data_6CVX # _model_server_result.job_id GXpLqM8sH7mC0B_2Vy66vg _model_server_result.datetime_utc '2024-11-05 21:27:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cvx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1205}' # _entry.id 6CVX # _exptl.entry_id 6CVX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CVX _cell.length_a 55.286 _cell.length_b 58.506 _cell.length_c 59.798 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CVX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 118 A CYS 1097 1_555 E ZN ZN . A ZN 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc2 A SG CYS 120 A CYS 1099 1_555 E ZN ZN . A ZN 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc3 A SG CYS 166 A CYS 1145 1_555 E ZN ZN . A ZN 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc4 A ND1 HIS 170 A HIS 1149 1_555 E ZN ZN . A ZN 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 243 n n C1 C2 GOL sing 244 n n C1 H11 GOL sing 245 n n C1 H12 GOL sing 246 n n O1 HO1 GOL sing 247 n n C2 O2 GOL sing 248 n n C2 C3 GOL sing 249 n n C2 H2 GOL sing 250 n n O2 HO2 GOL sing 251 n n C3 O3 GOL sing 252 n n C3 H31 GOL sing 253 n n C3 H32 GOL sing 254 n n O3 HO3 GOL sing 255 n n # _atom_sites.entry_id 6CVX _atom_sites.fract_transf_matrix[1][1] 0.018088 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017092 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016723 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FH4 A 1 1201 1 FH4 LIG . C 3 SO4 A 1 1202 1 SO4 SO4 . D 3 SO4 A 1 1203 2 SO4 SO4 . E 4 ZN A 1 1204 1 ZN ZN . F 5 GOL A 1 1205 1 GOL GOL . G 6 HOH A 1 1301 142 HOH HOH . G 6 HOH A 2 1302 250 HOH HOH . G 6 HOH A 3 1303 215 HOH HOH . G 6 HOH A 4 1304 118 HOH HOH . G 6 HOH A 5 1305 240 HOH HOH . G 6 HOH A 6 1306 76 HOH HOH . G 6 HOH A 7 1307 126 HOH HOH . G 6 HOH A 8 1308 264 HOH HOH . G 6 HOH A 9 1309 179 HOH HOH . G 6 HOH A 10 1310 23 HOH HOH . G 6 HOH A 11 1311 176 HOH HOH . G 6 HOH A 12 1312 188 HOH HOH . G 6 HOH A 13 1313 94 HOH HOH . G 6 HOH A 14 1314 212 HOH HOH . G 6 HOH A 15 1315 68 HOH HOH . G 6 HOH A 16 1316 171 HOH HOH . G 6 HOH A 17 1317 113 HOH HOH . G 6 HOH A 18 1318 270 HOH HOH . G 6 HOH A 19 1319 100 HOH HOH . G 6 HOH A 20 1320 173 HOH HOH . G 6 HOH A 21 1321 41 HOH HOH . G 6 HOH A 22 1322 131 HOH HOH . G 6 HOH A 23 1323 209 HOH HOH . G 6 HOH A 24 1324 74 HOH HOH . G 6 HOH A 25 1325 111 HOH HOH . G 6 HOH A 26 1326 50 HOH HOH . G 6 HOH A 27 1327 27 HOH HOH . G 6 HOH A 28 1328 42 HOH HOH . G 6 HOH A 29 1329 174 HOH HOH . G 6 HOH A 30 1330 249 HOH HOH . G 6 HOH A 31 1331 97 HOH HOH . G 6 HOH A 32 1332 38 HOH HOH . G 6 HOH A 33 1333 88 HOH HOH . G 6 HOH A 34 1334 11 HOH HOH . G 6 HOH A 35 1335 141 HOH HOH . G 6 HOH A 36 1336 255 HOH HOH . G 6 HOH A 37 1337 121 HOH HOH . G 6 HOH A 38 1338 248 HOH HOH . G 6 HOH A 39 1339 44 HOH HOH . G 6 HOH A 40 1340 14 HOH HOH . G 6 HOH A 41 1341 230 HOH HOH . G 6 HOH A 42 1342 177 HOH HOH . G 6 HOH A 43 1343 275 HOH HOH . G 6 HOH A 44 1344 136 HOH HOH . G 6 HOH A 45 1345 39 HOH HOH . G 6 HOH A 46 1346 169 HOH HOH . G 6 HOH A 47 1347 184 HOH HOH . G 6 HOH A 48 1348 2 HOH HOH . G 6 HOH A 49 1349 63 HOH HOH . G 6 HOH A 50 1350 112 HOH HOH . G 6 HOH A 51 1351 101 HOH HOH . G 6 HOH A 52 1352 104 HOH HOH . G 6 HOH A 53 1353 202 HOH HOH . G 6 HOH A 54 1354 66 HOH HOH . G 6 HOH A 55 1355 33 HOH HOH . G 6 HOH A 56 1356 60 HOH HOH . G 6 HOH A 57 1357 9 HOH HOH . G 6 HOH A 58 1358 4 HOH HOH . G 6 HOH A 59 1359 21 HOH HOH . G 6 HOH A 60 1360 17 HOH HOH . G 6 HOH A 61 1361 98 HOH HOH . G 6 HOH A 62 1362 7 HOH HOH . G 6 HOH A 63 1363 122 HOH HOH . G 6 HOH A 64 1364 46 HOH HOH . G 6 HOH A 65 1365 18 HOH HOH . G 6 HOH A 66 1366 34 HOH HOH . G 6 HOH A 67 1367 133 HOH HOH . G 6 HOH A 68 1368 144 HOH HOH . G 6 HOH A 69 1369 192 HOH HOH . G 6 HOH A 70 1370 117 HOH HOH . G 6 HOH A 71 1371 12 HOH HOH . G 6 HOH A 72 1372 19 HOH HOH . G 6 HOH A 73 1373 242 HOH HOH . G 6 HOH A 74 1374 55 HOH HOH . G 6 HOH A 75 1375 262 HOH HOH . G 6 HOH A 76 1376 154 HOH HOH . G 6 HOH A 77 1377 195 HOH HOH . G 6 HOH A 78 1378 272 HOH HOH . G 6 HOH A 79 1379 93 HOH HOH . G 6 HOH A 80 1380 102 HOH HOH . G 6 HOH A 81 1381 75 HOH HOH . G 6 HOH A 82 1382 220 HOH HOH . G 6 HOH A 83 1383 245 HOH HOH . G 6 HOH A 84 1384 45 HOH HOH . G 6 HOH A 85 1385 257 HOH HOH . G 6 HOH A 86 1386 172 HOH HOH . G 6 HOH A 87 1387 198 HOH HOH . G 6 HOH A 88 1388 57 HOH HOH . G 6 HOH A 89 1389 129 HOH HOH . G 6 HOH A 90 1390 149 HOH HOH . G 6 HOH A 91 1391 221 HOH HOH . G 6 HOH A 92 1392 67 HOH HOH . G 6 HOH A 93 1393 151 HOH HOH . G 6 HOH A 94 1394 124 HOH HOH . G 6 HOH A 95 1395 32 HOH HOH . G 6 HOH A 96 1396 135 HOH HOH . G 6 HOH A 97 1397 13 HOH HOH . G 6 HOH A 98 1398 190 HOH HOH . G 6 HOH A 99 1399 103 HOH HOH . G 6 HOH A 100 1400 239 HOH HOH . G 6 HOH A 101 1401 225 HOH HOH . G 6 HOH A 102 1402 90 HOH HOH . G 6 HOH A 103 1403 35 HOH HOH . G 6 HOH A 104 1404 48 HOH HOH . G 6 HOH A 105 1405 72 HOH HOH . G 6 HOH A 106 1406 25 HOH HOH . G 6 HOH A 107 1407 217 HOH HOH . G 6 HOH A 108 1408 150 HOH HOH . G 6 HOH A 109 1409 26 HOH HOH . G 6 HOH A 110 1410 204 HOH HOH . G 6 HOH A 111 1411 201 HOH HOH . G 6 HOH A 112 1412 197 HOH HOH . G 6 HOH A 113 1413 147 HOH HOH . G 6 HOH A 114 1414 106 HOH HOH . G 6 HOH A 115 1415 143 HOH HOH . G 6 HOH A 116 1416 134 HOH HOH . G 6 HOH A 117 1417 73 HOH HOH . G 6 HOH A 118 1418 167 HOH HOH . G 6 HOH A 119 1419 194 HOH HOH . G 6 HOH A 120 1420 47 HOH HOH . G 6 HOH A 121 1421 40 HOH HOH . G 6 HOH A 122 1422 10 HOH HOH . G 6 HOH A 123 1423 29 HOH HOH . G 6 HOH A 124 1424 193 HOH HOH . G 6 HOH A 125 1425 145 HOH HOH . G 6 HOH A 126 1426 238 HOH HOH . G 6 HOH A 127 1427 259 HOH HOH . G 6 HOH A 128 1428 62 HOH HOH . G 6 HOH A 129 1429 268 HOH HOH . G 6 HOH A 130 1430 51 HOH HOH . G 6 HOH A 131 1431 81 HOH HOH . G 6 HOH A 132 1432 86 HOH HOH . G 6 HOH A 133 1433 37 HOH HOH . G 6 HOH A 134 1434 82 HOH HOH . G 6 HOH A 135 1435 251 HOH HOH . G 6 HOH A 136 1436 178 HOH HOH . G 6 HOH A 137 1437 185 HOH HOH . G 6 HOH A 138 1438 78 HOH HOH . G 6 HOH A 139 1439 64 HOH HOH . G 6 HOH A 140 1440 110 HOH HOH . G 6 HOH A 141 1441 180 HOH HOH . G 6 HOH A 142 1442 199 HOH HOH . G 6 HOH A 143 1443 108 HOH HOH . G 6 HOH A 144 1444 267 HOH HOH . G 6 HOH A 145 1445 243 HOH HOH . G 6 HOH A 146 1446 119 HOH HOH . G 6 HOH A 147 1447 49 HOH HOH . G 6 HOH A 148 1448 109 HOH HOH . G 6 HOH A 149 1449 233 HOH HOH . G 6 HOH A 150 1450 53 HOH HOH . G 6 HOH A 151 1451 130 HOH HOH . G 6 HOH A 152 1452 254 HOH HOH . G 6 HOH A 153 1453 175 HOH HOH . G 6 HOH A 154 1454 263 HOH HOH . G 6 HOH A 155 1455 152 HOH HOH . G 6 HOH A 156 1456 227 HOH HOH . G 6 HOH A 157 1457 162 HOH HOH . G 6 HOH A 158 1458 191 HOH HOH . G 6 HOH A 159 1459 224 HOH HOH . G 6 HOH A 160 1460 273 HOH HOH . G 6 HOH A 161 1461 265 HOH HOH . G 6 HOH A 162 1462 186 HOH HOH . G 6 HOH A 163 1463 216 HOH HOH . G 6 HOH A 164 1464 166 HOH HOH . G 6 HOH A 165 1465 155 HOH HOH . G 6 HOH A 166 1466 256 HOH HOH . G 6 HOH A 167 1467 208 HOH HOH . G 6 HOH A 168 1468 232 HOH HOH . G 6 HOH A 169 1469 219 HOH HOH . G 6 HOH A 170 1470 164 HOH HOH . G 6 HOH A 171 1471 229 HOH HOH . G 6 HOH A 172 1472 237 HOH HOH . G 6 HOH A 173 1473 258 HOH HOH . G 6 HOH A 174 1474 140 HOH HOH . G 6 HOH A 175 1475 253 HOH HOH . G 6 HOH A 176 1476 218 HOH HOH . G 6 HOH A 177 1477 228 HOH HOH . G 6 HOH A 