data_6COX
#
_model_server_result.job_id            zAMZ-0dhmbA_T46Ov3AKtQ 
_model_server_result.datetime_utc      '2024-11-14 09:06:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6cox 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":682}' 
#
_entry.id    6COX 
#
_exptl.entry_id    6COX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6COX 
_cell.length_a            181.17 
_cell.length_b            132.81 
_cell.length_c            122.74 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6COX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 36 1_555 A SG CYS 15 A CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 A SG CYS 5 A CYS 37 1_555 A SG CYS 128 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf3 A SG CYS 9 A CYS 41 1_555 A SG CYS 25 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf4 A SG CYS 27 A CYS 59 1_555 A SG CYS 37 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf5 A SG CYS 538 A CYS 569 1_555 A SG CYS 544 A CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf6 B SG CYS 4 B CYS 36 1_555 B SG CYS 15 B CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf7 B SG CYS 5 B CYS 37 1_555 B SG CYS 128 B CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf8 B SG CYS 9 B CYS 41 1_555 B SG CYS 25 B CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf9 B SG CYS 27 B CYS 59 1_555 B SG CYS 37 B CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf10 B SG CYS 538 B CYS 569 1_555 B SG CYS 544 B CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
covale ? covale1 A ND2 ASN 36 A ASN 68 1_555 C C1 NAG . A NAG 661 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale2 A ND2 ASN 113 A ASN 144 1_555 D C1 NAG . A NAG 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale3 A ND2 ASN 379 A ASN 410 1_555 E C1 NAG . A NAG 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale4 B ND2 ASN 36 B ASN 68 1_555 H C1 NAG . B NAG 661 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale5 B ND2 ASN 113 B ASN 144 1_555 I C1 NAG . B NAG 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale6 B ND2 ASN 379 B ASN 410 1_555 J C1 NAG . B NAG 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? 
metalc ? metalc1 A NE2 HIS 357 A HIS 388 1_555 F FE HEM . A HEM 682 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc2 B NE2 HIS 357 B HIS 388 1_555 K FE HEM . B HEM 682 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     6COX 
_atom_sites.fract_transf_matrix[1][1]    0.00552 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00753 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008147 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 661 661 NAG NAG . 
D 2 NAG A 1 671 671 NAG NAG . 
E 2 NAG A 1 681 681 NAG NAG . 
F 3 HEM A 1 682 601 HEM HEM . 
G 4 S58 A 1 701 701 S58 S58 . 
H 2 NAG B 1 661 661 NAG NAG . 
I 2 NAG B 1 671 671 NAG NAG . 
J 2 NAG B 1 681 681 NAG NAG . 
K 3 HEM B 1 682 601 HEM HEM . 
L 4 S58 B 1 701 701 S58 S58 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . K 3 71.221 30.045 27.615 1 29.5 ? CHA HEM 682 B 1 
HETATM 2 C CHB HEM . . . K 3 74.401 29.597 24.081 1 24.54 ? CHB HEM 682 B 1 
HETATM 3 C CHC HEM . . . K 3 74.831 24.934 25.089 1 13.99 ? CHC HEM 682 B 1 
HETATM 4 C CHD HEM . . . K 3 72.094 25.547 28.986 1 20.39 ? CHD HEM 682 B 1 
HETATM 5 C C1A HEM . . . K 3 72.047 30.333 26.571 1 30.33 ? C1A HEM 682 B 1 
HETATM 6 C C2A HEM . . . K 3 72.127 31.632 25.94 1 34.35 ? C2A HEM 682 B 1 
HETATM 7 C C3A HEM . . . K 3 73.052 31.508 24.965 1 34.07 ? C3A HEM 682 B 1 
HETATM 8 C C4A HEM . . . K 3 73.517 30.135 24.991 1 30.58 ? C4A HEM 682 B 1 
HETATM 9 C CMA HEM . . . K 3 73.502 32.597 24.005 1 36.53 ? CMA HEM 682 B 1 
HETATM 10 C CAA HEM . . . K 3 71.318 32.883 26.283 1 38.21 ? CAA HEM 682 B 1 
HETATM 11 C CBA HEM . . . K 3 72.154 33.98 26.955 1 47.47 ? CBA HEM 682 B 1 
HETATM 12 C CGA HEM . . . K 3 71.568 34.463 28.291 1 52.25 ? CGA HEM 682 B 1 
HETATM 13 O O1A HEM . . . K 3 71.645 33.716 29.297 1 53.58 ? O1A HEM 682 B 1 
HETATM 14 O O2A HEM . . . K 3 71.037 35.6 28.341 1 55.44 ? O2A HEM 682 B 1 
HETATM 15 C C1B HEM . . . K 3 74.796 28.281 24.046 1 24.25 ? C1B HEM 682 B 1 
HETATM 16 C C2B HEM . . . K 3 75.623 27.713 23.002 1 23.78 ? C2B HEM 682 B 1 
HETATM 17 C C3B HEM . . . K 3 75.655 26.388 23.222 1 18.96 ? C3B HEM 682 B 1 
HETATM 18 C C4B HEM . . . K 3 74.91 26.146 24.446 1 16.8 ? C4B HEM 682 B 1 
HETATM 19 C CMB HEM . . . K 3 76.413 28.461 21.931 1 27.15 ? CMB HEM 682 B 1 
HETATM 20 C CAB HEM . . . K 3 76.241 25.471 22.381 1 17.83 ? CAB HEM 682 B 1 
HETATM 21 C CBB HEM . . . K 3 75.442 24.473 21.711 1 19.45 ? CBB HEM 682 B 1 
HETATM 22 C C1C HEM . . . K 3 74.193 24.713 26.29 1 17.03 ? C1C HEM 682 B 1 
HETATM 23 C C2C HEM . . . K 3 74.124 23.431 26.966 1 13.57 ? C2C HEM 682 B 1 
HETATM 24 C C3C HEM . . . K 3 73.414 23.619 28.098 1 17.62 ? C3C HEM 682 B 1 
HETATM 25 C C4C HEM . . . K 3 73.001 25.01 28.097 1 20.2 ? C4C HEM 682 B 1 
HETATM 26 C CMC HEM . . . K 3 74.662 22.103 26.482 1 2.8 ? CMC HEM 682 B 1 
HETATM 27 C CAC HEM . . . K 3 73.216 22.676 29.092 1 16.42 ? CAC HEM 682 B 1 
HETATM 28 C CBC HEM . . . K 3 71.914 22.302 29.559 1 17.51 ? CBC HEM 682 B 1 
HETATM 29 C C1D HEM . . . K 3 71.578 26.819 28.921 1 21.3 ? C1D HEM 682 B 1 
HETATM 30 C C2D HEM . . . K 3 70.515 27.324 29.782 1 21.66 ? C2D HEM 682 B 1 
HETATM 31 C C3D HEM . . . K 3 70.237 28.561 29.354 1 25.72 ? C3D HEM 682 B 1 
HETATM 32 C C4D HEM . . . K 3 71.156 28.839 28.267 1 28.54 ? C4D HEM 682 B 1 
HETATM 33 C CMD HEM . . . K 3 69.818 26.639 30.936 1 16.6 ? CMD HEM 682 B 1 
HETATM 34 C CAD HEM . . . K 3 69.069 29.428 29.787 1 30.95 ? CAD HEM 682 B 1 
HETATM 35 C CBD HEM . . . K 3 67.786 29.197 28.956 1 32.9 ? CBD HEM 682 B 1 
HETATM 36 C CGD HEM . . . K 3 66.857 30.418 28.95 1 36.13 ? CGD HEM 682 B 1 
HETATM 37 O O1D HEM . . . K 3 66.781 31.159 29.962 1 35.7 ? O1D HEM 682 B 1 
HETATM 38 O O2D HEM . . . K 3 66.217 30.658 27.913 1 33.87 ? O2D HEM 682 B 1 
HETATM 39 N NA HEM . . . K 3 72.904 29.426 25.997 1 27.13 ? NA HEM 682 B 1 
HETATM 40 N NB HEM . . . K 3 74.37 27.318 24.936 1 21.95 ? NB HEM 682 B 1 
HETATM 41 N NC HEM . . . K 3 73.504 25.685 26.996 1 23.18 ? NC HEM 682 B 1 
HETATM 42 N ND HEM . . . K 3 71.956 27.758 27.984 1 22.61 ? ND HEM 682 B 1 
HETATM 43 FE FE HEM . . . K 3 73.22 27.573 26.509 1 26.79 ? FE HEM 682 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#