data_6CR2 # _model_server_result.job_id khn8Gcm6orvxWKMzKwWMZA _model_server_result.datetime_utc '2024-10-13 01:17:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cr2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 6CR2 # _exptl.entry_id 6CR2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6CR2 _cell.length_a 108.438 _cell.length_b 108.438 _cell.length_c 90.999 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CR2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 417 A CYS 463 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc2 C FE HEM . A HEM 601 1_555 D NAW LFV . A LFV 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc3 B SG CYS 417 B CYS 463 1_555 E FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc4 E FE HEM . B HEM 601 1_555 F NAW LFV . B LFV 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 6CR2 _atom_sites.fract_transf_matrix[1][1] 0.009222 _atom_sites.fract_transf_matrix[1][2] 0.005324 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010648 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010989 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 601 601 HEM HEM . D 3 LFV A 1 602 602 LFV LFV . E 2 HEM B 1 601 601 HEM HEM . F 3 LFV B 1 602 602 LFV LFV . G 4 HOH A 1 701 22 HOH HOH . G 4 HOH A 2 702 65 HOH HOH . G 4 HOH A 3 703 86 HOH HOH . G 4 HOH A 4 704 166 HOH HOH . G 4 HOH A 5 705 24 HOH HOH . G 4 HOH A 6 706 1 HOH HOH . G 4 HOH A 7 707 46 HOH HOH . G 4 HOH A 8 708 44 HOH HOH . G 4 HOH A 9 709 126 HOH HOH . G 4 HOH A 10 710 52 HOH HOH . G 4 HOH A 11 711 9 HOH HOH . G 4 HOH A 12 712 8 HOH HOH . G 4 HOH A 13 713 16 HOH HOH . G 4 HOH A 14 714 75 HOH HOH . G 4 HOH A 15 715 109 HOH HOH . G 4 HOH A 16 716 189 HOH HOH . G 4 HOH A 17 717 190 HOH HOH . G 4 HOH A 18 718 95 HOH HOH . G 4 HOH A 19 719 28 HOH HOH . G 4 HOH A 20 720 121 HOH HOH . G 4 HOH A 21 721 108 HOH HOH . G 4 HOH A 22 722 59 HOH HOH . G 4 HOH A 23 723 21 HOH HOH . G 4 HOH A 24 724 111 HOH HOH . G 4 HOH A 25 725 47 HOH HOH . G 4 HOH A 26 726 20 HOH HOH . G 4 HOH A 27 727 26 HOH HOH . G 4 HOH A 28 728 110 HOH HOH . G 4 HOH A 29 729 42 HOH HOH . G 4 HOH A 30 730 4 HOH HOH . G 4 HOH A 31 731 88 HOH HOH . G 4 HOH A 32 732 113 HOH HOH . G 4 HOH A 33 733 69 HOH HOH . G 4 HOH A 34 734 33 HOH HOH . G 4 HOH A 35 735 60 HOH HOH . G 4 HOH A 36 736 220 HOH HOH . G 4 HOH A 37 737 127 HOH HOH . G 4 HOH A 38 738 5 HOH HOH . G 4 HOH A 39 739 198 HOH HOH . G 4 HOH A 40 740 134 HOH HOH . G 4 HOH A 41 741 51 HOH HOH . G 4 HOH A 42 742 54 HOH HOH . G 4 HOH A 43 743 96 HOH HOH . G 4 HOH A 44 744 101 HOH HOH . G 4 HOH A 45 745 150 HOH HOH . G 4 HOH A 46 746 255 HOH HOH . G 4 HOH A 47 747 214 