data_6CVN # _model_server_result.job_id WS65RUm4OkE2AvTXtNoaZA _model_server_result.datetime_utc '2024-11-19 07:22:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cvn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":502}' # _entry.id 6CVN # _exptl.entry_id 6CVN _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 24.305 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 120-meric 120 'representative helical assembly' 1 ? tetrameric 4 'helical asymmetric unit' 2 ? tetrameric 4 'helical asymmetric unit, std helical frame' 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 (1-30) A,B,C,D,E,F,G,H 2 16 A,B,C,D,E,F,G,H 3 H # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] H 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'helical symmetry operation' ? ? 0.896873 -0.442289 0 0.442289 0.896873 0 0 0 1 155.44355 -96.66101 -130.5 3 'helical symmetry operation' ? ? 0.999962 -0.008727 0 0.008727 0.999962 0 0 0 1 2.49791 -2.47621 -121.8 4 'helical symmetry operation' ? ? 0.904455 0.426569 0 -0.426569 0.904455 0 0 0 1 -94.34181 148.80237 -113.1 5 'helical symmetry operation' ? ? 0.62932 0.777146 0 -0.777146 0.62932 0 0 0 1 -115.84291 327.13029 -104.4 6 'helical symmetry operation' ? ? 0.2292 0.973379 0 -0.973379 0.2292 0 0 0 1 -57.7352 497.09098 -95.7 7 'helical symmetry operation' ? ? -0.21644 0.976296 0 -0.976296 -0.21644 0 0 0 1 68.44093 624.92965 -87 8 'helical symmetry operation' ? ? -0.619094 0.785317 0 -0.785317 -0.619094 0 0 0 1 237.62645 685.2571 -78.3 9 'helical symmetry operation' ? ? -0.898794 0.438371 0 -0.438371 -0.898794 0 0 0 1 416.22053 666.09208 -69.6 10 'helical symmetry operation' ? ? -0.99999 0.004363 0 -0.004363 -0.99999 0 0 0 1 568.75374 571.24083 -60.9 11 'helical symmetry operation' ? ? -0.902585 -0.430511 0 0.430511 -0.902585 0 0 0 1 664.93247 419.54114 -52.2 12 'helical symmetry operation' ? ? -0.625923 -0.779884 0 0.779884 -0.625923 0 0 0 1 685.65527 241.12111 -43.5 13 'helical symmetry operation' ? ? -0.224951 -0.97437 0 0.97437 -0.224951 0 0 0 1 626.80652 71.41558 -34.8 14 'helical symmetry operation' ? ? 0.220697 -0.975342 0 0.975342 0.220697 0 0 0 1 500.07379 -55.87133 -26.1 15 'helical symmetry operation' ? ? 0.622515 -0.782608 0 0.782608 0.622515 0 0 0 1 330.62665 -115.46 -17.4 16 'helical symmetry operation' ? ? 0.900698 -0.434445 0 0.434445 0.900698 0 0 0 1 152.1179 -95.5159 -8.7 17 'helical symmetry operation' ? ? 0.900698 0.434445 0 -0.434445 0.900698 0 0 0 1 -95.5159 152.1179 8.7 18 'helical symmetry operation' ? ? 0.622515 0.782608 0 -0.782608 0.622515 0 0 0 1 -115.46 330.62665 17.4 19 'helical symmetry operation' ? ? 0.220697 0.975342 0 -0.975342 0.220697 0 0 0 1 -55.87133 500.07379 26.1 20 'helical symmetry operation' ? ? -0.224951 0.97437 0 -0.97437 -0.224951 0 0 0 1 71.41558 626.80652 34.8 21 'helical symmetry operation' ? ? -0.625923 0.779884 0 -0.779884 -0.625923 0 0 0 1 241.12111 685.65527 43.5 22 'helical symmetry operation' ? ? -0.902585 0.430511 0 -0.430511 -0.902585 0 0 0 1 419.54114 664.93247 52.2 23 'helical symmetry operation' ? ? -0.99999 -0.004363 0 0.004363 -0.99999 0 0 0 1 571.24083 568.75374 60.9 24 'helical symmetry operation' ? ? -0.898794 -0.438371 0 0.438371 -0.898794 0 0 0 1 666.09208 416.22053 69.6 25 'helical symmetry operation' ? ? -0.619094 -0.785317 0 0.785317 -0.619094 0 0 0 1 685.2571 237.62645 78.3 26 'helical symmetry operation' ? ? -0.21644 -0.976296 0 0.976296 -0.21644 0 0 0 1 624.92965 68.44093 87 27 'helical symmetry operation' ? ? 0.2292 -0.973379 0 0.973379 0.2292 0 0 0 1 497.09098 -57.7352 95.7 28 'helical symmetry operation' ? ? 0.62932 -0.777146 0 0.777146 0.62932 0 0 0 1 327.13029 -115.84291 104.4 29 'helical symmetry operation' ? ? 0.904455 -0.426569 0 0.426569 0.904455 0 0 0 1 148.80237 -94.34181 113.1 30 'helical symmetry operation' ? ? 0.999962 0.008727 0 -0.008727 0.999962 0 0 0 1 -2.47621 2.49791 121.8 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F O1G GTP . B GTP 501 1_555 G MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc2 F O1B GTP . B GTP 501 1_555 G MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6CVN _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 GDP A 1 501 4 GDP GDP . F 5 GTP B 1 501 1 GTP GTP . G 6 MG B 1 502 2 MG MG . H 4 GDP C 1 501 3 GDP GDP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 6 _atom_site.Cartn_x 250.878 _atom_site.Cartn_y 396.227 _atom_site.Cartn_z 235.149 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.1 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 502 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #