data_6CNM
#
_model_server_result.job_id            A9ijFmj83wtXURJ5xRvWSQ 
_model_server_result.datetime_utc      '2024-11-23 04:40:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6cnm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":1103}' 
#
_entry.id    6CNM 
#
_exptl.entry_id    6CNM 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              510.615 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECYL-BETA-D-MALTOSIDE 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6CNM 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6CNM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 O N N 
? 5 P N N 
? 5 R N N 
? 5 S N N 
? 5 U N N 
? 5 V N N 
? 5 X N N 
? 5 Y N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O THR 250 A THR 250 1_555 K K K . A K 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? 
metalc ? metalc2 A O THR 250 A THR 250 1_555 L K K . A K 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.068 ? 
metalc ? metalc3 A OG1 THR 250 A THR 250 1_555 L K K . A K 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.074 ? 
metalc ? metalc4 A O ILE 251 A ILE 251 1_555 J K K . A K 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? 
metalc ? metalc5 A O ILE 251 A ILE 251 1_555 K K K . A K 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? 
metalc ? metalc6 A O GLY 252 A GLY 252 1_555 I K K . A K 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? 
metalc ? metalc7 A O GLY 252 A GLY 252 1_555 J K K . A K 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? 
metalc ? metalc8 A O TYR 253 A TYR 253 1_555 I K K . A K 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? 
metalc ? metalc9 I K K . A K 1001 1_555 B O GLY 252 B GLY 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? 
metalc ? metalc10 I K K . A K 1001 1_555 B O TYR 253 B TYR 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? 
metalc ? metalc11 I K K . A K 1001 1_555 C O GLY 252 C GLY 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? 
metalc ? metalc12 I K K . A K 1001 1_555 C O TYR 253 C TYR 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? 
metalc ? metalc13 I K K . A K 1001 1_555 D O GLY 252 D GLY 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? 
metalc ? metalc14 I K K . A K 1001 1_555 D O TYR 253 D TYR 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? 
metalc ? metalc15 J K K . A K 1002 1_555 B O ILE 251 B ILE 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? 
metalc ? metalc16 J K K . A K 1002 1_555 B O GLY 252 B GLY 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? 
metalc ? metalc17 J K K . A K 1002 1_555 C O ILE 251 C ILE 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? 
metalc ? metalc18 J K K . A K 1002 1_555 C O GLY 252 C GLY 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? 
metalc ? metalc19 J K K . A K 1002 1_555 D O ILE 251 D ILE 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? 
metalc ? metalc20 J K K . A K 1002 1_555 D O GLY 252 D GLY 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? 
metalc ? metalc21 K K K . A K 1003 1_555 B O THR 250 B THR 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? 
metalc ? metalc22 K K K . A K 1003 1_555 B O ILE 251 B ILE 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? 
metalc ? metalc23 K K K . A K 1003 1_555 C O THR 250 C THR 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? 
metalc ? metalc24 K K K . A K 1003 1_555 C O ILE 251 C ILE 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? 
metalc ? metalc25 K K K . A K 1003 1_555 D O THR 250 D THR 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? 
metalc ? metalc26 K K K . A K 1003 1_555 D O ILE 251 D ILE 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? 
metalc ? metalc27 L K K . A K 1004 1_555 B O THR 250 B THR 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.069 ? 
metalc ? metalc28 L K K . A K 1004 1_555 B OG1 THR 250 B THR 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.073 ? 
metalc ? metalc29 L K K . A K 1004 1_555 C O THR 250 C THR 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.068 ? 
metalc ? metalc30 L K K . A K 1004 1_555 C OG1 THR 250 C THR 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.075 ? 
metalc ? metalc31 L K K . A K 1004 1_555 D O THR 250 D THR 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.067 ? 
metalc ? metalc32 L K K . A K 1004 1_555 D OG1 THR 250 D THR 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.076 ? 
#
_chem_comp.formula           'C24 H46 O11' 
_chem_comp.formula_weight    510.615 
_chem_comp.id                LMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECYL-BETA-D-MALTOSIDE 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1B C2B LMT sing 192 n n 
C1B O1B LMT sing 193 n n 
C1B O5B LMT sing 194 n n 
C1B H1B LMT sing 195 n n 
C2B C3B LMT sing 196 n n 
C2B O2B LMT sing 197 n n 
C2B H2B LMT sing 198 n n 
C3B C4B LMT sing 199 n n 
C3B O3B LMT sing 200 n n 
C3B H3B LMT sing 201 n n 
C4B C5B LMT sing 202 n n 
C4B O4' LMT sing 203 n n 
C4B H4B LMT sing 204 n n 
C5B C6B LMT sing 205 n n 
C5B O5B LMT sing 206 n n 
C5B H5B LMT sing 207 n n 
C6B O6B LMT sing 208 n n 
C6B "H6'2" LMT sing 209 n n 
C6B "H6'1" LMT sing 210 n n 
O1B C4' LMT sing 211 n n 
O2B H2O1 LMT sing 212 n n 
O3B H3O1 LMT sing 213 n n 
O4' H4O1 LMT sing 214 n n 
O6B H6B LMT sing 215 n n 
C1' C2' LMT sing 216 n n 
C1' O1' LMT sing 217 n n 
C1' O5' LMT sing 218 n n 
C1' H1' LMT sing 219 n n 
C2' C3' LMT sing 220 n n 
C2' O2' LMT sing 221 n n 
C2' H2' LMT sing 222 n n 
C3' C4' LMT sing 223 n n 
C3' O3' LMT sing 224 n n 
C3' H3' LMT sing 225 n n 
C4' C5' LMT sing 226 n n 
C4' H4' LMT sing 227 n n 
C5' C6' LMT sing 228 n n 
C5' O5' LMT sing 229 n n 
C5' H5' LMT sing 230 n n 
C6' O6' LMT sing 231 n n 
C6' H6D LMT sing 232 n n 
C6' H6E LMT sing 233 n n 
O1' C1 LMT sing 234 n n 
O2' H2O2 LMT sing 235 n n 
O3' H3O2 LMT sing 236 n n 
O6' H6' LMT sing 237 n n 
C1 C2 LMT sing 238 n n 
C1 H12 LMT sing 239 n n 
C1 H11 LMT sing 240 n n 
C2 C3 LMT sing 241 n n 
C2 H22 LMT sing 242 n n 
C2 H21 LMT sing 243 n n 
C3 C4 LMT sing 244 n n 
C3 H32 LMT sing 245 n n 
C3 H31 LMT sing 246 n n 
C4 C5 LMT sing 247 n n 
C4 H42 LMT sing 248 n n 
C4 H41 LMT sing 249 n n 
C5 C6 LMT sing 250 n n 
C5 H52 LMT sing 251 n n 
C5 H51 LMT sing 252 n n 
C6 C7 LMT sing 253 n n 
C6 H62 LMT sing 254 n n 
C6 H61 LMT sing 255 n n 
C7 C8 LMT sing 256 n n 
C7 H72 LMT sing 257 n n 
C7 H71 LMT sing 258 n n 
C8 C9 LMT sing 259 n n 
C8 H82 LMT sing 260 n n 
C8 H81 LMT sing 261 n n 
C9 C10 LMT sing 262 n n 
C9 H92 LMT sing 263 n n 
C9 H91 LMT sing 264 n n 
C10 C11 LMT sing 265 n n 
C10 H102 LMT sing 266 n n 
C10 H101 LMT sing 267 n n 
C11 C12 LMT sing 268 n n 
C11 H112 LMT sing 269 n n 
C11 H111 LMT sing 270 n n 
C12 H123 LMT sing 271 n n 
C12 H122 LMT sing 272 n n 
C12 H121 LMT sing 273 n n 
#
_atom_sites.entry_id                     6CNM 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 K A 1 1001 1001 K K . 
J 3 K A 1 1002 1002 K K . 
K 3 K A 1 1003 1003 K K . 
L 3 K A 1 1004 1004 K K . 
M 3 K A 1 1005 1005 K K . 
N 4 POV A 1 1101 1101 POV POV . 
O 5 LMT A 1 1103 1103 LMT LMT . 
P 5 LMT A 1 1104 1104 LMT LMT . 
Q 4 POV B 1 1101 1101 POV POV . 
R 5 LMT B 1 1103 1103 LMT LMT . 
S 5 LMT B 1 1104 1104 LMT LMT . 
T 4 POV C 1 1101 1101 POV POV . 
U 5 LMT C 1 1103 1103 LMT LMT . 
V 5 LMT C 1 1104 1104 LMT LMT . 
W 4 POV D 1 1101 1101 POV POV . 
X 5 LMT D 1 1103 1103 LMT LMT . 
Y 5 LMT D 1 1104 1104 LMT LMT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1B LMT . . . O 5 172.193 154.494 180.366 1 31.87 ? O1B LMT 1103 A 1 
HETATM 2 C C1' LMT . . . O 5 172.906 153.278 177.407 1 31.87 ? C1' LMT 1103 A 1 
HETATM 3 C C2' LMT . . . O 5 171.661 152.499 177.861 1 31.87 ? C2' LMT 1103 A 1 
HETATM 4 C C3' LMT . . . O 5 171.629 152.327 179.42 1 31.87 ? C3' LMT 1103 A 1 
HETATM 5 C C4' LMT . . . O 5 172.658 153.167 180.227 1 31.87 ? C4' LMT 1103 A 1 
HETATM 6 C C5' LMT . . . O 5 174.02 153.191 179.466 1 31.87 ? C5' LMT 1103 A 1 
HETATM 7 C C6' LMT . . . O 5 175.106 152.444 180.189 1 31.87 ? C6' LMT 1103 A 1 
HETATM 8 O O1' LMT . . . O 5 173.173 153.055 176.096 1 31.87 ? O1' LMT 1103 A 1 
HETATM 9 O O2' LMT . . . O 5 170.514 153.137 177.434 1 31.87 ? O2' LMT 1103 A 1 
HETATM 10 O O3' LMT . . . O 5 171.798 151.022 179.747 1 31.87 ? O3' LMT 1103 A 1 
HETATM 11 O O5' LMT . . . O 5 173.967 152.712 178.141 1 31.87 ? O5' LMT 1103 A 1 
HETATM 12 O O6' LMT . . . O 5 174.808 151.114 180.027 1 31.87 ? O6' LMT 1103 A 1 
HETATM 13 C C1 LMT . . . O 5 173.282 154.216 175.32 1 31.87 ? C1 LMT 1103 A 1 
HETATM 14 C C2 LMT . . . O 5 172.571 153.884 174.052 1 31.87 ? C2 LMT 1103 A 1 
HETATM 15 C C3 LMT . . . O 5 173.156 154.456 172.817 1 31.87 ? C3 LMT 1103 A 1 
HETATM 16 C C4 LMT . . . O 5 172.455 153.84 171.643 1 31.87 ? C4 LMT 1103 A 1 
HETATM 17 C C5 LMT . . . O 5 173.38 153.853 170.48 1 31.87 ? C5 LMT 1103 A 1 
HETATM 18 C C6 LMT . . . O 5 172.694 154.183 169.205 1 31.87 ? C6 LMT 1103 A 1 
HETATM 19 C C7 LMT . . . O 5 173.689 154.733 168.229 1 31.87 ? C7 LMT 1103 A 1 
HETATM 20 C C8 LMT . . . O 5 172.963 155.247 167.036 1 31.87 ? C8 LMT 1103 A 1 
HETATM 21 C C9 LMT . . . O 5 173.754 156.183 166.183 1 31.87 ? C9 LMT 1103 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           418 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           21 
#