.968 177.529 1 78.16 ? O14 POV 1101 A 1 
HETATM 9 C C21 POV . . . N 4 177.849 156.037 173.614 1 78.16 ? C21 POV 1101 A 1 
HETATM 10 O O21 POV . . . N 4 177.576 157.183 174.467 1 78.16 ? O21 POV 1101 A 1 
HETATM 11 C C22 POV . . . N 4 177.979 156.217 172.12 1 78.16 ? C22 POV 1101 A 1 
HETATM 12 O O22 POV . . . N 4 177.97 154.934 174.121 1 78.16 ? O22 POV 1101 A 1 
HETATM 13 C C23 POV . . . N 4 177.94 154.854 171.44 1 78.16 ? C23 POV 1101 A 1 
HETATM 14 C C24 POV . . . N 4 177.817 155.002 169.928 1 78.16 ? C24 POV 1101 A 1 
HETATM 15 C C25 POV . . . N 4 177.929 153.649 169.236 1 78.16 ? C25 POV 1101 A 1 
HETATM 16 C C31 POV . . . N 4 180.33 158.765 171.987 1 78.16 ? C31 POV 1101 A 1 
HETATM 17 O O31 POV . . . N 4 179.716 158.785 173.305 1 78.16 ? O31 POV 1101 A 1 
HETATM 18 C C32 POV . . . N 4 179.467 158.697 170.749 1 78.16 ? C32 POV 1101 A 1 
HETATM 19 O O32 POV . . . N 4 181.546 158.805 171.897 1 78.16 ? O32 POV 1101 A 1 
HETATM 20 C C33 POV . . . N 4 180.123 159.496 169.629 1 78.16 ? C33 POV 1101 A 1 
HETATM 21 C C34 POV . . . N 4 179.535 159.121 168.274 1 78.16 ? C34 POV 1101 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           21 
#