178 1478 271 HOH HOH . G 6 HOH A 179 1479 183 HOH HOH . G 6 HOH A 180 1480 235 HOH HOH . G 6 HOH A 181 1481 123 HOH HOH . G 6 HOH A 182 1482 105 HOH HOH . G 6 HOH A 183 1483 203 HOH HOH . G 6 HOH A 184 1484 274 HOH HOH . G 6 HOH A 185 1485 125 HOH HOH . G 6 HOH A 186 1486 137 HOH HOH . G 6 HOH A 187 1487 277 HOH HOH . G 6 HOH A 188 1488 196 HOH HOH . G 6 HOH A 189 1489 182 HOH HOH . G 6 HOH A 190 1490 95 HOH HOH . G 6 HOH A 191 1491 200 HOH HOH . G 6 HOH A 192 1492 139 HOH HOH . G 6 HOH A 193 1493 244 HOH HOH . G 6 HOH A 194 1494 205 HOH HOH . G 6 HOH A 195 1495 214 HOH HOH . G 6 HOH A 196 1496 211 HOH HOH . G 6 HOH A 197 1497 269 HOH HOH . G 6 HOH A 198 1498 266 HOH HOH . G 6 HOH A 199 1499 168 HOH HOH . G 6 HOH A 200 1500 70 HOH HOH . G 6 HOH A 201 1501 77 HOH HOH . G 6 HOH A 202 1502 127 HOH HOH . G 6 HOH A 203 1503 20 HOH HOH . G 6 HOH A 204 1504 276 HOH HOH . G 6 HOH A 205 1505 114 HOH HOH . G 6 HOH A 206 1506 107 HOH HOH . G 6 HOH A 207 1507 84 HOH HOH . G 6 HOH A 208 1508 261 HOH HOH . G 6 HOH A 209 1509 213 HOH HOH . G 6 HOH A 210 1510 260 HOH HOH . G 6 HOH A 211 1511 247 HOH HOH . G 6 HOH A 212 1512 128 HOH HOH . G 6 HOH A 213 1513 146 HOH HOH . G 6 HOH A 214 1514 210 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 -23.441 -14.43 24.458 1 25.77 ? C1 GOL 1205 A 1 HETATM 2 O O1 GOL . . . F 5 -24.754 -14.767 24.097 1 27.25 ? O1 GOL 1205 A 1 HETATM 3 C C2 GOL . . . F 5 -22.774 -15.734 24.956 1 22.63 ? C2 GOL 1205 A 1 HETATM 4 O O2 GOL . . . F 5 -22.616 -16.64 23.953 1 32.74 ? O2 GOL 1205 A 1 HETATM 5 C C3 GOL . . . F 5 -21.44 -15.326 25.589 1 21.25 ? C3 GOL 1205 A 1 HETATM 6 O O3 GOL . . . F 5 -20.865 -16.497 26.091 1 20.83 ? O3 GOL 1205 A 1 HETATM 7 H H11 GOL . . . F 5 -22.93 -14.068 23.718 1 30.94 ? H11 GOL 1205 A 1 HETATM 8 H H12 GOL . . . F 5 -23.405 -13.76 25.159 1 30.94 ? H12 GOL 1205 A 1 HETATM 9 H HO1 GOL . . . F 5 -24.732 -15.573 23.827 1 32.71 ? HO1 GOL 1205 A 1 HETATM 10 H H2 GOL . . . F 5 -23.34 -16.156 25.622 1 27.17 ? H2 GOL 1205 A 1 HETATM 11 H HO2 GOL . . . F 5 -22.003 -17.181 24.184 1 39.31 ? HO2 GOL 1205 A 1 HETATM 12 H H31 GOL . . . F 5 -20.894 -14.884 24.92 1 25.52 ? H31 GOL 1205 A 1 HETATM 13 H H32 GOL . . . F 5 -21.604 -14.654 26.269 1 25.52 ? H32 GOL 1205 A 1 HETATM 14 H HO3 GOL . . . F 5 -20.348 -16.264 26.724 1 25.02 ? HO3 GOL 1205 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 213 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #