data_6CNM # _model_server_result.job_id Y18Y79WH9FmRt6J2EjlVkw _model_server_result.datetime_utc '2024-10-19 16:22:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cnm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":1104}' # _entry.id 6CNM # _exptl.entry_id 6CNM _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 510.615 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CNM _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CNM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 O N N ? 5 P N N ? 5 R N N ? 5 S N N ? 5 U N N ? 5 V N N ? 5 X N N ? 5 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 250 A THR 250 1_555 K K K . A K 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? metalc ? metalc2 A O THR 250 A THR 250 1_555 L K K . A K 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.068 ? metalc ? metalc3 A OG1 THR 250 A THR 250 1_555 L K K . A K 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.074 ? metalc ? metalc4 A O ILE 251 A ILE 251 1_555 J K K . A K 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc5 A O ILE 251 A ILE 251 1_555 K K K . A K 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? metalc ? metalc6 A O GLY 252 A GLY 252 1_555 I K K . A K 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc7 A O GLY 252 A GLY 252 1_555 J K K . A K 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc8 A O TYR 253 A TYR 253 1_555 I K K . A K 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc9 I K K . A K 1001 1_555 B O GLY 252 B GLY 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc10 I K K . A K 1001 1_555 B O TYR 253 B TYR 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc11 I K K . A K 1001 1_555 C O GLY 252 C GLY 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc12 I K K . A K 1001 1_555 C O TYR 253 C TYR 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc13 I K K . A K 1001 1_555 D O GLY 252 D GLY 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? metalc ? metalc14 I K K . A K 1001 1_555 D O TYR 253 D TYR 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc15 J K K . A K 1002 1_555 B O ILE 251 B ILE 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc16 J K K . A K 1002 1_555 B O GLY 252 B GLY 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc17 J K K . A K 1002 1_555 C O ILE 251 C ILE 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc18 J K K . A K 1002 1_555 C O GLY 252 C GLY 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc19 J K K . A K 1002 1_555 D O ILE 251 D ILE 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? metalc ? metalc20 J K K . A K 1002 1_555 D O GLY 252 D GLY 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc21 K K K . A K 1003 1_555 B O THR 250 B THR 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc22 K K K . A K 1003 1_555 B O ILE 251 B ILE 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? metalc ? metalc23 K K K . A K 1003 1_555 C O THR 250 C THR 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? metalc ? metalc24 K K K . A K 1003 1_555 C O ILE 251 C ILE 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? metalc ? metalc25 K K K . A K 1003 1_555 D O THR 250 D THR 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? metalc ? metalc26 K K K . A K 1003 1_555 D O ILE 251 D ILE 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc27 L K K . A K 1004 1_555 B O THR 250 B THR 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.069 ? metalc ? metalc28 L K K . A K 1004 1_555 B OG1 THR 250 B THR 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.073 ? metalc ? metalc29 L K K . A K 1004 1_555 C O THR 250 C THR 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.068 ? metalc ? metalc30 L K K . A K 1004 1_555 C OG1 THR 250 C THR 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.075 ? metalc ? metalc31 L K K . A K 1004 1_555 D O THR 250 D THR 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.067 ? metalc ? metalc32 L K K . A K 1004 1_555 D OG1 THR 250 D THR 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.076 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 192 n n C1B O1B LMT sing 193 n n C1B O5B LMT sing 194 n n C1B H1B LMT sing 195 n n C2B C3B LMT sing 196 n n C2B O2B LMT sing 197 n n C2B H2B LMT sing 198 n n C3B C4B LMT sing 199 n n C3B O3B LMT sing 200 n n C3B H3B LMT sing 201 n n C4B C5B LMT sing 202 n n C4B O4' LMT sing 203 n n C4B H4B LMT sing 204 n n C5B C6B LMT sing 205 n n C5B O5B LMT sing 206 n n C5B H5B LMT sing 207 n n C6B O6B LMT sing 208 n n C6B "H6'2" LMT sing 209 n n C6B "H6'1" LMT sing 210 n n O1B C4' LMT sing 211 n n O2B H2O1 LMT sing 212 n n O3B H3O1 LMT sing 213 n n O4' H4O1 LMT sing 214 n n O6B H6B LMT sing 215 n n C1' C2' LMT sing 216 n n C1' O1' LMT sing 217 n n C1' O5' LMT sing 218 n n C1' H1' LMT sing 219 n n C2' C3' LMT sing 220 n n C2' O2' LMT sing 221 n n C2' H2' LMT sing 222 n n C3' C4' LMT sing 223 n n C3' O3' LMT sing 224 n n C3' H3' LMT sing 225 n n C4' C5' LMT sing 226 n n C4' H4' LMT sing 227 n n C5' C6' LMT sing 228 n n C5' O5' LMT sing 229 n n C5' H5' LMT sing 230 n n C6' O6' LMT sing 231 n n C6' H6D LMT sing 232 n n C6' H6E LMT sing 233 n n O1' C1 LMT sing 234 n n O2' H2O2 LMT sing 235 n n O3' H3O2 LMT sing 236 n n O6' H6' LMT sing 237 n n C1 C2 LMT sing 238 n n C1 H12 LMT sing 239 n n C1 H11 LMT sing 240 n n C2 C3 LMT sing 241 n n C2 H22 LMT sing 242 n n C2 H21 LMT sing 243 n n C3 C4 LMT sing 244 n n C3 H32 LMT sing 245 n n C3 H31 LMT sing 246 n n C4 C5 LMT sing 247 n n C4 H42 LMT sing 248 n n C4 H41 LMT sing 249 n n C5 C6 LMT sing 250 n n C5 H52 LMT sing 251 n n C5 H51 LMT sing 252 n n C6 C7 LMT sing 253 n n C6 H62 LMT sing 254 n n C6 H61 LMT sing 255 n n C7 C8 LMT sing 256 n n C7 H72 LMT sing 257 n n C7 H71 LMT sing 258 n n C8 C9 LMT sing 259 n n C8 H82 LMT sing 260 n n C8 H81 LMT sing 261 n n C9 C10 LMT sing 262 n n C9 H92 LMT sing 263 n n C9 H91 LMT sing 264 n n C10 C11 LMT sing 265 n n C10 H102 LMT sing 266 n n C10 H101 LMT sing 267 n n C11 C12 LMT sing 268 n n C11 H112 LMT sing 269 n n C11 H111 LMT sing 270 n n C12 H123 LMT sing 271 n n C12 H122 LMT sing 272 n n C12 H121 LMT sing 273 n n # _atom_sites.entry_id 6CNM _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 K A 1 1001 1001 K K . J 3 K A 1 1002 1002 K K . K 3 K A 1 1003 1003 K K . L 3 K A 1 1004 1004 K K . M 3 K A 1 1005 1005 K K . N 4 POV A 1 1101 1101 POV POV . O 5 LMT A 1 1103 1103 LMT LMT . P 5 LMT A 1 1104 1104 LMT LMT . Q 4 POV B 1 1101 1101 POV POV . R 5 LMT B 1 1103 1103 LMT LMT . S 5 LMT B 1 1104 1104 LMT LMT . T 4 POV C 1 1101 1101 POV POV . U 5 LMT C 1 1103 1103 LMT LMT . V 5 LMT C 1 1104 1104 LMT LMT . W 4 POV D 1 1101 1101 POV POV . X 5 LMT D 1 1103 1103 LMT LMT . Y 5 LMT D 1 1104 1104 LMT LMT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . S 5 139.108 132.973 182.204 1 48.17 ? C1B LMT 1104 B 1 HETATM 2 C C2B LMT . . . S 5 140.072 132.891 183.412 1 48.17 ? C2B LMT 1104 B 1 HETATM 3 C C3B LMT . . . S 5 140.373 131.428 183.801 1 48.17 ? C3B LMT 1104 B 1 HETATM 4 C C4B LMT . . . S 5 139.091 130.564 183.848 1 48.17 ? C4B LMT 1104 B 1 HETATM 5 C C5B LMT . . . S 5 138.392 130.738 182.503 1 48.17 ? C5B LMT 1104 B 1 HETATM 6 C C6B LMT . . . S 5 137.183 129.828 182.442 1 48.17 ? C6B LMT 1104 B 1 HETATM 7 O O1B LMT . . . S 5 139.796 132.765 181.024 1 48.17 ? O1B LMT 1104 B 1 HETATM 8 O O2B LMT . . . S 5 141.221 133.53 183.047 1 48.17 ? O2B LMT 1104 B 1 HETATM 9 O O3B LMT . . . S 5 141.077 131.367 184.973 1 48.17 ? O3B LMT 1104 B 1 HETATM 10 O O4' LMT . . . S 5 139.4 129.241 184.014 1 48.17 ? O4' LMT 1104 B 1 HETATM 11 O O5B LMT . . . S 5 138.033 132.082 182.302 1 48.17 ? O5B LMT 1104 B 1 HETATM 12 O O6B LMT . . . S 5 137.569 128.595 182.01 1 48.17 ? O6B LMT 1104 B 1 HETATM 13 C C1' LMT . . . S 5 140.674 132.982 177.37 1 48.17 ? C1' LMT 1104 B 1 HETATM 14 C C2' LMT . . . S 5 141.154 134.173 178.205 1 48.17 ? C2' LMT 1104 B 1 HETATM 15 C C3' LMT . . . S 5 140.18 134.501 179.386 1 48.17 ? C3' LMT 1104 B 1 HETATM 16 C C4' LMT . . . S 5 139.234 133.361 179.882 1 48.17 ? C4' LMT 1104 B 1 HETATM 17 C C5' LMT . . . S 5 139.1 132.275 178.797 1 48.17 ? C5' LMT 1104 B 1 HETATM 18 C C6' LMT . . . S 5 137.802 131.535 178.812 1 48.17 ? C6' LMT 1104 B 1 HETATM 19 O O1' LMT . . . S 5 140.866 133.21 176.053 1 48.17 ? O1' LMT 1104 B 1 HETATM 20 O O2' LMT . . . S 5 142.355 133.831 178.736 1 48.17 ? O2' LMT 1104 B 1 HETATM 21 O O3' LMT . . . S 5 139.431 135.589 179.071 1 48.17 ? O3' LMT 1104 B 1 HETATM 22 O O5' LMT . . . S 5 139.289 132.838 177.543 1 48.17 ? O5' LMT 1104 B 1 HETATM 23 O O6' LMT . . . S 5 137.719 130.949 177.59 1 48.17 ? O6' LMT 1104 B 1 HETATM 24 C C1 LMT . . . S 5 140.51 132.116 175.257 1 48.17 ? C1 LMT 1104 B 1 HETATM 25 C C2 LMT . . . S 5 140.245 132.703 173.914 1 48.17 ? C2 LMT 1104 B 1 HETATM 26 C C3 LMT . . . S 5 141.126 133.827 173.536 1 48.17 ? C3 LMT 1104 B 1 HETATM 27 C C4 LMT . . . S 5 140.762 134.252 172.157 1 48.17 ? C4 LMT 1104 B 1 HETATM 28 C C5 LMT . . . S 5 141.503 133.449 171.156 1 48.17 ? C5 LMT 1104 B 1 HETATM 29 C C6 LMT . . . S 5 141.606 134.178 169.867 1 48.17 ? C6 LMT 1104 B 1 HETATM 30 C C7 LMT . . . S 5 142.474 133.421 168.92 1 48.17 ? C7 LMT 1104 B 1 HETATM 31 C C8 LMT . . . S 5 142.632 134.231 167.692 1 48.17 ? C8 LMT 1104 B 1 HETATM 32 C C9 LMT . . . S 5 144.001 134.19 167.116 1 48.17 ? C9 LMT 1104 B 1 HETATM 33 C C10 LMT . . . S 5 143.922 134.812 165.756 1 48.17 ? C10 LMT 1104 B 1 HETATM 34 C C11 LMT . . . S 5 144.98 134.263 164.86 1 48.17 ? C11 LMT 1104 B 1 HETATM 35 C C12 LMT . . . S 5 144.86 134.808 163.48 1 48.17 ? C12 LMT 1104 B 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #