data_6CWN # _model_server_result.job_id tdE0KmA0jZ_C5dwnZpdZew _model_server_result.datetime_utc '2024-11-28 13:33:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cwn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6CWN # _exptl.entry_id 6CWN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 305.281 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl 2-(acetylamino)-4,6-O-[(1S)-1-carboxyethylidene]-2-deoxy-beta-D-mannopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.74 _cell.angle_gamma 90 _cell.entry_id 6CWN _cell.length_a 93.383 _cell.length_b 36.254 _cell.length_c 56.896 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CWN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H19 N O8' _chem_comp.formula_weight 305.281 _chem_comp.id 6LA _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl 2-(acetylamino)-4,6-O-[(1S)-1-carboxyethylidene]-2-deoxy-beta-D-mannopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAK CAB 6LA sing 1 n n OAN CAL 6LA doub 2 n n O6 CAB 6LA sing 3 n n O6 C6 6LA sing 4 n n CAB CAL 6LA sing 5 n n CAB O4 6LA sing 6 n n CAL OAM 6LA sing 7 n n C6 C5 6LA sing 8 n n O4 C4 6LA sing 9 n n C5 C4 6LA sing 10 n n C5 O5 6LA sing 11 n n C4 C3 6LA sing 12 n n O5 C1 6LA sing 13 n n C3 O3 6LA sing 14 n n C3 C2 6LA sing 15 n n C1 C2 6LA sing 16 n n C1 O1 6LA sing 17 n n C2 N2 6LA sing 18 n n N2 C7 6LA sing 19 n n O1 CAU 6LA sing 20 n n C7 C8 6LA sing 21 n n C7 O7 6LA doub 22 n n C8 H1 6LA sing 23 n n C8 H2 6LA sing 24 n n C8 H3 6LA sing 25 n n N2 H4 6LA sing 26 n n C2 H5 6LA sing 27 n n C3 H6 6LA sing 28 n n O3 H7 6LA sing 29 n n C4 H8 6LA sing 30 n n CAK H9 6LA sing 31 n n CAK H10 6LA sing 32 n n CAK H11 6LA sing 33 n n OAM H12 6LA sing 34 n n C6 H13 6LA sing 35 n n C6 H14 6LA sing 36 n n C5 H15 6LA sing 37 n n C1 H16 6LA sing 38 n n CAU H17 6LA sing 39 n n CAU H18 6LA sing 40 n n CAU H19 6LA sing 41 n n # _atom_sites.entry_id 6CWN _atom_sites.fract_transf_matrix[1][1] 0.010709 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002618 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027583 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018094 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6LA A 1 301 1 6LA UNK . C 3 MPD A 1 302 1 MPD MPD . D 3 MPD A 1 303 2 MPD MPD . E 4 HOH A 1 401 155 HOH HOH . E 4 HOH A 2 402 93 HOH HOH . E 4 HOH A 3 403 84 HOH HOH . E 4 HOH A 4 404 158 HOH HOH . E 4 HOH A 5 405 136 HOH HOH . E 4 HOH A 6 406 18 HOH HOH . E 4 HOH A 7 407 89 HOH HOH . E 4 HOH A 8 408 137 HOH HOH . E 4 HOH A 9 409 130 HOH HOH . E 4 HOH A 10 410 162 HOH HOH . E 4 HOH A 11 411 172 HOH HOH . E 4 HOH A 12 412 7 HOH HOH . E 4 HOH A 13 413 34 HOH HOH . E 4 HOH A 14 414 27 HOH HOH . E 4 HOH A 15 415 40 HOH HOH . E 4 HOH A 16 416 129 HOH HOH . E 4 HOH A 17 417 70 HOH HOH . E 4 HOH A 18 418 79 HOH HOH . E 4 HOH A 19 419 8 HOH HOH . E 4 HOH A 20 420 166 HOH HOH . E 4 HOH A 21 421 126 HOH HOH . E 4 HOH A 22 422 104 HOH HOH . E 4 HOH A 23 423 168 HOH HOH . E 4 HOH A 24 424 62 HOH HOH . E 4 HOH A 25 425 156 HOH HOH . E 4 HOH A 26 426 100 HOH HOH . E 4 HOH A 27 427 26 HOH HOH . E 4 HOH A 28 428 101 HOH HOH . E 4 HOH A 29 429 75 HOH HOH . E 4 HOH A 30 430 123 HOH HOH . E 4 HOH A 31 431 2 HOH HOH . E 4 HOH A 32 432 117 HOH HOH . E 4 HOH A 33 433 3 HOH HOH . E 4 HOH A 34 434 91 HOH HOH . E 4 HOH A 35 435 150 HOH HOH . E 4 HOH A 36 436 143 HOH HOH . E 4 HOH A 37 437 1 HOH HOH . E 4 HOH A 38 438 132 HOH HOH . E 4 HOH A 39 439 23 HOH HOH . E 4 HOH A 40 440 52 HOH HOH . E 4 HOH A 41 441 39 HOH HOH . E 4 HOH A 42 442 14 HOH HOH . E 4 HOH A 43 443 74 HOH HOH . E 4 HOH A 44 444 32 HOH HOH . E 4 HOH A 45 445 147 HOH HOH . E 4 HOH A 46 446 65 HOH HOH . E 4 HOH A 47 447 68 HOH HOH . E 4 HOH A 48 448 15 HOH HOH . E 4 HOH A 49 449 24 HOH HOH . E 4 HOH A 50 450 21 HOH HOH . E 4 HOH A 51 451 47 HOH HOH . E 4 HOH A 52 452 78 HOH HOH . E 4 HOH A 53 453 103 HOH HOH . E 4 HOH A 54 454 35 HOH HOH . E 4 HOH A 55 455 11 HOH HOH . E 4 HOH A 56 456 57 HOH HOH . E 4 HOH A 57 457 29 HOH HOH . E 4 HOH A 58 458 69 HOH HOH . E 4 HOH A 59 459 20 HOH HOH . E 4 HOH A 60 460 60 HOH HOH . E 4 HOH A 61 461 135 HOH HOH . E 4 HOH A 62 462 6 HOH HOH . E 4 HOH A 63 463 37 HOH HOH . E 4 HOH A 64 464 118 HOH HOH . E 4 HOH A 65 465 141 HOH HOH . E 4 HOH A 66 466 95 HOH HOH . E 4 HOH A 67 467 90 HOH HOH . E 4 HOH A 68 468 54 HOH HOH . E 4 HOH A 69 469 159 HOH HOH . E 4 HOH A 70 470 108 HOH HOH . E 4 HOH A 71 471 86 HOH HOH . E 4 HOH A 72 472 55 HOH HOH . E 4 HOH A 73 473 51 HOH HOH . E 4 HOH A 74 474 43 HOH HOH . E 4 HOH A 75 475 16 HOH HOH . E 4 HOH A 76 476 152 HOH HOH . E 4 HOH A 77 477 36 HOH HOH . E 4 HOH A 78 478 46 HOH HOH . E 4 HOH A 79 479 44 HOH HOH . E 4 HOH A 80 480 53 HOH HOH . E 4 HOH A 81 481 164 HOH HOH . E 4 HOH A 82 482 48 HOH HOH . E 4 HOH A 83 483 45 HOH HOH . E 4 HOH A 84 484 109 HOH HOH . E 4 HOH A 85 485 77 HOH HOH . E 4 HOH A 86 486 92 HOH HOH . E 4 HOH A 87 487 72 HOH HOH . E 4 HOH A 88 488 19 HOH HOH . E 4 HOH A 89 489 107 HOH HOH . E 4 HOH A 90 490 12 HOH HOH . E 4 HOH A 91 491 125 HOH HOH . E 4 HOH A 92 492 149 HOH HOH . E 4 HOH A 93 493 80 HOH HOH . E 4 HOH A 94 494 31 HOH HOH . E 4 HOH A 95 495 73 HOH HOH . E 4 HOH A 96 496 38 HOH HOH . E 4 HOH A 97 497 106 HOH HOH . E 4 HOH A 98 498 165 HOH HOH . E 4 HOH A 99 499 81 HOH HOH . E 4 HOH A 100 500 113 HOH HOH . E 4 HOH A 101 501 41 HOH HOH . E 4 HOH A 102 502 131 HOH HOH . E 4 HOH A 103 503 9 HOH HOH . E 4 HOH A 104 504 66 HOH HOH . E 4 HOH A 105 505 28 HOH HOH . E 4 HOH A 106 506 124 HOH HOH . E 4 HOH A 107 507 110 HOH HOH . E 4 HOH A 108 508 56 HOH HOH . E 4 HOH A 109 509 49 HOH HOH . E 4 HOH A 110 510 99 HOH HOH . E 4 HOH A 111 511 42 HOH HOH . E 4 HOH A 112 512 173 HOH HOH . E 4 HOH A 113 513 116 HOH HOH . E 4 HOH A 114 514 50 HOH HOH . E 4 HOH A 115 515 5 HOH HOH . E 4 HOH A 116 516 58 HOH HOH . E 4 HOH A 117 517 59 HOH HOH . E 4 HOH A 118 518 13 HOH HOH . E 4 HOH A 119 519 112 HOH HOH . E 4 HOH A 120 520 10 HOH HOH . E 4 HOH A 121 521 96 HOH HOH . E 4 HOH A 122 522 83 HOH HOH . E 4 HOH A 123 523 22 HOH HOH . E 4 HOH A 124 524 63 HOH HOH . E 4 HOH A 125 525 17 HOH HOH . E 4 HOH A 126 526 142 HOH HOH . E 4 HOH A 127 527 76 HOH HOH . E 4 HOH A 128 528 154 HOH HOH . E 4 HOH A 129 529 98 HOH HOH . E 4 HOH A 130 530 71 HOH HOH . E 4 HOH A 131 531 102 HOH HOH . E 4 HOH A 132 532 145 HOH HOH . E 4 HOH A 133 533 114 HOH HOH . E 4 HOH A 134 534 133 HOH HOH . E 4 HOH A 135 535 146 HOH HOH . E 4 HOH A 136 536 157 HOH HOH . E 4 HOH A 137 537 160 HOH HOH . E 4 HOH A 138 538 4 HOH HOH . E 4 HOH A 139 539 97 HOH HOH . E 4 HOH A 140 540 88 HOH HOH . E 4 HOH A 141 541 120 HOH HOH . E 4 HOH A 142 542 61 HOH HOH . E 4 HOH A 143 543 167 HOH HOH . E 4 HOH A 144 544 175 HOH HOH . E 4 HOH A 145 545 163 HOH HOH . E 4 HOH A 146 546 170 HOH HOH . E 4 HOH A 147 547 115 HOH HOH . E 4 HOH A 148 548 174 HOH HOH . E 4 HOH A 149 549 138 HOH HOH . E 4 HOH A 150 550 119 HOH HOH . E 4 HOH A 151 551 139 HOH HOH . E 4 HOH A 152 552 153 HOH HOH . E 4 HOH A 153 553 85 HOH HOH . E 4 HOH A 154 554 30 HOH HOH . E 4 HOH A 155 555 82 HOH HOH . E 4 HOH A 156 556 140 HOH HOH . E 4 HOH A 157 557 148 HOH HOH . E 4 HOH A 158 558 128 HOH HOH . E 4 HOH A 159 559 33 HOH HOH . E 4 HOH A 160 560 122 HOH HOH . E 4 HOH A 161 561 64 HOH HOH . E 4 HOH A 162 562 105 HOH HOH . E 4 HOH A 163 563 121 HOH HOH . E 4 HOH A 164 564 111 HOH HOH . E 4 HOH A 165 565 67 HOH HOH . E 4 HOH A 166 566 94 HOH HOH . E 4 HOH A 167 567 169 HOH HOH . E 4 HOH A 168 568 134 HOH HOH . E 4 HOH A 169 569 127 HOH HOH . E 4 HOH A 170 570 176 HOH HOH . E 4 HOH A 171 571 171 HOH HOH . E 4 HOH A 172 572 161 HOH HOH . E 4 HOH A 173 573 151 HOH HOH . E 4 HOH A 174 574 87 HOH HOH . E 4 HOH A 175 575 25 HOH HOH . E 4 HOH A 176 576 144 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 6LA . . . B 2 -21.166 -12.4 17.376 1 19.9 ? C8 6LA 301 A 1 HETATM 2 C C7 6LA . . . B 2 -20.695 -12.304 15.929 1 18.93 ? C7 6LA 301 A 1 HETATM 3 O O7 6LA . . . B 2 -21.46 -12.572 15.017 1 26.14 ? O7 6LA 301 A 1 HETATM 4 N N2 6LA . . . B 2 -19.426 -12.003 15.775 1 16.5 ? N2 6LA 301 A 1 HETATM 5 C C2 6LA . . . B 2 -18.892 -11.879 14.459 1 15.61 ? C2 6LA 301 A 1 HETATM 6 C C3 6LA . . . B 2 -18.455 -10.447 14.145 1 12.76 ? C3 6LA 301 A 1 HETATM 7 O O3 6LA . . . B 2 -19.486 -9.486 14.262 1 16.81 ? O3 6LA 301 A 1 HETATM 8 C C4 6LA . . . B 2 -17.299 -10.076 15.092 1 12.41 ? C4 6LA 301 A 1 HETATM 9 O O4 6LA . . . B 2 -16.736 -8.806 14.719 1 11.55 ? O4 6LA 301 A 1 HETATM 10 C CAB 6LA . . . B 2 -15.694 -8.371 15.61 1 10.35 ? CAB 6LA 301 A 1 HETATM 11 C CAK 6LA . . . B 2 -15.128 -7.073 15.028 1 10.73 ? CAK 6LA 301 A 1 HETATM 12 C CAL 6LA . . . B 2 -16.312 -8.096 17.029 1 12.13 ? CAL 6LA 301 A 1 HETATM 13 O OAN 6LA . . . B 2 -17.4 -7.455 17.027 1 13.78 ? OAN 6LA 301 A 1 HETATM 14 O OAM 6LA . . . B 2 -15.643 -8.413 18.023 1 12.73 ? OAM 6LA 301 A 1 HETATM 15 O O6 6LA . . . B 2 -14.69 -9.354 15.655 1 11.37 ? O6 6LA 301 A 1 HETATM 16 C C6 6LA . . . B 2 -15.054 -10.691 15.937 1 10.66 ? C6 6LA 301 A 1 HETATM 17 C C5 6LA . . . B 2 -16.237 -11.071 14.979 1 11.56 ? C5 6LA 301 A 1 HETATM 18 O O5 6LA . . . B 2 -16.671 -12.374 15.286 1 12.88 ? O5 6LA 301 A 1 HETATM 19 C C1 6LA . . . B 2 -17.663 -12.759 14.341 1 15.82 ? C1 6LA 301 A 1 HETATM 20 O O1 6LA . . . B 2 -18.011 -14.069 14.552 1 18.1 ? O1 6LA 301 A 1 HETATM 21 C CAU 6LA . . . B 2 -17.009 -15.029 14.269 1 16.09 ? CAU 6LA 301 A 1 # _model_server_stats.io_time_ms 100 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 379 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 21 #