HOH HOH . G 4 HOH A 48 748 31 HOH HOH . G 4 HOH A 49 749 160 HOH HOH . G 4 HOH A 50 750 73 HOH HOH . G 4 HOH A 51 751 17 HOH HOH . G 4 HOH A 52 752 132 HOH HOH . G 4 HOH A 53 753 180 HOH HOH . G 4 HOH A 54 754 48 HOH HOH . G 4 HOH A 55 755 12 HOH HOH . G 4 HOH A 56 756 303 HOH HOH . G 4 HOH A 57 757 165 HOH HOH . G 4 HOH A 58 758 79 HOH HOH . G 4 HOH A 59 759 27 HOH HOH . G 4 HOH A 60 760 209 HOH HOH . G 4 HOH A 61 761 6 HOH HOH . G 4 HOH A 62 762 199 HOH HOH . G 4 HOH A 63 763 32 HOH HOH . G 4 HOH A 64 764 30 HOH HOH . G 4 HOH A 65 765 91 HOH HOH . G 4 HOH A 66 766 297 HOH HOH . G 4 HOH A 67 767 14 HOH HOH . G 4 HOH A 68 768 296 HOH HOH . G 4 HOH A 69 769 40 HOH HOH . G 4 HOH A 70 770 43 HOH HOH . G 4 HOH A 71 771 254 HOH HOH . G 4 HOH A 72 772 221 HOH HOH . G 4 HOH A 73 773 19 HOH HOH . G 4 HOH A 74 774 300 HOH HOH . G 4 HOH A 75 775 35 HOH HOH . G 4 HOH A 76 776 307 HOH HOH . G 4 HOH A 77 777 302 HOH HOH . G 4 HOH A 78 778 130 HOH HOH . G 4 HOH A 79 779 308 HOH HOH . G 4 HOH A 80 780 306 HOH HOH . G 4 HOH A 81 781 301 HOH HOH . G 4 HOH A 82 782 299 HOH HOH . H 4 HOH B 1 701 68 HOH HOH . H 4 HOH B 2 702 25 HOH HOH . H 4 HOH B 3 703 57 HOH HOH . H 4 HOH B 4 704 34 HOH HOH . H 4 HOH B 5 705 55 HOH HOH . H 4 HOH B 6 706 85 HOH HOH . H 4 HOH B 7 707 72 HOH HOH . H 4 HOH B 8 708 97 HOH HOH . H 4 HOH B 9 709 11 HOH HOH . H 4 HOH B 10 710 49 HOH HOH . H 4 HOH B 11 711 174 HOH HOH . H 4 HOH B 12 712 81 HOH HOH . H 4 HOH B 13 713 148 HOH HOH . H 4 HOH B 14 714 38 HOH HOH . H 4 HOH B 15 715 80 HOH HOH . H 4 HOH B 16 716 112 HOH HOH . H 4 HOH B 17 717 106 HOH HOH . H 4 HOH B 18 718 187 HOH HOH . H 4 HOH B 19 719 71 HOH HOH . H 4 HOH B 20 720 118 HOH HOH . H 4 HOH B 21 721 67 HOH HOH . H 4 HOH B 22 722 298 HOH HOH . H 4 HOH B 23 723 182 HOH HOH . H 4 HOH B 24 724 304 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 2 -78.362 215.238 -21.497 1 14.76 ? CHA HEM 601 B 1 HETATM 2 C CHB HEM . . . E 2 -76.196 211.169 -23.037 1 19.21 ? CHB HEM 601 B 1 HETATM 3 C CHC HEM . . . E 2 -72.349 212.298 -20.266 1 16.05 ? CHC HEM 601 B 1 HETATM 4 C CHD HEM . . . E 2 -74.777 216.022 -18.34 1 16.96 ? CHD HEM 601 B 1 HETATM 5 C C1A HEM . . . E 2 -78.075 214.058 -22.168 1 16.97 ? C1A HEM 601 B 1 HETATM 6 C C2A HEM . . . E 2 -78.959 213.444 -23.075 1 18.67 ? C2A HEM 601 B 1 HETATM 7 C C3A HEM . . . E 2 -78.364 212.301 -23.508 1 16.26 ? C3A HEM 601 B 1 HETATM 8 C C4A HEM . . . E 2 -77.111 212.196 -22.87 1 18.22 ? C4A HEM 601 B 1 HETATM 9 C CMA HEM . . . E 2 -78.956 211.338 -24.505 1 16.1 ? CMA HEM 601 B 1 HETATM 10 C CAA HEM . . . E 2 -80.309 213.974 -23.482 1 18.9 ? CAA HEM 601 B 1 HETATM 11 C CBA HEM . . . E 2 -81.381 213.266 -22.651 1 20.46 ? CBA HEM 601 B 1 HETATM 12 C CGA HEM . . . E 2 -82.747 213.862 -22.871 1 24.74 ? CGA HEM 601 B 1 HETATM 13 O O1A HEM . . . E 2 -83.6 213.831 -21.956 1 31.89 ? O1A HEM 601 B 1 HETATM 14 O O2A HEM . . . E 2 -83.052 214.389 -23.963 1 29.73 ? O2A HEM 601 B 1 HETATM 15 C C1B HEM . . . E 2 -74.951 211.183 -22.396 1 17.8 ? C1B HEM 601 B 1 HETATM 16 C C2B HEM . . . E 2 -73.964 210.201 -22.683 1 18.27 ? C2B HEM 601 B 1 HETATM 17 C C3B HEM . . . E 2 -72.876 210.496 -21.913 1 18.92 ? C3B HEM 601 B 1 HETATM 18 C C4B HEM . . . E 2 -73.245 211.718 -21.161 1 16.39 ? C4B HEM 601 B 1 HETATM 19 C CMB HEM . . . E 2 -74.114 209.05 -23.645 1 18.82 ? CMB HEM 601 B 1 HETATM 20 C CAB HEM . . . E 2 -71.55 209.859 -21.822 1 20.18 ? CAB HEM 601 B 1 HETATM 21 C CBB HEM . . . E 2 -71.139 208.936 -22.687 1 23.87 ? CBB HEM 601 B 1 HETATM 22 C C1C HEM . . . E 2 -72.653 213.411 -19.488 1 17.43 ? C1C HEM 601 B 1 HETATM 23 C C2C HEM . . . E 2 -71.799 214.055 -18.579 1 16.95 ? C2C HEM 601 B 1 HETATM 24 C C3C HEM . . . E 2 -72.499 215.11 -18.02 1 16.06 ? C3C HEM 601 B 1 HETATM 25 C C4C HEM . . . E 2 -73.79 215.095 -18.612 1 16.65 ? C4C HEM 601 B 1 HETATM 26 C CMC HEM . . . E 2 -70.378 213.647 -18.28 1 18.31 ? CMC HEM 601 B 1 HETATM 27 C CAC HEM . . . E 2 -72.057 216.133 -17.054 1 17.31 ? CAC HEM 601 B 1 HETATM 28 C CBC HEM . . . E 2 -70.784 216.295 -16.705 1 18.51 ? CBC HEM 601 B 1 HETATM 29 C C1D HEM . . . E 2 -75.943 216.06 -19.114 1 16.41 ? C1D HEM 601 B 1 HETATM 30 C C2D HEM . . . E 2 -76.891 217.164 -18.912 1 16.34 ? C2D HEM 601 B 1 HETATM 31 C C3D HEM . . . E 2 -77.902 216.951 -19.781 1 17.77 ? C3D HEM 601 B 1 HETATM 32 C C4D HEM . . . E 2 -77.514 215.734 -20.506 1 14.27 ? C4D HEM 601 B 1 HETATM 33 C CMD HEM . . . E 2 -76.796 218.304 -17.931 1 16.58 ? CMD HEM 601 B 1 HETATM 34 C CAD HEM . . . E 2 -79.108 217.837 -19.96 1 18.19 ? CAD HEM 601 B 1 HETATM 35 C CBD HEM . . . E 2 -80.449 217.148 -19.7 1 22.24 ? CBD HEM 601 B 1 HETATM 36 C CGD HEM . . . E 2 -81.603 218.05 -20.059 1 24.98 ? CGD HEM 601 B 1 HETATM 37 O O1D HEM . . . E 2 -82.776 217.638 -19.922 1 26.48 ? O1D HEM 601 B 1 HETATM 38 O O2D HEM . . . E 2 -81.421 219.208 -20.495 1 26.64 ? O2D HEM 601 B 1 HETATM 39 N NA HEM . . . E 2 -76.966 213.257 -22.006 1 16.71 ? NA HEM 601 B 1 HETATM 40 N NB HEM . . . E 2 -74.491 212.06 -21.5 1 16.93 ? NB HEM 601 B 1 HETATM 41 N NC HEM . . . E 2 -73.875 214.042 -19.493 1 16.7 ? NC HEM 601 B 1 HETATM 42 N ND HEM . . . E 2 -76.351 215.233 -20.079 1 16.82 ? ND HEM 601 B 1 HETATM 43 FE FE HEM . . . E 2 -75.517 213.72 -20.742 1 19.56 ? FE HEM 601 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #