data_6COD # _model_server_result.job_id Tpg-sqZgz8-Qcjwj1AE5xw _model_server_result.datetime_utc '2024-11-24 17:33:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cod # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 6COD # _exptl.entry_id 6COD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6COD _cell.length_a 49.772 _cell.length_b 87.002 _cell.length_c 122.775 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6COD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6COD _atom_sites.fract_transf_matrix[1][1] 0.020092 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011494 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008145 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 301 1 GOL GOL . D 2 GOL A 1 302 4 GOL GOL . E 3 CL A 1 303 1 CL CL . F 4 HBX A 1 304 1 HBX HBX . G 3 CL B 1 301 2 CL CL . H 4 HBX B 1 302 2 HBX HBX . I 5 HOH A 1 401 202 HOH HOH . I 5 HOH A 2 402 115 HOH HOH . I 5 HOH A 3 403 290 HOH HOH . I 5 HOH A 4 404 301 HOH HOH . I 5 HOH A 5 405 98 HOH HOH . I 5 HOH A 6 406 128 HOH HOH . I 5 HOH A 7 407 183 HOH HOH . I 5 HOH A 8 408 349 HOH HOH . I 5 HOH A 9 409 317 HOH HOH . I 5 HOH A 10 410 160 HOH HOH . I 5 HOH A 11 411 166 HOH HOH . I 5 HOH A 12 412 68 HOH HOH . I 5 HOH A 13 413 334 HOH HOH . I 5 HOH A 14 414 233 HOH HOH . I 5 HOH A 15 415 109 HOH HOH . I 5 HOH A 16 416 348 HOH HOH . I 5 HOH A 17 417 287 HOH HOH . I 5 HOH A 18 418 69 HOH HOH . I 5 HOH A 19 419 258 HOH HOH . I 5 HOH A 20 420 303 HOH HOH . I 5 HOH A 21 421 180 HOH HOH . I 5 HOH A 22 422 31 HOH HOH . I 5 HOH A 23 423 36 HOH HOH . I 5 HOH A 24 424 93 HOH HOH . I 5 HOH A 25 425 97 HOH HOH . I 5 HOH A 26 426 86 HOH HOH . I 5 HOH A 27 427 57 HOH HOH . I 5 HOH A 28 428 17 HOH HOH . I 5 HOH A 29 429 45 HOH HOH . I 5 HOH A 30 430 107 HOH HOH . I 5 HOH A 31 431 65 HOH HOH . I 5 HOH A 32 432 234 HOH HOH . I 5 HOH A 33 433 155 HOH HOH . I 5 HOH A 34 434 47 HOH HOH . I 5 HOH A 35 435 146 HOH HOH . I 5 HOH A 36 436 306 HOH HOH . I 5 HOH A 37 437 316 HOH HOH . I 5 HOH A 38 438 347 HOH HOH . I 5 HOH A 39 439 6 HOH HOH . I 5 HOH A 40 440 162 HOH HOH . I 5 HOH A 41 441 327 HOH HOH . I 5 HOH A 42 442 314 HOH HOH . I 5 HOH A 43 443 124 HOH HOH . I 5 HOH A 44 444 29 HOH HOH . I 5 HOH A 45 445 91 HOH HOH . I 5 HOH A 46 446 64 HOH HOH . I 5 HOH A 47 447 44 HOH HOH . I 5 HOH A 48 448 205 HOH HOH . I 5 HOH A 49 449 338 HOH HOH . I 5 HOH A 50 450 14 HOH HOH . I 5 HOH A 51 451 85 HOH HOH . I 5 HOH A 52 452 177 HOH HOH . I 5 HOH A 53 453 92 HOH HOH . I 5 HOH A 54 454 96 HOH HOH . I 5 HOH A 55 455 134 HOH HOH . I 5 HOH A 56 456 20 HOH HOH . I 5 HOH A 57 457 323 HOH HOH . I 5 HOH A 58 458 18 HOH HOH . I 5 HOH A 59 459 318 HOH HOH . I 5 HOH A 60 460 4 HOH HOH . I 5 HOH A 61 461 71 HOH HOH . I 5 HOH A 62 462 58 HOH HOH . I 5 HOH A 63 463 114 HOH HOH . I 5 HOH A 64 464 82 HOH HOH . I 5 HOH A 65 465 75 HOH HOH . I 5 HOH A 66 466 130 HOH HOH . I 5 HOH A 67 467 345 HOH HOH . I 5 HOH A 68 468 43 HOH HOH . I 5 HOH A 69 469 21 HOH HOH . I 5 HOH A 70 470 119 HOH HOH . I 5 HOH A 71 471 319 HOH HOH . I 5 HOH A 72 472 157 HOH HOH . I 5 HOH A 73 473 94 HOH HOH . I 5 HOH A 74 474 62 HOH HOH . I 5 HOH A 75 475 312 HOH HOH . I 5 HOH A 76 476 132 HOH HOH . I 5 HOH A 77 477 72 HOH HOH . I 5 HOH A 78 478 40 HOH HOH . I 5 HOH A 79 479 210 HOH HOH . I 5 HOH A 80 480 126 HOH HOH . I 5 HOH A 81 481 32 HOH HOH . I 5 HOH A 82 482 102 HOH HOH . I 5 HOH A 83 483 120 HOH HOH . I 5 HOH A 84 484 214 HOH HOH . I 5 HOH A 85 485 256 HOH HOH . I 5 HOH A 86 486 159 HOH HOH . I 5 HOH A 87 487 172 HOH HOH . I 5 HOH A 88 488 35 HOH HOH . I 5 HOH A 89 489 311 HOH HOH . I 5 HOH A 90 490 241 HOH HOH . I 5 HOH A 91 491 198 HOH HOH . I 5 HOH A 92 492 253 HOH HOH . I 5 HOH A 93 493 113 HOH HOH . I 5 HOH A 94 494 53 HOH HOH . I 5 HOH A 95 495 245 HOH HOH . I 5 HOH A 96 496 90 HOH HOH . I 5 HOH A 97 497 165 HOH HOH . I 5 HOH A 98 498 110 HOH HOH . I 5 HOH A 99 499 291 HOH HOH . I 5 HOH A 100 500 322 HOH HOH . I 5 HOH A 101 501 23 HOH HOH . I 5 HOH A 102 502 197 HOH HOH . I 5 HOH A 103 503 321 HOH HOH . I 5 HOH A 104 504 331 HOH HOH . I 5 HOH A 105 505 344 HOH HOH . I 5 HOH A 106 506 223 HOH HOH . I 5 HOH A 107 507 200 HOH HOH . I 5 HOH A 108 508 100 HOH HOH . I 5 HOH A 109 509 7 HOH HOH . I 5 HOH A 110 510 305 HOH HOH . I 5 HOH A 111 511 76 HOH HOH . I 5 HOH A 112 512 309 HOH HOH . I 5 HOH A 113 513 127 HOH HOH . I 5 HOH A 114 514 275 HOH HOH . I 5 HOH A 115 515 141 HOH HOH . I 5 HOH A 116 516 181 HOH HOH . I 5 HOH A 117 517 103 HOH HOH . I 5 HOH A 118 518 350 HOH HOH . I 5 HOH A 119 519 104 HOH HOH . I 5 HOH A 120 520 163 HOH HOH . I 5 HOH A 121 521 227 HOH HOH . I 5 HOH A 122 522 137 HOH HOH . I 5 HOH A 123 523 315 HOH HOH . I 5 HOH A 124 524 188 HOH HOH . I 5 HOH A 125 525 310 HOH HOH . I 5 HOH A 126 526 307 HOH HOH . I 5 HOH A 127 527 302 HOH HOH . I 5 HOH A 128 528 252 HOH HOH . I 5 HOH A 129 529 164 HOH HOH . I 5 HOH A 130 530 231 HOH HOH . I 5 HOH A 131 531 273 HOH HOH . I 5 HOH A 132 532 336 HOH HOH . I 5 HOH A 133 533 174 HOH HOH . I 5 HOH A 134 534 194 HOH HOH . I 5 HOH A 135 535 329 HOH HOH . I 5 HOH A 136 536 204 HOH HOH . I 5 HOH A 137 537 230 HOH HOH . I 5 HOH A 138 538 152 HOH HOH . I 5 HOH A 139 539 212 HOH HOH . I 5 HOH A 140 540 192 HOH HOH . I 5 HOH A 141 541 346 HOH HOH . I 5 HOH A 142 542 342 HOH HOH . I 5 HOH A 143 543 54 HOH HOH . J 5 HOH B 1 401 325 HOH HOH . J 5 HOH B 2 402 326 HOH HOH . J 5 HOH B 3 403 292 HOH HOH . J 5 HOH B 4 404 125 HOH HOH . J 5 HOH B 5 405 335 HOH HOH . J 5 HOH B 6 406 237 HOH HOH . J 5 HOH B 7 407 328 HOH HOH . J 5 HOH B 8 408 296 HOH HOH . J 5 HOH B 9 409 295 HOH HOH . J 5 HOH B 10 410 133 HOH HOH . J 5 HOH B 11 411 304 HOH HOH . J 5 HOH B 12 412 260 HOH HOH . J 5 HOH B 13 413 289 HOH HOH . J 5 HOH B 14 414 278 HOH HOH . J 5 HOH B 15 415 84 HOH HOH . J 5 HOH B 16 416 73 HOH HOH . J 5 HOH B 17 417 209 HOH HOH . J 5 HOH B 18 418 255 HOH HOH . J 5 HOH B 19 419 111 HOH HOH . J 5 HOH B 20 420 262 HOH HOH . J 5 HOH B 21 421 19 HOH HOH . J 5 HOH B 22 422 337 HOH HOH . J 5 HOH B 23 423 52 HOH HOH . J 5 HOH B 24 424 324 HOH HOH . J 5 HOH B 25 425 13 HOH HOH . J 5 HOH B 26 426 12 HOH HOH . J 5 HOH B 27 427 150 HOH HOH . J 5 HOH B 28 428 46 HOH HOH . J 5 HOH B 29 429 105 HOH HOH . J 5 HOH B 30 430 41 HOH HOH . J 5 HOH B 31 431 9 HOH HOH . J 5 HOH B 32 432 208 HOH HOH . J 5 HOH B 33 433 42 HOH HOH . J 5 HOH B 34 434 148 HOH HOH . J 5 HOH B 35 435 49 HOH HOH . J 5 HOH B 36 436 117 HOH HOH . J 5 HOH B 37 437 2 HOH HOH . J 5 HOH B 38 438 224 HOH HOH . J 5 HOH B 39 439 39 HOH HOH . J 5 HOH B 40 440 89 HOH HOH . J 5 HOH B 41 441 1 HOH HOH . J 5 HOH B 42 442 34 HOH HOH . J 5 HOH B 43 443 66 HOH HOH . J 5 HOH B 44 444 11 HOH HOH . J 5 HOH B 45 445 147 HOH HOH . J 5 HOH B 46 446 60 HOH HOH . J 5 HOH B 47 447 242 HOH HOH . J 5 HOH B 48 448 15 HOH HOH . J 5 HOH B 49 449 81 HOH HOH . J 5 HOH B 50 450 25 HOH HOH . J 5 HOH B 51 451 139 HOH HOH . J 5 HOH B 52 452 116 HOH HOH . J 5 HOH B 53 453 298 HOH HOH . J 5 HOH B 54 454 269 HOH HOH . J 5 HOH B 55 455 26 HOH HOH . J 5 HOH B 56 456 51 HOH HOH . J 5 HOH B 57 457 22 HOH HOH . J 5 HOH B 58 458 288 HOH HOH . J 5 HOH B 59 459 229 HOH HOH . J 5 HOH B 60 460 294 HOH HOH . J 5 HOH B 61 461 138 HOH HOH . J 5 HOH B 62 462 55 HOH HOH . J 5 HOH B 63 463 158 HOH HOH . J 5 HOH B 64 464 151 HOH HOH . J 5 HOH B 65 465 5 HOH HOH . J 5 HOH B 66 466 79 HOH HOH . J 5 HOH B 67 467 182 HOH HOH . J 5 HOH B 68 468 77 HOH HOH . J 5 HOH B 69 469 38 HOH HOH . J 5 HOH B 70 470 140 HOH HOH . J 5 HOH B 71 471 16 HOH HOH . J 5 HOH B 72 472 112 HOH HOH . J 5 HOH B 73 473 67 HOH HOH . J 5 HOH B 74 474 330 HOH HOH . J 5 HOH B 75 475 156 HOH HOH . J 5 HOH B 76 476 313 HOH HOH . J 5 HOH B 77 477 179 HOH HOH . J 5 HOH B 78 478 215 HOH HOH . J 5 HOH B 79 479 70 HOH HOH . J 5 HOH B 80 480 30 HOH HOH . J 5 HOH B 81 481 59 HOH HOH . J 5 HOH B 82 482 144 HOH HOH . J 5 HOH B 83 483 74 HOH HOH . J 5 HOH B 84 484 199 HOH HOH . J 5 HOH B 85 485 216 HOH HOH . J 5 HOH B 86 486 56 HOH HOH . J 5 HOH B 87 487 351 HOH HOH . J 5 HOH B 88 488 135 HOH HOH . J 5 HOH B 89 489 63 HOH HOH . J 5 HOH B 90 490 48 HOH HOH . J 5 HOH B 91 491 33 HOH HOH . J 5 HOH B 92 492 175 HOH HOH . J 5 HOH B 93 493 10 HOH HOH . J 5 HOH B 94 494 50 HOH HOH . J 5 HOH B 95 495 299 HOH HOH . J 5 HOH B 96 496 78 HOH HOH . J 5 HOH B 97 497 24 HOH HOH . J 5 HOH B 98 498 332 HOH HOH . J 5 HOH B 99 499 88 HOH HOH . J 5 HOH B 100 500 123 HOH HOH . J 5 HOH B 101 501 8 HOH HOH . J 5 HOH B 102 502 83 HOH HOH . J 5 HOH B 103 503 142 HOH HOH . J 5 HOH B 104 504 169 HOH HOH . J 5 HOH B 105 505 240 HOH HOH . J 5 HOH B 106 506 37 HOH HOH . J 5 HOH B 107 507 143 HOH HOH . J 5 HOH B 108 508 267 HOH HOH . J 5 HOH B 109 509 297 HOH HOH . J 5 HOH B 110 510 80 HOH HOH . J 5 HOH B 111 511 333 HOH HOH . J 5 HOH B 112 512 320 HOH HOH . J 5 HOH B 113 513 121 HOH HOH . J 5 HOH B 114 514 161 HOH HOH . J 5 HOH B 115 515 178 HOH HOH . J 5 HOH B 116 516 187 HOH HOH . J 5 HOH B 117 517 251 HOH HOH . J 5 HOH B 118 518 3 HOH HOH . J 5 HOH B 119 519 95 HOH HOH . J 5 HOH B 120 520 293 HOH HOH . J 5 HOH B 121 521 244 HOH HOH . J 5 HOH B 122 522 184 HOH HOH . J 5 HOH B 123 523 235 HOH HOH . J 5 HOH B 124 524 185 HOH HOH . J 5 HOH B 125 525 153 HOH HOH . J 5 HOH B 126 526 218 HOH HOH . J 5 HOH B 127 527 196 HOH HOH . J 5 HOH B 128 528 341 HOH HOH . J 5 HOH B 129 529 149 HOH HOH . J 5 HOH B 130 530 340 HOH HOH . J 5 HOH B 131 531 154 HOH HOH . J 5 HOH B 132 532 283 HOH HOH . J 5 HOH B 133 533 339 HOH HOH . J 5 HOH B 134 534 281 HOH HOH . J 5 HOH B 135 535 282 HOH HOH . J 5 HOH B 136 536 145 HOH HOH . J 5 HOH B 137 537 136 HOH HOH . J 5 HOH B 138 538 108 HOH HOH . J 5 HOH B 139 539 343 HOH HOH . J 5 HOH B 140 540 87 HOH HOH . J 5 HOH B 141 541 232 HOH HOH . J 5 HOH B 142 542 271 HOH HOH . J 5 HOH B 143 543 272 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 2 14.253 0.385 0.805 1 52.72 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . D 2 15.669 0.143 0.563 1 62.51 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . D 2 13.753 1.831 0.702 1 50.49 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . D 2 14.739 2.825 1.097 1 54.84 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . D 2 13.204 2.101 -0.714 1 50.83 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . D 2 11.982 1.348 -0.899 1 38.37 ? O3 GOL 302 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #