data_6CPG # _model_server_result.job_id H-4hrXQyRHyRoqWPrhhpRw _model_server_result.datetime_utc '2024-10-10 05:20:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cpg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 6CPG # _exptl.entry_id 6CPG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 381.432 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-cyclopropyl-3-{3-[5-(morpholin-4-ylmethyl)-1H-benzimidazol-2-yl]-1H-pyrazol-4-yl}urea _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CPG _cell.length_a 63.86 _cell.length_b 69.7 _cell.length_c 175.56 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CPG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C19 H23 N7 O2' _chem_comp.formula_weight 381.432 _chem_comp.id 35R _chem_comp.mon_nstd_flag . _chem_comp.name 1-cyclopropyl-3-{3-[5-(morpholin-4-ylmethyl)-1H-benzimidazol-2-yl]-1H-pyrazol-4-yl}urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C18 35R doub 1 n y C17 C16 35R sing 2 n y C18 C19 35R sing 3 n y C27 C26 35R sing 4 n n C27 N21 35R sing 5 n n C26 O25 35R sing 6 n n C16 N15 35R sing 7 n y C16 C29 35R doub 8 n y C19 C20 35R sing 9 n n C19 C28 35R doub 10 n y C20 N21 35R sing 11 n n N21 C23 35R sing 12 n n N15 C14 35R sing 13 n y C29 C28 35R sing 14 n y C29 N30 35R sing 15 n y O25 C24 35R sing 16 n n C14 N30 35R doub 17 n y C14 C13 35R sing 18 n n N12 C13 35R doub 19 n y N12 N10 35R sing 20 n y C23 C24 35R sing 21 n n C13 C8 35R sing 22 n y N10 C9 35R sing 23 n y C8 C9 35R doub 24 n y C8 N7 35R sing 25 n n N7 C2 35R sing 26 n n C5 C4 35R sing 27 n n C5 C6 35R sing 28 n n C4 N3 35R sing 29 n n C4 C6 35R sing 30 n n C2 O1 35R doub 31 n n C2 N3 35R sing 32 n n N3 H1 35R sing 33 n n C4 H2 35R sing 34 n n C5 H3 35R sing 35 n n C5 H4 35R sing 36 n n C6 H5 35R sing 37 n n C6 H6 35R sing 38 n n N7 H7 35R sing 39 n n C9 H8 35R sing 40 n n N10 H9 35R sing 41 n n N15 H10 35R sing 42 n n C17 H11 35R sing 43 n n C18 H12 35R sing 44 n n C20 H13 35R sing 45 n n C20 H14 35R sing 46 n n C23 H16 35R sing 47 n n C23 H17 35R sing 48 n n C24 H18 35R sing 49 n n C24 H19 35R sing 50 n n C26 H20 35R sing 51 n n C26 H21 35R sing 52 n n C27 H22 35R sing 53 n n C27 H23 35R sing 54 n n C28 H24 35R sing 55 n n # _atom_sites.entry_id 6CPG _atom_sites.fract_transf_matrix[1][1] 0.015659 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014347 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005696 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 35R A 1 501 1 35R 35R . F 3 35R D 1 501 1 35R 35R . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 35R . . . E 3 7.224 -9.204 60.055 1 78.3 ? O1 35R 501 A 1 HETATM 2 C C2 35R . . . E 3 7.792 -9.974 59.357 1 78.32 ? C2 35R 501 A 1 HETATM 3 N N3 35R . . . E 3 9.074 -9.634 58.727 1 81.22 ? N3 35R 501 A 1 HETATM 4 C C4 35R . . . E 3 9.732 -10.637 57.864 1 80.99 ? C4 35R 501 A 1 HETATM 5 C C5 35R . . . E 3 10.202 -10.144 56.492 1 80.77 ? C5 35R 501 A 1 HETATM 6 C C6 35R . . . E 3 8.955 -11.023 56.6 1 77.9 ? C6 35R 501 A 1 HETATM 7 N N7 35R . . . E 3 7.25 -11.307 59.091 1 77.16 ? N7 35R 501 A 1 HETATM 8 C C8 35R . . . E 3 5.981 -11.811 59.608 1 75.23 ? C8 35R 501 A 1 HETATM 9 C C9 35R . . . E 3 5.293 -11.546 60.757 1 73.7 ? C9 35R 501 A 1 HETATM 10 N N10 35R . . . E 3 4.182 -12.286 60.723 1 73.06 ? N10 35R 501 A 1 HETATM 11 N N12 35R . . . E 3 4.172 -13.025 59.539 1 74.14 ? N12 35R 501 A 1 HETATM 12 C C13 35R . . . E 3 5.282 -12.715 58.875 1 75.45 ? C13 35R 501 A 1 HETATM 13 C C14 35R . . . E 3 5.893 -13.158 57.524 1 77.35 ? C14 35R 501 A 1 HETATM 14 N N15 35R . . . E 3 4.85 -13.948 57.167 1 77.5 ? N15 35R 501 A 1 HETATM 15 C C16 35R . . . E 3 5.155 -14.475 55.966 1 78 ? C16 35R 501 A 1 HETATM 16 C C17 35R . . . E 3 4.469 -15.362 55.104 1 79.31 ? C17 35R 501 A 1 HETATM 17 C C18 35R . . . E 3 5.04 -15.742 53.896 1 82.29 ? C18 35R 501 A 1 HETATM 18 C C19 35R . . . E 3 6.29 -15.255 53.54 1 83.87 ? C19 35R 501 A 1 HETATM 19 C C20 35R . . . E 3 6.642 -15.858 52.154 1 91.9 ? C20 35R 501 A 1 HETATM 20 N N21 35R . . . E 3 8.04 -16.343 51.942 1 94.87 ? N21 35R 501 A 1 HETATM 21 C C23 35R . . . E 3 8.012 -17.445 51.032 1 93.69 ? C23 35R 501 A 1 HETATM 22 C C24 35R . . . E 3 7.539 -18.733 51.726 1 93.75 ? C24 35R 501 A 1 HETATM 23 O O25 35R . . . E 3 8.168 -18.961 52.993 1 91.06 ? O25 35R 501 A 1 HETATM 24 C C26 35R . . . E 3 9.263 -18.08 53.262 1 88.8 ? C26 35R 501 A 1 HETATM 25 C C27 35R . . . E 3 8.912 -16.597 53.066 1 90.2 ? C27 35R 501 A 1 HETATM 26 C C28 35R . . . E 3 6.966 -14.38 54.372 1 80.55 ? C28 35R 501 A 1 HETATM 27 C C29 35R . . . E 3 6.378 -14.007 55.595 1 79.41 ? C29 35R 501 A 1 HETATM 28 N N30 35R . . . E 3 6.817 -13.205 56.554 1 77.52 ? N30 35R 501 A 1 HETATM 29 H H1 35R . . . E 3 9.435 -8.864 58.858 1 97.55 ? H1 35R 501 A 1 HETATM 30 H H2 35R . . . E 3 10.278 -11.336 58.259 1 97.27 ? H2 35R 501 A 1 HETATM 31 H H3 35R . . . E 3 10.039 -9.207 56.305 1 97.02 ? H3 35R 501 A 1 HETATM 32 H H4 35R . . . E 3 10.993 -10.582 56.138 1 97.02 ? H4 35R 501 A 1 HETATM 33 H H5 35R . . . E 3 8.109 -10.566 56.473 1 93.57 ? H5 35R 501 A 1 HETATM 34 H H6 35R . . . E 3 9.063 -11.941 56.306 1 93.57 ? H6 35R 501 A 1 HETATM 35 H H7 35R . . . E 3 7.713 -11.833 58.592 1 92.68 ? H7 35R 501 A 1 HETATM 36 H H8 35R . . . E 3 5.549 -10.961 61.433 1 88.53 ? H8 35R 501 A 1 HETATM 37 H H9 35R . . . E 3 3.573 -12.305 61.33 1 87.77 ? H9 35R 501 A 1 HETATM 38 H H10 35R . . . E 3 4.133 -14.086 57.621 1 93.09 ? H10 35R 501 A 1 HETATM 39 H H11 35R . . . E 3 3.634 -15.691 55.346 1 95.27 ? H11 35R 501 A 1 HETATM 40 H H12 35R . . . E 3 4.587 -16.322 53.328 1 98.84 ? H12 35R 501 A 1 HETATM 41 H H13 35R . . . E 3 6.048 -16.611 52.006 1 110.37 ? H13 35R 501 A 1 HETATM 42 H H14 35R . . . E 3 6.468 -15.174 51.488 1 110.37 ? H14 35R 501 A 1 HETATM 43 H H16 35R . . . E 3 8.903 -17.586 50.678 1 112.52 ? H16 35R 501 A 1 HETATM 44 H H17 35R . . . E 3 7.407 -17.238 50.303 1 112.52 ? H17 35R 501 A 1 HETATM 45 H H18 35R . . . E 3 6.58 -18.674 51.863 1 112.59 ? H18 35R 501 A 1 HETATM 46 H H19 35R . . . E 3 7.733 -19.485 51.145 1 112.59 ? H19 35R 501 A 1 HETATM 47 H H20 35R . . . E 3 9.548 -18.212 54.18 1 106.64 ? H20 35R 501 A 1 HETATM 48 H H21 35R . . . E 3 9.994 -18.306 52.665 1 106.64 ? H21 35R 501 A 1 HETATM 49 H H22 35R . . . E 3 8.474 -16.277 53.871 1 108.33 ? H22 35R 501 A 1 HETATM 50 H H23 35R . . . E 3 9.735 -16.102 52.932 1 108.33 ? H23 35R 501 A 1 HETATM 51 H H24 35R . . . E 3 7.797 -14.042 54.126 1 96.75 ? H24 35R 501 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 51 #