data_6CT3 # _model_server_result.job_id ZUM6UFE5lBRS4L7rB9qd5A _model_server_result.datetime_utc '2025-03-06 07:33:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ct3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 6CT3 # _exptl.entry_id 6CT3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 164.118 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-nitro-2-oxidanyl-benzenecarbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CT3 _cell.length_a 80.348 _cell.length_b 80.348 _cell.length_c 106.332 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CT3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H4 N2 O3' _chem_comp.formula_weight 164.118 _chem_comp.id 6VP _chem_comp.mon_nstd_flag . _chem_comp.name 5-nitro-2-oxidanyl-benzenecarbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-hydroxy-5-nitrobenzonitrile # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAA CAE 6VP trip 1 n n CAE CAJ 6VP sing 2 n n OAB CAI 6VP sing 3 n n CAJ CAI 6VP doub 4 n y CAJ CAH 6VP sing 5 n y CAI CAF 6VP sing 6 n y CAF CAG 6VP doub 7 n y CAH CAK 6VP doub 8 n y CAG CAK 6VP sing 9 n y CAK NAL 6VP sing 10 n n NAL OAD 6VP doub 11 n n NAL OAC 6VP sing 12 n n CAH H1 6VP sing 13 n n OAB H2 6VP sing 14 n n CAF H3 6VP sing 15 n n CAG H4 6VP sing 16 n n # _atom_sites.entry_id 6CT3 _atom_sites.fract_transf_matrix[1][1] 0.012446 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012446 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009405 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 6 GOL GOL . C 2 GOL A 1 302 7 GOL GOL . D 2 GOL A 1 303 8 GOL GOL . E 2 GOL A 1 304 9 GOL GOL . F 3 6VP A 1 305 1 6VP DRG . G 4 SO4 A 1 306 1 SO4 SO4 . H 4 SO4 A 1 307 2 SO4 SO4 . I 5 HOH A 1 401 86 HOH HOH . I 5 HOH A 2 402 54 HOH HOH . I 5 HOH A 3 403 68 HOH HOH . I 5 HOH A 4 404 38 HOH HOH . I 5 HOH A 5 405 71 HOH HOH . I 5 HOH A 6 406 69 HOH HOH . I 5 HOH A 7 407 30 HOH HOH . I 5 HOH A 8 408 62 HOH HOH . I 5 HOH A 9 409 28 HOH HOH . I 5 HOH A 10 410 90 HOH HOH . I 5 HOH A 11 411 61 HOH HOH . I 5 HOH A 12 412 50 HOH HOH . I 5 HOH A 13 413 66 HOH HOH . I 5 HOH A 14 414 73 HOH HOH . I 5 HOH A 15 415 75 HOH HOH . I 5 HOH A 16 416 57 HOH HOH . I 5 HOH A 17 417 18 HOH HOH . I 5 HOH A 18 418 31 HOH HOH . I 5 HOH A 19 419 51 HOH HOH . I 5 HOH A 20 420 64 HOH HOH . I 5 HOH A 21 421 60 HOH HOH . I 5 HOH A 22 422 300 HOH HOH . I 5 HOH A 23 423 53 HOH HOH . I 5 HOH A 24 424 17 HOH HOH . I 5 HOH A 25 425 78 HOH HOH . I 5 HOH A 26 426 25 HOH HOH . I 5 HOH A 27 427 47 HOH HOH . I 5 HOH A 28 428 13 HOH HOH . I 5 HOH A 29 429 56 HOH HOH . I 5 HOH A 30 430 14 HOH HOH . I 5 HOH A 31 431 43 HOH HOH . I 5 HOH A 32 432 33 HOH HOH . I 5 HOH A 33 433 52 HOH HOH . I 5 HOH A 34 434 29 HOH HOH . I 5 HOH A 35 435 91 HOH HOH . I 5 HOH A 36 436 24 HOH HOH . I 5 HOH A 37 437 55 HOH HOH . I 5 HOH A 38 438 10 HOH HOH . I 5 HOH A 39 439 9 HOH HOH . I 5 HOH A 40 440 20 HOH HOH . I 5 HOH A 41 441 82 HOH HOH . I 5 HOH A 42 442 92 HOH HOH . I 5 HOH A 43 443 49 HOH HOH . I 5 HOH A 44 444 59 HOH HOH . I 5 HOH A 45 445 15 HOH HOH . I 5 HOH A 46 446 1 HOH HOH . I 5 HOH A 47 447 48 HOH HOH . I 5 HOH A 48 448 70 HOH HOH . I 5 HOH A 49 449 63 HOH HOH . I 5 HOH A 50 450 19 HOH HOH . I 5 HOH A 51 451 40 HOH HOH . I 5 HOH A 52 452 34 HOH HOH . I 5 HOH A 53 453 39 HOH HOH . I 5 HOH A 54 454 42 HOH HOH . I 5 HOH A 55 455 36 HOH HOH . I 5 HOH A 56 456 84 HOH HOH . I 5 HOH A 57 457 6 HOH HOH . I 5 HOH A 58 458 88 HOH HOH . I 5 HOH A 59 459 37 HOH HOH . I 5 HOH A 60 460 45 HOH HOH . I 5 HOH A 61 461 3 HOH HOH . I 5 HOH A 62 462 5 HOH HOH . I 5 HOH A 63 463 89 HOH HOH . I 5 HOH A 64 464 74 HOH HOH . I 5 HOH A 65 465 2 HOH HOH . I 5 HOH A 66 466 16 HOH HOH . I 5 HOH A 67 467 23 HOH HOH . I 5 HOH A 68 468 67 HOH HOH . I 5 HOH A 69 469 4 HOH HOH . I 5 HOH A 70 470 8 HOH HOH . I 5 HOH A 71 471 46 HOH HOH . I 5 HOH A 72 472 7 HOH HOH . I 5 HOH A 73 473 65 HOH HOH . I 5 HOH A 74 474 93 HOH HOH . I 5 HOH A 75 475 26 HOH HOH . I 5 HOH A 76 476 35 HOH HOH . I 5 HOH A 77 477 41 HOH HOH . I 5 HOH A 78 478 83 HOH HOH . I 5 HOH A 79 479 11 HOH HOH . I 5 HOH A 80 480 72 HOH HOH . I 5 HOH A 81 481 32 HOH HOH . I 5 HOH A 82 482 12 HOH HOH . I 5 HOH A 83 483 81 HOH HOH . I 5 HOH A 84 484 21 HOH HOH . I 5 HOH A 85 485 87 HOH HOH . I 5 HOH A 86 486 80 HOH HOH . I 5 HOH A 87 487 27 HOH HOH . I 5 HOH A 88 488 76 HOH HOH . I 5 HOH A 89 489 79 HOH HOH . I 5 HOH A 90 490 22 HOH HOH . I 5 HOH A 91 491 85 HOH HOH . I 5 HOH A 92 492 77 HOH HOH . I 5 HOH A 93 493 44 HOH HOH . I 5 HOH A 94 494 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NAA 6VP . . . F 3 1.953 -28.324 -8.954 0.7 54.98 ? NAA 6VP 305 A 1 HETATM 2 C CAE 6VP . . . F 3 1.835 -28.569 -7.854 0.7 41.32 ? CAE 6VP 305 A 1 HETATM 3 C CAJ 6VP . . . F 3 1.703 -28.879 -6.452 0.7 35.8 ? CAJ 6VP 305 A 1 HETATM 4 C CAH 6VP . . . F 3 2.749 -29.577 -5.815 0.7 31.26 ? CAH 6VP 305 A 1 HETATM 5 C CAI 6VP . . . F 3 0.565 -28.506 -5.713 0.7 43.98 ? CAI 6VP 305 A 1 HETATM 6 O OAB 6VP . . . F 3 -0.436 -27.842 -6.346 0.7 47.73 ? OAB 6VP 305 A 1 HETATM 7 C CAF 6VP . . . F 3 0.446 -28.815 -4.345 0.7 40.19 ? CAF 6VP 305 A 1 HETATM 8 C CAG 6VP . . . F 3 1.496 -29.51 -3.722 0.7 30.08 ? CAG 6VP 305 A 1 HETATM 9 C CAK 6VP . . . F 3 2.655 -29.898 -4.446 0.7 33.26 ? CAK 6VP 305 A 1 HETATM 10 N NAL 6VP . . . F 3 3.646 -30.572 -3.839 0.7 38.46 ? NAL 6VP 305 A 1 HETATM 11 O OAD 6VP . . . F 3 4.808 -30.972 -4.57 0.7 47.95 ? OAD 6VP 305 A 1 HETATM 12 O OAC 6VP . . . F 3 3.566 -30.907 -2.446 0.7 46.67 ? OAC 6VP 305 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 12 #