data_6CPG
#
_model_server_result.job_id            qB34Y1qnnyvdGKcOoKN5kQ 
_model_server_result.datetime_utc      '2024-11-23 13:00:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6cpg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    6CPG 
#
_exptl.entry_id    6CPG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              381.432 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-cyclopropyl-3-{3-[5-(morpholin-4-ylmethyl)-1H-benzimidazol-2-yl]-1H-pyrazol-4-yl}urea 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6CPG 
_cell.length_a            63.86 
_cell.length_b            69.7 
_cell.length_c            175.56 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6CPG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C19 H23 N7 O2' 
_chem_comp.formula_weight    381.432 
_chem_comp.id                35R 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-cyclopropyl-3-{3-[5-(morpholin-4-ylmethyl)-1H-benzimidazol-2-yl]-1H-pyrazol-4-yl}urea 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C17 C18 35R doub 1 n y 
C17 C16 35R sing 2 n y 
C18 C19 35R sing 3 n y 
C27 C26 35R sing 4 n n 
C27 N21 35R sing 5 n n 
C26 O25 35R sing 6 n n 
C16 N15 35R sing 7 n y 
C16 C29 35R doub 8 n y 
C19 C20 35R sing 9 n n 
C19 C28 35R doub 10 n y 
C20 N21 35R sing 11 n n 
N21 C23 35R sing 12 n n 
N15 C14 35R sing 13 n y 
C29 C28 35R sing 14 n y 
C29 N30 35R sing 15 n y 
O25 C24 35R sing 16 n n 
C14 N30 35R doub 17 n y 
C14 C13 35R sing 18 n n 
N12 C13 35R doub 19 n y 
N12 N10 35R sing 20 n y 
C23 C24 35R sing 21 n n 
C13 C8 35R sing 22 n y 
N10 C9 35R sing 23 n y 
C8 C9 35R doub 24 n y 
C8 N7 35R sing 25 n n 
N7 C2 35R sing 26 n n 
C5 C4 35R sing 27 n n 
C5 C6 35R sing 28 n n 
C4 N3 35R sing 29 n n 
C4 C6 35R sing 30 n n 
C2 O1 35R doub 31 n n 
C2 N3 35R sing 32 n n 
N3 H1 35R sing 33 n n 
C4 H2 35R sing 34 n n 
C5 H3 35R sing 35 n n 
C5 H4 35R sing 36 n n 
C6 H5 35R sing 37 n n 
C6 H6 35R sing 38 n n 
N7 H7 35R sing 39 n n 
C9 H8 35R sing 40 n n 
N10 H9 35R sing 41 n n 
N15 H10 35R sing 42 n n 
C17 H11 35R sing 43 n n 
C18 H12 35R sing 44 n n 
C20 H13 35R sing 45 n n 
C20 H14 35R sing 46 n n 
C23 H16 35R sing 47 n n 
C23 H17 35R sing 48 n n 
C24 H18 35R sing 49 n n 
C24 H19 35R sing 50 n n 
C26 H20 35R sing 51 n n 
C26 H21 35R sing 52 n n 
C27 H22 35R sing 53 n n 
C27 H23 35R sing 54 n n 
C28 H24 35R sing 55 n n 
#
_atom_sites.entry_id                     6CPG 
_atom_sites.fract_transf_matrix[1][1]    0.015659 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014347 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005696 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 35R A 1 501 1 35R 35R . 
F 3 35R D 1 501 1 35R 35R . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 35R . . . F 3 27.178 20.946 69.322 1 73.97 ? O1 35R 501 D 1 
HETATM 2 C C2 35R . . . F 3 27.76 20.65 70.31 1 75.86 ? C2 35R 501 D 1 
HETATM 3 N N3 35R . . . F 3 27.786 19.265 70.801 1 74.28 ? N3 35R 501 D 1 
HETATM 4 C C4 35R . . . F 3 28.534 18.972 72.038 1 69.83 ? C4 35R 501 D 1 
HETATM 5 C C5 35R . . . F 3 29.809 18.151 71.833 1 73.41 ? C5 35R 501 D 1 
HETATM 6 C C6 35R . . . F 3 28.587 17.515 72.499 1 74.77 ? C6 35R 501 D 1 
HETATM 7 N N7 35R . . . F 3 28.488 21.645 71.099 1 76.49 ? N7 35R 501 D 1 
HETATM 8 C C8 35R . . . F 3 28.58 23.065 70.773 1 76.5 ? C8 35R 501 D 1 
HETATM 9 C C9 35R . . . F 3 27.863 23.83 69.9 1 73.94 ? C9 35R 501 D 1 
HETATM 10 N N10 35R . . . F 3 28.334 25.074 69.984 1 73.08 ? N10 35R 501 D 1 
HETATM 11 N N12 35R . . . F 3 29.368 25.093 70.918 1 75.26 ? N12 35R 501 D 1 
HETATM 12 C C13 35R . . . F 3 29.486 23.859 71.401 1 78.36 ? C13 35R 501 D 1 
HETATM 13 C C14 35R . . . F 3 30.464 23.243 72.43 1 81.06 ? C14 35R 501 D 1 
HETATM 14 N N15 35R . . . F 3 30.516 24.362 73.192 1 79.74 ? N15 35R 501 D 1 
HETATM 15 C C16 35R . . . F 3 31.346 24.102 74.221 1 78.79 ? C16 35R 501 D 1 
HETATM 16 C C17 35R . . . F 3 31.798 24.87 75.323 1 81.08 ? C17 35R 501 D 1 
HETATM 17 C C18 35R . . . F 3 32.669 24.325 76.253 1 81.71 ? C18 35R 501 D 1 
HETATM 18 C C19 35R . . . F 3 33.097 23.022 76.083 1 82.93 ? C19 35R 501 D 1 
HETATM 19 C C20 35R . . . F 3 34.068 22.673 77.232 1 88.46 ? C20 35R 501 D 1 
HETATM 20 N N21 35R . . . F 3 35.379 22.183 76.716 1 88.6 ? N21 35R 501 D 1 
HETATM 21 C C23 35R . . . F 3 36.399 22.425 77.686 1 90.82 ? C23 35R 501 D 1 
HETATM 22 C C24 35R . . . F 3 36.894 23.884 77.682 1 92.21 ? C24 35R 501 D 1 
HETATM 23 O O25 35R . . . F 3 37.252 24.372 76.385 1 91.86 ? O25 35R 501 D 1 
HETATM 24 C C26 35R . . . F 3 36.209 24.144 75.437 1 90.21 ? C26 35R 501 D 1 
HETATM 25 C C27 35R . . . F 3 35.807 22.665 75.426 1 88 ? C27 35R 501 D 1 
HETATM 26 C C28 35R . . . F 3 32.669 22.259 75.015 1 81.9 ? C28 35R 501 D 1 
HETATM 27 C C29 35R . . . F 3 31.788 22.825 74.081 1 79.93 ? C29 35R 501 D 1 
HETATM 28 N N30 35R . . . F 3 31.243 22.309 72.989 1 79.37 ? N30 35R 501 D 1 
HETATM 29 H H1 35R . . . F 3 27.374 18.641 70.377 1 89.23 ? H1 35R 501 D 1 
HETATM 30 H H2 35R . . . F 3 28.541 19.615 72.764 1 83.88 ? H2 35R 501 D 1 
HETATM 31 H H3 35R . . . F 3 30.545 18.366 72.427 1 88.18 ? H3 35R 501 D 1 
HETATM 32 H H4 35R . . . F 3 29.983 17.869 70.921 1 88.18 ? H4 35R 501 D 1 
HETATM 33 H H5 35R . . . F 3 28.655 17.381 73.457 1 89.81 ? H5 35R 501 D 1 
HETATM 34 H H6 35R . . . F 3 28.094 16.884 71.952 1 89.81 ? H6 35R 501 D 1 
HETATM 35 H H7 35R . . . F 3 28.891 21.373 71.809 1 91.88 ? H7 35R 501 D 1 
HETATM 36 H H8 35R . . . F 3 27.173 23.537 69.348 1 88.82 ? H8 35R 501 D 1 
HETATM 37 H H9 35R . . . F 3 28.049 25.751 69.536 1 87.78 ? H9 35R 501 D 1 
HETATM 38 H H10 35R . . . F 3 30.099 25.1 73.047 1 95.78 ? H10 35R 501 D 1 
HETATM 39 H H11 35R . . . F 3 31.507 25.748 75.424 1 97.39 ? H11 35R 501 D 1 
HETATM 40 H H12 35R . . . F 3 32.961 24.828 76.979 1 98.14 ? H12 35R 501 D 1 
HETATM 41 H H13 35R . . . F 3 34.218 23.467 77.769 1 106.25 ? H13 35R 501 D 1 
HETATM 42 H H14 35R . . . F 3 33.668 21.982 77.783 1 106.25 ? H14 35R 501 D 1 
HETATM 43 H H16 35R . . . F 3 36.046 22.219 78.566 1 109.08 ? H16 35R 501 D 1 
HETATM 44 H H17 35R . . . F 3 37.151 21.842 77.499 1 109.08 ? H17 35R 501 D 1 
HETATM 45 H H18 35R . . . F 3 36.189 24.448 78.038 1 110.75 ? H18 35R 501 D 1 
HETATM 46 H H19 35R . . . F 3 37.673 23.946 78.258 1 110.75 ? H19 35R 501 D 1 
HETATM 47 H H20 35R . . . F 3 36.518 24.398 74.553 1 108.35 ? H20 35R 501 D 1 
HETATM 48 H H21 35R . . . F 3 35.439 24.684 75.673 1 108.35 ? H21 35R 501 D 1 
HETATM 49 H H22 35R . . . F 3 35.08 22.547 74.795 1 105.69 ? H22 35R 501 D 1 
HETATM 50 H H23 35R . . . F 3 36.569 22.139 75.137 1 105.69 ? H23 35R 501 D 1 
HETATM 51 H H24 35R . . . F 3 32.96 21.381 74.916 1 98.37 ? H24 35R 501 D 1 
#
_model_server_stats.io_time_ms              32 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           382 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           51 
#