data_6CWB # _model_server_result.job_id KTgMK01DIY_aUt7pbffr4Q _model_server_result.datetime_utc '2024-11-07 22:49:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cwb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":306}' # _entry.id 6CWB # _exptl.entry_id 6CWB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CWB _cell.length_a 78.31 _cell.length_b 190.269 _cell.length_c 151.018 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CWB _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E NAG 1 E 1 NAG A 310 NAG 5 n E NAG 2 E 2 NAG A 311 NAG 5 n E FUC 3 E 3 FUC A 315 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 A CYS 104 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf2 A SG CYS 208 A CYS 208 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 C SG CYS 24 C CYS 23 1_555 C SG CYS 91 C CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 C SG CYS 138 C CYS 137 1_555 C SG CYS 188 C CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf6 C SG CYS 163 C CYS 162 1_555 D SG CYS 169 D CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf7 D SG CYS 24 D CYS 23 1_555 D SG CYS 92 D CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf8 D SG CYS 143 D CYS 142 1_555 D SG CYS 208 D CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? covale ? covale1 A ND2 ASN 20 A ASN 20 1_555 F C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 42 A ASN 42 1_555 G C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale3 A ND2 ASN 165 A ASN 165 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale4 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 E O6 NAG . E NAG 1 1_555 E C1 FUC . E FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? metalc ? metalc1 D O ARG 37 D ARG 36 1_555 J NA NA . D NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc2 D O GLY 43 D GLY 42 1_555 J NA NA . D NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 408 n n C1 O2 PLM doub 409 n n C1 C2 PLM sing 410 n n O1 H PLM sing 411 n n C2 C3 PLM sing 412 n n C2 H21 PLM sing 413 n n C2 H22 PLM sing 414 n n C3 C4 PLM sing 415 n n C3 H31 PLM sing 416 n n C3 H32 PLM sing 417 n n C4 C5 PLM sing 418 n n C4 H41 PLM sing 419 n n C4 H42 PLM sing 420 n n C5 C6 PLM sing 421 n n C5 H51 PLM sing 422 n n C5 H52 PLM sing 423 n n C6 C7 PLM sing 424 n n C6 H61 PLM sing 425 n n C6 H62 PLM sing 426 n n C7 C8 PLM sing 427 n n C7 H71 PLM sing 428 n n C7 H72 PLM sing 429 n n C8 C9 PLM sing 430 n n C8 H81 PLM sing 431 n n C8 H82 PLM sing 432 n n C9 CA PLM sing 433 n n C9 H91 PLM sing 434 n n C9 H92 PLM sing 435 n n CA CB PLM sing 436 n n CA HA1 PLM sing 437 n n CA HA2 PLM sing 438 n n CB CC PLM sing 439 n n CB HB1 PLM sing 440 n n CB HB2 PLM sing 441 n n CC CD PLM sing 442 n n CC HC1 PLM sing 443 n n CC HC2 PLM sing 444 n n CD CE PLM sing 445 n n CD HD1 PLM sing 446 n n CD HD2 PLM sing 447 n n CE CF PLM sing 448 n n CE HE1 PLM sing 449 n n CE HE2 PLM sing 450 n n CF CG PLM sing 451 n n CF HF1 PLM sing 452 n n CF HF2 PLM sing 453 n n CG HG1 PLM sing 454 n n CG HG2 PLM sing 455 n n CG HG3 PLM sing 456 n n # _atom_sites.entry_id 6CWB _atom_sites.fract_transf_matrix[1][1] 0.01277 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005256 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006622 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 NAG A 1 301 300 NAG NAG . G 6 NAG A 1 302 301 NAG NAG . H 7 PLM A 1 306 502 PLM PLM . I 8 FJJ A 1 307 501 FJJ 172 . J 9 NA D 1 301 1 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . H 7 -42.696 -20.682 21.924 1 72.23 ? C1 PLM 306 A 1 HETATM 2 O O1 PLM . . . H 7 -42.421 -21.824 22.365 1 72.63 ? O1 PLM 306 A 1 HETATM 3 O O2 PLM . . . H 7 -42.451 -20.228 20.775 1 74.87 ? O2 PLM 306 A 1 HETATM 4 C C2 PLM . . . H 7 -43.464 -19.78 22.873 1 68.65 ? C2 PLM 306 A 1 HETATM 5 C C3 PLM . . . H 7 -42.568 -18.732 23.506 1 66.67 ? C3 PLM 306 A 1 HETATM 6 C C4 PLM . . . H 7 -43.18 -18.577 24.874 1 64.32 ? C4 PLM 306 A 1 HETATM 7 C C5 PLM . . . H 7 -42.809 -17.203 25.467 1 63.07 ? C5 PLM 306 A 1 HETATM 8 C C6 PLM . . . H 7 -44.044 -16.374 25.144 1 61.93 ? C6 PLM 306 A 1 HETATM 9 C C7 PLM . . . H 7 -43.845 -14.92 25.578 1 60.45 ? C7 PLM 306 A 1 HETATM 10 C C8 PLM . . . H 7 -45.21 -14.383 26.065 1 61.54 ? C8 PLM 306 A 1 HETATM 11 C C9 PLM . . . H 7 -46.08 -13.675 25.002 1 63.09 ? C9 PLM 306 A 1 HETATM 12 C CA PLM . . . H 7 -45.997 -14.379 23.672 1 65.59 ? CA PLM 306 A 1 HETATM 13 C CB PLM . . . H 7 -47.05 -13.795 22.718 1 65.12 ? CB PLM 306 A 1 HETATM 14 C CC PLM . . . H 7 -46.471 -14.207 21.362 1 66.45 ? CC PLM 306 A 1 HETATM 15 C CD PLM . . . H 7 -47.587 -14.368 20.349 1 67.23 ? CD PLM 306 A 1 HETATM 16 C CE PLM . . . H 7 -46.962 -15.07 19.138 1 66.06 ? CE PLM 306 A 1 HETATM 17 C CF PLM . . . H 7 -47.069 -16.601 19.313 1 64.69 ? CF PLM 306 A 1 HETATM 18 C CG PLM . . . H 7 -45.676 -17.229 19.499 1 63.89 ? CG PLM 306 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 473 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 18 #