data_6CW6 # _model_server_result.job_id NolndhxyI8MBDSx2z5_wiQ _model_server_result.datetime_utc '2024-11-23 11:35:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cw6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":307}' # _entry.id 6CW6 # _exptl.entry_id 6CW6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CW6 _cell.length_a 78.641 _cell.length_b 190.354 _cell.length_c 150.785 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CW6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E NAG 1 E 1 NAG A 511 NAG 5 n E NAG 2 E 2 NAG A 512 NAG 5 n E FUC 3 E 3 FUC A 513 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 A CYS 104 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 A SG CYS 208 A CYS 208 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 C SG CYS 24 C CYS 23 1_555 C SG CYS 91 C CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf5 C SG CYS 138 C CYS 137 1_555 C SG CYS 188 C CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 C SG CYS 163 C CYS 162 1_555 D SG CYS 169 D CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf7 D SG CYS 24 D CYS 23 1_555 D SG CYS 92 D CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf8 D SG CYS 143 D CYS 142 1_555 D SG CYS 208 D CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? covale ? covale1 A ND2 ASN 20 A ASN 20 1_555 F C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale2 A ND2 ASN 42 A ASN 42 1_555 G C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale3 A ND2 ASN 165 A ASN 165 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale4 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 E O6 NAG . E NAG 1 1_555 E C1 FUC . E FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 416 n n C1 O2 PLM doub 417 n n C1 C2 PLM sing 418 n n O1 H PLM sing 419 n n C2 C3 PLM sing 420 n n C2 H21 PLM sing 421 n n C2 H22 PLM sing 422 n n C3 C4 PLM sing 423 n n C3 H31 PLM sing 424 n n C3 H32 PLM sing 425 n n C4 C5 PLM sing 426 n n C4 H41 PLM sing 427 n n C4 H42 PLM sing 428 n n C5 C6 PLM sing 429 n n C5 H51 PLM sing 430 n n C5 H52 PLM sing 431 n n C6 C7 PLM sing 432 n n C6 H61 PLM sing 433 n n C6 H62 PLM sing 434 n n C7 C8 PLM sing 435 n n C7 H71 PLM sing 436 n n C7 H72 PLM sing 437 n n C8 C9 PLM sing 438 n n C8 H81 PLM sing 439 n n C8 H82 PLM sing 440 n n C9 CA PLM sing 441 n n C9 H91 PLM sing 442 n n C9 H92 PLM sing 443 n n CA CB PLM sing 444 n n CA HA1 PLM sing 445 n n CA HA2 PLM sing 446 n n CB CC PLM sing 447 n n CB HB1 PLM sing 448 n n CB HB2 PLM sing 449 n n CC CD PLM sing 450 n n CC HC1 PLM sing 451 n n CC HC2 PLM sing 452 n n CD CE PLM sing 453 n n CD HD1 PLM sing 454 n n CD HD2 PLM sing 455 n n CE CF PLM sing 456 n n CE HE1 PLM sing 457 n n CE HE2 PLM sing 458 n n CF CG PLM sing 459 n n CF HF1 PLM sing 460 n n CF HF2 PLM sing 461 n n CG HG1 PLM sing 462 n n CG HG2 PLM sing 463 n n CG HG3 PLM sing 464 n n # _atom_sites.entry_id 6CW6 _atom_sites.fract_transf_matrix[1][1] 0.012716 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005253 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006632 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 NAG A 1 301 500 NAG NAG . G 6 NAG A 1 302 501 NAG NAG . H 7 PBS A 1 306 501 PBS PBS . I 8 PLM A 1 307 502 PLM PLM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . I 8 -43.139 -21.352 21.084 1 61.39 ? C1 PLM 307 A 1 HETATM 2 O O1 PLM . . . I 8 -42.786 -22.556 21.224 1 62.69 ? O1 PLM 307 A 1 HETATM 3 O O2 PLM . . . I 8 -43.062 -20.642 20.041 1 61.83 ? O2 PLM 307 A 1 HETATM 4 C C2 PLM . . . I 8 -43.788 -20.711 22.303 1 57.77 ? C2 PLM 307 A 1 HETATM 5 C C3 PLM . . . I 8 -42.928 -19.601 22.891 1 55.03 ? C3 PLM 307 A 1 HETATM 6 C C4 PLM . . . I 8 -43.645 -19.371 24.191 1 54.17 ? C4 PLM 307 A 1 HETATM 7 C C5 PLM . . . I 8 -43.034 -18.151 24.893 1 53.26 ? C5 PLM 307 A 1 HETATM 8 C C6 PLM . . . I 8 -44.237 -17.255 25.161 1 53.31 ? C6 PLM 307 A 1 HETATM 9 C C7 PLM . . . I 8 -43.772 -16.013 25.92 1 51.73 ? C7 PLM 307 A 1 HETATM 10 C C8 PLM . . . I 8 -44.309 -14.741 25.232 1 51.46 ? C8 PLM 307 A 1 HETATM 11 C C9 PLM . . . I 8 -45.797 -14.683 25.573 1 50.46 ? C9 PLM 307 A 1 HETATM 12 C CA PLM . . . I 8 -46.545 -13.718 24.646 1 49.57 ? CA PLM 307 A 1 HETATM 13 C CB PLM . . . I 8 -47.205 -14.627 23.572 1 49.87 ? CB PLM 307 A 1 HETATM 14 C CC PLM . . . I 8 -47.934 -13.71 22.569 1 48.53 ? CC PLM 307 A 1 HETATM 15 C CD PLM . . . I 8 -47.214 -13.823 21.205 1 48.11 ? CD PLM 307 A 1 HETATM 16 C CE PLM . . . I 8 -48.132 -14.692 20.333 1 48.68 ? CE PLM 307 A 1 HETATM 17 C CF PLM . . . I 8 -47.352 -15.073 19.075 1 48.69 ? CF PLM 307 A 1 HETATM 18 C CG PLM . . . I 8 -46.615 -16.416 19.319 1 47.83 ? CG PLM 307 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 18 #