data_6CPN # _model_server_result.job_id Zak-btMjGmaWq3f13bE5cQ _model_server_result.datetime_utc '2024-10-28 02:43:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cpn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1008}' # _entry.id 6CPN # _exptl.entry_id 6CPN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6CPN _cell.length_a 66.262 _cell.length_b 66.262 _cell.length_c 221.407 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CPN _symmetry.cell_setting ? _symmetry.Int_Tables_number 151 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 1 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 J N N ? 7 O N N ? 7 Q N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG A 1002 NAG 4 n D NAG 2 D 2 NAG E 1003 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 107 A CYS 107 1_555 A SG CYS 163 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? disulf ? disulf2 B SG CYS 15 B CYS 15 1_555 B SG CYS 79 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? disulf ? disulf3 B SG CYS 117 B CYS 117 1_555 B SG CYS 173 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? covale ? covale1 A ND2 ASN 78 A ASN 78 1_555 E C1 NAG . A NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale2 A ND2 ASN 118 A ASN 118 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale3 B ND2 ASN 19 B ASN 19 1_555 L C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale4 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? metalc ? metalc1 F O4 SO4 . A SO4 1004 1_555 J NA NA . A NA 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? metalc ? metalc2 J NA NA . A NA 1008 1_555 R O HOH . A HOH 1155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.015 ? metalc ? metalc3 N O1 SO4 . B SO4 203 1_555 O NA NA . B NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc4 P O1 SO4 . C SO4 401 1_555 Q NA NA . C NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6CPN _atom_sites.fract_transf_matrix[1][1] 0.015092 _atom_sites.fract_transf_matrix[1][2] 0.008713 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017426 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004517 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG A 1 1001 1001 NAG NAG . F 6 SO4 A 1 1004 2 SO4 SO4 . G 6 SO4 A 1 1005 3 SO4 SO4 . H 6 SO4 A 1 1006 6 SO4 SO4 . I 6 SO4 A 1 1007 7 SO4 SO4 . J 7 NA A 1 1008 2 NA NA . K 6 SO4 A 1 1009 1 SO4 SO4 . L 5 NAG B 1 201 1003 NAG NAG . M 6 SO4 B 1 202 4 SO4 SO4 . N 6 SO4 B 1 203 5 SO4 SO4 . O 7 NA B 1 204 3 NA NA . P 6 SO4 C 1 401 1 SO4 SO4 . Q 7 NA C 1 402 1 NA NA . R 8 HOH A 1 1101 1 HOH HOH . R 8 HOH A 2 1102 39 HOH HOH . R 8 HOH A 3 1103 12 HOH HOH . R 8 HOH A 4 1104 20 HOH HOH . R 8 HOH A 5 1105 90 HOH HOH . R 8 HOH A 6 1106 314 HOH HOH . R 8 HOH A 7 1107 46 HOH HOH . R 8 HOH A 8 1108 55 HOH HOH . R 8 HOH A 9 1109 2 HOH HOH . R 8 HOH A 10 1110 297 HOH HOH . R 8 HOH A 11 1111 21 HOH HOH . R 8 HOH A 12 1112 26 HOH HOH . R 8 HOH A 13 1113 33 HOH HOH . R 8 HOH A 14 1114 9 HOH HOH . R 8 HOH A 15 1115 65 HOH HOH . R 8 HOH A 16 1116 91 HOH HOH . R 8 HOH A 17 1117 238 HOH HOH . R 8 HOH A 18 1118 23 HOH HOH . R 8 HOH A 19 1119 29 HOH HOH . R 8 HOH A 20 1120 42 HOH HOH . R 8 HOH A 21 1121 103 HOH HOH . R 8 HOH A 22 1122 263 HOH HOH . R 8 HOH A 23 1123 96 HOH HOH . R 8 HOH A 24 1124 69 HOH HOH . R 8 HOH A 25 1125 6 HOH HOH . R 8 HOH A 26 1126 246 HOH HOH . R 8 HOH A 27 1127 95 HOH HOH . R 8 HOH A 28 1128 16 HOH HOH . R 8 HOH A 29 1129 294 HOH HOH . R 8 HOH A 30 1130 24 HOH HOH . R 8 HOH A 31 1131 13 HOH HOH . R 8 HOH A 32 1132 53 HOH HOH . R 8 HOH A 33 1133 108 HOH HOH . R 8 HOH A 34 1134 285 HOH HOH . R 8 HOH A 35 1135 111 HOH HOH . R 8 HOH A 36 1136 85 HOH HOH . R 8 HOH A 37 1137 31 HOH HOH . R 8 HOH A 38 1138 307 HOH HOH . R 8 HOH A 39 1139 64 HOH HOH . R 8 HOH A 40 1140 8 HOH HOH . R 8 HOH A 41 1141 292 HOH HOH . R 8 HOH A 42 1142 253 HOH HOH . R 8 HOH A 43 1143 72 HOH HOH . R 8 HOH A 44 1144 79 HOH HOH . R 8 HOH A 45 1145 66 HOH HOH . R 8 HOH A 46 1146 86 HOH HOH . R 8 HOH A 47 1147 58 HOH HOH . R 8 HOH A 48 1148 44 HOH HOH . R 8 HOH A 49 1149 27 HOH HOH . R 8 HOH A 50 1150 317 HOH HOH . R 8 HOH A 51 1151 291 HOH HOH . R 8 HOH A 52 1152 10 HOH HOH . R 8 HOH A 53 1153 100 HOH HOH . R 8 HOH A 54 1154 76 HOH HOH . R 8 HOH A 55 1155 67 HOH HOH . R 8 HOH A 56 1156 101 HOH HOH . R 8 HOH A 57 1157 62 HOH HOH . R 8 HOH A 58 1158 119 HOH HOH . R 8 HOH A 59 1159 22 HOH HOH . R 8 HOH A 60 1160 54 HOH HOH . R 8 HOH A 61 1161 301 HOH HOH . R 8 HOH A 62 1162 264 HOH HOH . R 8 HOH A 63 1163 274 HOH HOH . R 8 HOH A 64 1164 114 HOH HOH . R 8 HOH A 65 1165 51 HOH HOH . R 8 HOH A 66 1166 37 HOH HOH . R 8 HOH A 67 1167 312 HOH HOH . R 8 HOH A 68 1168 105 HOH HOH . R 8 HOH A 69 1169 74 HOH HOH . R 8 HOH A 70 1170 255 HOH HOH . R 8 HOH A 71 1171 73 HOH HOH . R 8 HOH A 72 1172 70 HOH HOH . R 8 HOH A 73 1173 278 HOH HOH . R 8 HOH A 74 1174 252 HOH HOH . R 8 HOH A 75 1175 249 HOH HOH . R 8 HOH A 76 1176 313 HOH HOH . R 8 HOH A 77 1177 265 HOH HOH . R 8 HOH A 78 1178 286 HOH HOH . R 8 HOH A 79 1179 276 HOH HOH . R 8 HOH A 80 1180 271 HOH HOH . R 8 HOH A 81 1181 273 HOH HOH . R 8 HOH A 82 1182 104 HOH HOH . R 8 HOH A 83 1183 316 HOH HOH . R 8 HOH A 84 1184 287 HOH HOH . R 8 HOH A 85 1185 299 HOH HOH . R 8 HOH A 86 1186 296 HOH HOH . R 8 HOH A 87 1187 98 HOH HOH . R 8 HOH A 88 1188 269 HOH HOH . R 8 HOH A 89 1189 302 HOH HOH . R 8 HOH A 90 1190 262 HOH HOH . R 8 HOH A 91 1191 315 HOH HOH . R 8 HOH A 92 1192 261 HOH HOH . R 8 HOH A 93 1193 250 HOH HOH . R 8 HOH A 94 1194 260 HOH HOH . R 8 HOH A 95 1195 319 HOH HOH . R 8 HOH A 96 1196 282 HOH HOH . R 8 HOH A 97 1197 270 HOH HOH . S 8 HOH B 1 301 303 HOH HOH . S 8 HOH B 2 302 112 HOH HOH . S 8 HOH B 3 303 288 HOH HOH . S 8 HOH B 4 304 3 HOH HOH . S 8 HOH B 5 305 47 HOH HOH . S 8 HOH B 6 306 28 HOH HOH . S 8 HOH B 7 307 75 HOH HOH . S 8 HOH B 8 308 60 HOH HOH . S 8 HOH B 9 309 309 HOH HOH . S 8 HOH B 10 310 19 HOH HOH . S 8 HOH B 11 311 35 HOH HOH . S 8 HOH B 12 312 92 HOH HOH . S 8 HOH B 13 313 109 HOH HOH . S 8 HOH B 14 314 279 HOH HOH . S 8 HOH B 15 315 115 HOH HOH . S 8 HOH B 16 316 7 HOH HOH . S 8 HOH B 17 317 30 HOH HOH . S 8 HOH B 18 318 40 HOH HOH . S 8 HOH B 19 319 289 HOH HOH . S 8 HOH B 20 320 320 HOH HOH . S 8 HOH B 21 321 107 HOH HOH . S 8 HOH B 22 322 25 HOH HOH . S 8 HOH B 23 323 68 HOH HOH . S 8 HOH B 24 324 36 HOH HOH . S 8 HOH B 25 325 43 HOH HOH . S 8 HOH B 26 326 17 HOH HOH . S 8 HOH B 27 327 118 HOH HOH . S 8 HOH B 28 328 113 HOH HOH . S 8 HOH B 29 329 59 HOH HOH . S 8 HOH B 30 330 77 HOH HOH . S 8 HOH B 31 331 275 HOH HOH . S 8 HOH B 32 332 298 HOH HOH . S 8 HOH B 33 333 78 HOH HOH . S 8 HOH B 34 334 61 HOH HOH . S 8 HOH B 35 335 242 HOH HOH . S 8 HOH B 36 336 71 HOH HOH . S 8 HOH B 37 337 82 HOH HOH . S 8 HOH B 38 338 4 HOH HOH . S 8 HOH B 39 339 267 HOH HOH . S 8 HOH B 40 340 63 HOH HOH . S 8 HOH B 41 341 50 HOH HOH . S 8 HOH B 42 342 84 HOH HOH . S 8 HOH B 43 343 311 HOH HOH . S 8 HOH B 44 344 277 HOH HOH . S 8 HOH B 45 345 235 HOH HOH . S 8 HOH B 46 346 14 HOH HOH . S 8 HOH B 47 347 41 HOH HOH . S 8 HOH B 48 348 110 HOH HOH . S 8 HOH B 49 349 97 HOH HOH . S 8 HOH B 50 350 34 HOH HOH . S 8 HOH B 51 351 11 HOH HOH . S 8 HOH B 52 352 99 HOH HOH . S 8 HOH B 53 353 5 HOH HOH . S 8 HOH B 54 354 306 HOH HOH . S 8 HOH B 55 355 245 HOH HOH . S 8 HOH B 56 356 240 HOH HOH . S 8 HOH B 57 357 48 HOH HOH . S 8 HOH B 58 358 102 HOH HOH . S 8 HOH B 59 359 81 HOH HOH . S 8 HOH B 60 360 87 HOH HOH . S 8 HOH B 61 361 93 HOH HOH . S 8 HOH B 62 362 305 HOH HOH . S 8 HOH B 63 363 308 HOH HOH . S 8 HOH B 64 364 254 HOH HOH . S 8 HOH B 65 365 83 HOH HOH . S 8 HOH B 66 366 88 HOH HOH . S 8 HOH B 67 367 284 HOH HOH . S 8 HOH B 68 368 293 HOH HOH . S 8 HOH B 69 369 116 HOH HOH . S 8 HOH B 70 370 300 HOH HOH . S 8 HOH B 71 371 318 HOH HOH . S 8 HOH B 72 372 259 HOH HOH . S 8 HOH B 73 373 310 HOH HOH . S 8 HOH B 74 374 94 HOH HOH . S 8 HOH B 75 375 89 HOH HOH . S 8 HOH B 76 376 56 HOH HOH . S 8 HOH B 77 377 295 HOH HOH . S 8 HOH B 78 378 248 HOH HOH . T 8 HOH C 1 501 80 HOH HOH . T 8 HOH C 2 502 268 HOH HOH . T 8 HOH C 3 503 57 HOH HOH . T 8 HOH C 4 504 52 HOH HOH . T 8 HOH C 5 505 18 HOH HOH . T 8 HOH C 6 506 256 HOH HOH . T 8 HOH C 7 507 117 HOH HOH . T 8 HOH C 8 508 283 HOH HOH . T 8 HOH C 9 509 243 HOH HOH . T 8 HOH C 10 510 106 HOH HOH . T 8 HOH C 11 511 280 HOH HOH . T 8 HOH C 12 512 304 HOH HOH . T 8 HOH C 13 513 49 HOH HOH . T 8 HOH C 14 514 251 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 7 _atom_site.Cartn_x 16.629 _atom_site.Cartn_y 7.309 _atom_site.Cartn_z 31.868 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 71.51 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1008 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #