data_6CP8
#
_model_server_result.job_id            pde8kNBcbEpmMi2Nxx9UiA 
_model_server_result.datetime_utc      '2025-03-13 18:05:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6cp8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":402}' 
#
_entry.id    6CP8 
#
_exptl.entry_id    6CP8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.01 
_cell.angle_gamma         90 
_cell.entry_id            6CP8 
_cell.length_a            50.707 
_cell.length_b            106.534 
_cell.length_c            72.654 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6CP8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,H,J 1 1 
B,D,G,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C TYR 35 A TYR 208 1_555 A N MSE 36 A MSE 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C MSE 36 A MSE 209 1_555 A N ARG 37 A ARG 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale3 A C ARG 74 A ARG 247 1_555 A N MSE 75 A MSE 248 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 A C ARG 74 A ARG 247 1_555 A N MSE 75 A MSE 248 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 A C MSE 75 A MSE 248 1_555 A N GLU 76 A GLU 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 A C ASP 90 A ASP 263 1_555 A N MSE 91 A MSE 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale7 A C MSE 91 A MSE 264 1_555 A N ALA 92 A ALA 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale8 A C SER 108 A SER 281 1_555 A N MSE 109 A MSE 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale9 A C MSE 109 A MSE 282 1_555 A N ILE 110 A ILE 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale10 A C ILE 110 A ILE 283 1_555 A N MSE 111 A MSE 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale11 A C MSE 111 A MSE 284 1_555 A N ASP 112 A ASP 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale12 B C TYR 35 B TYR 208 1_555 B N MSE 36 B MSE 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale13 B C MSE 36 B MSE 209 1_555 B N ARG 37 B ARG 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale14 B C ARG 74 B ARG 247 1_555 B N MSE 75 B MSE 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale15 B C MSE 75 B MSE 248 1_555 B N GLU 76 B GLU 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale16 B C ASP 90 B ASP 263 1_555 B N MSE 91 B MSE 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale17 B C MSE 91 B MSE 264 1_555 B N ALA 92 B ALA 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale18 B C SER 108 B SER 281 1_555 B N MSE 109 B MSE 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale19 B C MSE 109 B MSE 282 1_555 B N ILE 110 B ILE 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale20 B C ILE 110 B ILE 283 1_555 B N MSE 111 B MSE 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale21 B C MSE 111 B MSE 284 1_555 B N ASP 112 B ASP 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale22 C C LEU 131 C LEU 128 1_555 C N MSE 132 C MSE 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale23 C C MSE 132 C MSE 129 1_555 C N LYS 133 C LYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale24 D C LEU 131 D LEU 128 1_555 D N MSE 132 D MSE 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale25 D C MSE 132 D MSE 129 1_555 D N LYS 133 D LYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 162 n n 
C1 C2 GOL sing 163 n n 
C1 H11 GOL sing 164 n n 
C1 H12 GOL sing 165 n n 
O1 HO1 GOL sing 166 n n 
C2 O2 GOL sing 167 n n 
C2 C3 GOL sing 168 n n 
C2 H2 GOL sing 169 n n 
O2 HO2 GOL sing 170 n n 
C3 O3 GOL sing 171 n n 
C3 H31 GOL sing 172 n n 
C3 H32 GOL sing 173 n n 
O3 HO3 GOL sing 174 n n 
#
_atom_sites.entry_id                     6CP8 
_atom_sites.fract_transf_matrix[1][1]    0.019721 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003837 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009387 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014022 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 EPE A 1 401 1 EPE EPE . 
F 4 GOL A 1 402 1 GOL GOL . 
G 4 GOL D 1 201 2 GOL GOL . 
H 5 HOH A 1 501 161 HOH HOH . 
H 5 HOH A 2 502 34 HOH HOH . 
H 5 HOH A 3 503 37 HOH HOH . 
H 5 HOH A 4 504 165 HOH HOH . 
H 5 HOH A 5 505 21 HOH HOH . 
H 5 HOH A 6 506 36 HOH HOH . 
H 5 HOH A 7 507 128 HOH HOH . 
H 5 HOH A 8 508 116 HOH HOH . 
H 5 HOH A 9 509 40 HOH HOH . 
H 5 HOH A 10 510 29 HOH HOH . 
H 5 HOH A 11 511 26 HOH HOH . 
H 5 HOH A 12 512 178 HOH HOH . 
H 5 HOH A 13 513 155 HOH HOH . 
H 5 HOH A 14 514 33 HOH HOH . 
H 5 HOH A 15 515 111 HOH HOH . 
H 5 HOH A 16 516 113 HOH HOH . 
H 5 HOH A 17 517 67 HOH HOH . 
H 5 HOH A 18 518 51 HOH HOH . 
H 5 HOH A 19 519 63 HOH HOH . 
H 5 HOH A 20 520 14 HOH HOH . 
H 5 HOH A 21 521 70 HOH HOH . 
H 5 HOH A 22 522 55 HOH HOH . 
H 5 HOH A 23 523 156 HOH HOH . 
H 5 HOH A 24 524 96 HOH HOH . 
H 5 HOH A 25 525 137 HOH HOH . 
H 5 HOH A 26 526 136 HOH HOH . 
H 5 HOH A 27 527 135 HOH HOH . 
H 5 HOH A 28 528 66 HOH HOH . 
H 5 HOH A 29 529 43 HOH HOH . 
H 5 HOH A 30 530 2 HOH HOH . 
H 5 HOH A 31 531 94 HOH HOH . 
H 5 HOH A 32 532 4 HOH HOH . 
H 5 HOH A 33 533 93 HOH HOH . 
H 5 HOH A 34 534 118 HOH HOH . 
H 5 HOH A 35 535 110 HOH HOH . 
H 5 HOH A 36 536 130 HOH HOH . 
H 5 HOH A 37 537 140 HOH HOH . 
H 5 HOH A 38 538 57 HOH HOH . 
H 5 HOH A 39 539 179 HOH HOH . 
H 5 HOH A 40 540 129 HOH HOH . 
H 5 HOH A 41 541 109 HOH HOH . 
H 5 HOH A 42 542 71 HOH HOH . 
H 5 HOH A 43 543 112 HOH HOH . 
H 5 HOH A 44 544 157 HOH HOH . 
H 5 HOH A 45 545 120 HOH HOH . 
H 5 HOH A 46 546 30 HOH HOH . 
H 5 HOH A 47 547 119 HOH HOH . 
I 5 HOH B 1 401 144 HOH HOH . 
I 5 HOH B 2 402 142 HOH HOH . 
I 5 HOH B 3 403 76 HOH HOH . 
I 5 HOH B 4 404 106 HOH HOH . 
I 5 HOH B 5 405 35 HOH HOH . 
I 5 HOH B 6 406 159 HOH HOH . 
I 5 HOH B 7 407 80 HOH HOH . 
I 5 HOH B 8 408 77 HOH HOH . 
I 5 HOH B 9 409 81 HOH HOH . 
I 5 HOH B 10 410 74 HOH HOH . 
I 5 HOH B 11 411 78 HOH HOH . 
I 5 HOH B 12 412 11 HOH HOH . 
I 5 HOH B 13 413 149 HOH HOH . 
I 5 HOH B 14 414 124 HOH HOH . 
I 5 HOH B 15 415 127 HOH HOH . 
I 5 HOH B 16 416 53 HOH HOH . 
I 5 HOH B 17 417 61 HOH HOH . 
I 5 HOH B 18 418 139 HOH HOH . 
I 5 HOH B 19 419 75 HOH HOH . 
I 5 HOH B 20 420 141 HOH HOH . 
J 5 HOH C 1 201 73 HOH HOH . 
J 5 HOH C 2 202 87 HOH HOH . 
J 5 HOH C 3 203 16 HOH HOH . 
J 5 HOH C 4 204 25 HOH HOH . 
J 5 HOH C 5 205 91 HOH HOH . 
J 5 HOH C 6 206 28 HOH HOH . 
J 5 HOH C 7 207 160 HOH HOH . 
J 5 HOH C 8 208 138 HOH HOH . 
J 5 HOH C 9 209 95 HOH HOH . 
J 5 HOH C 10 210 49 HOH HOH . 
J 5 HOH C 11 211 131 HOH HOH . 
J 5 HOH C 12 212 12 HOH HOH . 
J 5 HOH C 13 213 8 HOH HOH . 
J 5 HOH C 14 214 27 HOH HOH . 
J 5 HOH C 15 215 46 HOH HOH . 
J 5 HOH C 16 216 164 HOH HOH . 
J 5 HOH C 17 217 134 HOH HOH . 
J 5 HOH C 18 218 162 HOH HOH . 
J 5 HOH C 19 219 132 HOH HOH . 
J 5 HOH C 20 220 18 HOH HOH . 
J 5 HOH C 21 221 92 HOH HOH . 
J 5 HOH C 22 222 19 HOH HOH . 
J 5 HOH C 23 223 15 HOH HOH . 
J 5 HOH C 24 224 151 HOH HOH . 
J 5 HOH C 25 225 84 HOH HOH . 
J 5 HOH C 26 226 133 HOH HOH . 
J 5 HOH C 27 227 90 HOH HOH . 
J 5 HOH C 28 228 42 HOH HOH . 
J 5 HOH C 29 229 68 HOH HOH . 
J 5 HOH C 30 230 9 HOH HOH . 
J 5 HOH C 31 231 163 HOH HOH . 
J 5 HOH C 32 232 60 HOH HOH . 
J 5 HOH C 33 233 114 HOH HOH . 
J 5 HOH C 34 234 83 HOH HOH . 
J 5 HOH C 35 235 150 HOH HOH . 
J 5 HOH C 36 236 22 HOH HOH . 
J 5 HOH C 37 237 56 HOH HOH . 
J 5 HOH C 38 238 145 HOH HOH . 
J 5 HOH C 39 239 98 HOH HOH . 
J 5 HOH C 40 240 58 HOH HOH . 
J 5 HOH C 41 241 32 HOH HOH . 
J 5 HOH C 42 242 97 HOH HOH . 
J 5 HOH C 43 243 31 HOH HOH . 
J 5 HOH C 44 244 3 HOH HOH . 
J 5 HOH C 45 245 154 HOH HOH . 
J 5 HOH C 46 246 153 HOH HOH . 
J 5 HOH C 47 247 158 HOH HOH . 
J 5 HOH C 48 248 89 HOH HOH . 
J 5 HOH C 49 249 48 HOH HOH . 
J 5 HOH C 50 250 17 HOH HOH . 
J 5 HOH C 51 251 88 HOH HOH . 
J 5 HOH C 52 252 20 HOH HOH . 
J 5 HOH C 53 253 123 HOH HOH . 
J 5 HOH C 54 254 99 HOH HOH . 
J 5 HOH C 55 255 7 HOH HOH . 
J 5 HOH C 56 256 117 HOH HOH . 
J 5 HOH C 57 257 152 HOH HOH . 
J 5 HOH C 58 258 82 HOH HOH . 
J 5 HOH C 59 259 54 HOH HOH . 
J 5 HOH C 60 260 176 HOH HOH . 
J 5 HOH C 61 261 177 HOH HOH . 
J 5 HOH C 62 262 85 HOH HOH . 
K 5 HOH D 1 301 166 HOH HOH . 
K 5 HOH D 2 302 143 HOH HOH . 
K 5 HOH D 3 303 172 HOH HOH . 
K 5 HOH D 4 304 101 HOH HOH . 
K 5 HOH D 5 305 171 HOH HOH . 
K 5 HOH D 6 306 72 HOH HOH . 
K 5 HOH D 7 307 69 HOH HOH . 
K 5 HOH D 8 308 5 HOH HOH . 
K 5 HOH D 9 309 146 HOH HOH . 
K 5 HOH D 10 310 103 HOH HOH . 
K 5 HOH D 11 311 52 HOH HOH . 
K 5 HOH D 12 312 44 HOH HOH . 
K 5 HOH D 13 313 47 HOH HOH . 
K 5 HOH D 14 314 174 HOH HOH . 
K 5 HOH D 15 315 41 HOH HOH . 
K 5 HOH D 16 316 24 HOH HOH . 
K 5 HOH D 17 317 104 HOH HOH . 
K 5 HOH D 18 318 169 HOH HOH . 
K 5 HOH D 19 319 86 HOH HOH . 
K 5 HOH D 20 320 125 HOH HOH . 
K 5 HOH D 21 321 38 HOH HOH . 
K 5 HOH D 22 322 59 HOH HOH . 
K 5 HOH D 23 323 100 HOH HOH . 
K 5 HOH D 24 324 23 HOH HOH . 
K 5 HOH D 25 325 45 HOH HOH . 
K 5 HOH D 26 326 148 HOH HOH . 
K 5 HOH D 27 327 147 HOH HOH . 
K 5 HOH D 28 328 173 HOH HOH . 
K 5 HOH D 29 329 102 HOH HOH . 
K 5 HOH D 30 330 10 HOH HOH . 
K 5 HOH D 31 331 115 HOH HOH . 
K 5 HOH D 32 332 167 HOH HOH . 
K 5 HOH D 33 333 107 HOH HOH . 
K 5 HOH D 34 334 170 HOH HOH . 
K 5 HOH D 35 335 168 HOH HOH . 
K 5 HOH D 36 336 1 HOH HOH . 
K 5 HOH D 37 337 108 HOH HOH . 
K 5 HOH D 38 338 175 HOH HOH . 
K 5 HOH D 39 339 13 HOH HOH . 
K 5 HOH D 40 340 39 HOH HOH . 
K 5 HOH D 41 341 122 HOH HOH . 
K 5 HOH D 42 342 79 HOH HOH . 
K 5 HOH D 43 343 121 HOH HOH . 
K 5 HOH D 44 344 50 HOH HOH . 
K 5 HOH D 45 345 126 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 4 -36.488 1.792 60.527 1 46.3 ? C1 GOL 402 A 1 
HETATM 2 O O1 GOL . . . F 4 -36.306 1.284 59.227 1 47.62 ? O1 GOL 402 A 1 
HETATM 3 C C2 GOL . . . F 4 -36.873 0.688 61.496 1 46.52 ? C2 GOL 402 A 1 
HETATM 4 O O2 GOL . . . F 4 -35.722 0.285 62.215 1 47.35 ? O2 GOL 402 A 1 
HETATM 5 C C3 GOL . . . F 4 -37.908 1.251 62.457 1 46.04 ? C3 GOL 402 A 1 
HETATM 6 O O3 GOL . . . F 4 -37.534 0.918 63.774 1 46.98 ? O3 GOL 402 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           6 
#