data_6CTA # _model_server_result.job_id OxtJqpZw-Ii9YPTSi541Pw _model_server_result.datetime_utc '2024-12-02 04:49:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cta # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":604}' # _entry.id 6CTA # _exptl.entry_id 6CTA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6CTA _cell.length_a 99.782 _cell.length_b 99.782 _cell.length_c 236.769 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CTA _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 70 A GLU 225 1_555 E MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc2 A OD2 ASP 72 A ASP 227 1_555 E MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? metalc ? metalc3 A OD1 ASP 72 A ASP 227 1_555 F MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc4 A OD2 ASP 164 A ASP 319 1_555 F MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc5 A NE2 HIS 235 A HIS 390 1_555 D ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc6 A SG CYS 241 A CYS 396 1_555 D ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc7 A SG CYS 242 A CYS 397 1_555 D ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc8 A SG CYS 249 A CYS 404 1_555 D ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc9 E MG MG . A MG 602 1_555 G O2B ATP . A ATP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc10 E MG MG . A MG 602 1_555 G O2G ATP . A ATP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc11 F MG MG . A MG 603 1_555 G O1A ATP . A ATP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? hydrog WATSON-CRICK hydrog1 B N3 DC 4 B DC 4 1_555 C N1 DG 15 C DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N4 DC 4 B DC 4 1_555 C O6 DG 15 C DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O2 DC 4 B DC 4 1_555 C N2 DG 15 C DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 DG 5 B DG 5 1_555 C N3 DC 14 C DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N2 DG 5 B DG 5 1_555 C O2 DC 14 C DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O6 DG 5 B DG 5 1_555 C N4 DC 14 C DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N3 DT 6 B DT 6 1_555 C N1 DA 13 C DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B O4 DT 6 B DT 6 1_555 C N6 DA 13 C DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N3 DC 7 B DC 7 1_555 C N1 DG 12 C DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N4 DC 7 B DC 7 1_555 C O6 DG 12 C DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O2 DC 7 B DC 7 1_555 C N2 DG 12 C DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N3 DT 8 B DT 8 1_555 C N1 DA 11 C DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B O4 DT 8 B DT 8 1_555 C N6 DA 11 C DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N3 DT 9 B DT 9 1_555 C N1 DA 10 C DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B O4 DT 9 B DT 9 1_555 C N6 DA 10 C DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N3 DC 10 B DC 10 1_555 C N1 DG 9 C DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N4 DC 10 B DC 10 1_555 C O6 DG 9 C DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B O2 DC 10 B DC 10 1_555 C N2 DG 9 C DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N1 DG 11 B DG 11 1_555 C N3 DC 8 C DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N2 DG 11 B DG 11 1_555 C O2 DC 8 C DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B O6 DG 11 B DG 11 1_555 C N4 DC 8 C DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N1 DG 12 B DG 12 1_555 C N3 DC 7 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N2 DG 12 B DG 12 1_555 C O2 DC 7 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B O6 DG 12 B DG 12 1_555 C N4 DC 7 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B N3 DC 13 B DC 13 1_555 C N1 DG 6 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N4 DC 13 B DC 13 1_555 C O6 DG 6 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B O2 DC 13 B DC 13 1_555 C N2 DG 6 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B N1 DA 14 B DA 14 1_555 C N3 DT 5 C DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 B N6 DA 14 B DA 14 1_555 C O4 DT 5 C DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DT PAIR' hydrog30 B N1 DA 15 B DA 15 1_555 C N3 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog31 B N3 DT 16 B DT 16 1_555 C N1 DA 3 C DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6CTA _atom_sites.fract_transf_matrix[1][1] 0.010022 _atom_sites.fract_transf_matrix[1][2] 0.005786 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011572 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004224 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN A 1 601 1 ZN ZN . E 5 MG A 1 602 1 MG MG . F 5 MG A 1 603 2 MG MG . G 6 ATP A 1 604 1 ATP ATP . H 7 HOH A 1 701 15 HOH HOH . H 7 HOH A 2 702 5 HOH HOH . H 7 HOH A 3 703 2 HOH HOH . H 7 HOH A 4 704 4 HOH HOH . H 7 HOH A 5 705 3 HOH HOH . H 7 HOH A 6 706 1 HOH HOH . H 7 HOH A 7 707 8 HOH HOH . H 7 HOH A 8 708 6 HOH HOH . H 7 HOH A 9 709 11 HOH HOH . H 7 HOH A 10 710 9 HOH HOH . H 7 HOH A 11 711 16 HOH HOH . H 7 HOH A 12 712 18 HOH HOH . H 7 HOH A 13 713 10 HOH HOH . H 7 HOH A 14 714 7 HOH HOH . H 7 HOH A 15 715 21 HOH HOH . H 7 HOH A 16 716 14 HOH HOH . H 7 HOH A 17 717 20 HOH HOH . H 7 HOH A 18 718 19 HOH HOH . H 7 HOH A 19 719 13 HOH HOH . H 7 HOH A 20 720 17 HOH HOH . H 7 HOH A 21 721 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . G 6 25.038 -33.773 -5.541 1 60.11 ? PG ATP 604 A 1 HETATM 2 O O1G ATP . . . G 6 25.943 -33.917 -6.741 1 58.15 ? O1G ATP 604 A 1 HETATM 3 O O2G ATP . . . G 6 23.631 -34.271 -5.772 1 58.99 -1 O2G ATP 604 A 1 HETATM 4 O O3G ATP . . . G 6 25.122 -32.43 -4.852 1 51.3 ? O3G ATP 604 A 1 HETATM 5 P PB ATP . . . G 6 24.885 -36.212 -4.18 1 62.93 ? PB ATP 604 A 1 HETATM 6 O O1B ATP . . . G 6 25.798 -37.076 -3.339 1 61.7 -1 O1B ATP 604 A 1 HETATM 7 O O2B ATP . . . G 6 23.498 -35.884 -3.688 1 59.74 ? O2B ATP 604 A 1 HETATM 8 O O3B ATP . . . G 6 25.646 -34.823 -4.48 1 63.12 ? O3B ATP 604 A 1 HETATM 9 P PA ATP . . . G 6 23.653 -37.931 -6.092 1 64.86 ? PA ATP 604 A 1 HETATM 10 O O1A ATP . . . G 6 22.297 -37.266 -6.047 1 64.81 -1 O1A ATP 604 A 1 HETATM 11 O O2A ATP . . . G 6 24.143 -38.592 -7.359 1 64.79 ? O2A ATP 604 A 1 HETATM 12 O O3A ATP . . . G 6 24.764 -36.842 -5.66 1 63.19 ? O3A ATP 604 A 1 HETATM 13 O O5' ATP . . . G 6 23.716 -39.055 -4.94 1 58.63 ? O5' ATP 604 A 1 HETATM 14 C C5' ATP . . . G 6 22.823 -39.038 -3.83 1 54.93 ? C5' ATP 604 A 1 HETATM 15 C C4' ATP . . . G 6 23.204 -40.163 -2.88 1 53.4 ? C4' ATP 604 A 1 HETATM 16 O O4' ATP . . . G 6 23.053 -41.434 -3.518 1 53.46 ? O4' ATP 604 A 1 HETATM 17 C C3' ATP . . . G 6 24.661 -40.077 -2.464 1 51.63 ? C3' ATP 604 A 1 HETATM 18 O O3' ATP . . . G 6 24.812 -39.343 -1.247 1 53.47 ? O3' ATP 604 A 1 HETATM 19 C C2' ATP . . . G 6 25.078 -41.52 -2.285 1 50.76 ? C2' ATP 604 A 1 HETATM 20 O O2' ATP . . . G 6 24.913 -41.896 -0.916 1 46.53 ? O2' ATP 604 A 1 HETATM 21 C C1' ATP . . . G 6 24.114 -42.318 -3.144 1 50.47 ? C1' ATP 604 A 1 HETATM 22 N N9 ATP . . . G 6 24.832 -42.749 -4.366 1 54.67 ? N9 ATP 604 A 1 HETATM 23 C C8 ATP . . . G 6 24.881 -42.064 -5.525 1 52.49 ? C8 ATP 604 A 1 HETATM 24 N N7 ATP . . . G 6 25.621 -42.717 -6.454 1 49.81 ? N7 ATP 604 A 1 HETATM 25 C C5 ATP . . . G 6 26.065 -43.852 -5.883 1 50.54 ? C5 ATP 604 A 1 HETATM 26 C C6 ATP . . . G 6 26.899 -45 -6.305 1 52.92 ? C6 ATP 604 A 1 HETATM 27 N N6 ATP . . . G 6 27.419 -45.062 -7.555 1 56.91 ? N6 ATP 604 A 1 HETATM 28 N N1 ATP . . . G 6 27.122 -45.979 -5.402 1 56.33 ? N1 ATP 604 A 1 HETATM 29 C C2 ATP . . . G 6 26.613 -45.927 -4.157 1 55.6 ? C2 ATP 604 A 1 HETATM 30 N N3 ATP . . . G 6 25.848 -44.918 -3.707 1 51.53 ? N3 ATP 604 A 1 HETATM 31 C C4 ATP . . . G 6 25.544 -43.87 -4.508 1 52.22 ? C4 ATP 604 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #