data_6CX5 # _model_server_result.job_id AGR-ZaDc1_mrTMwR-h_odg _model_server_result.datetime_utc '2024-11-24 00:12:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cx5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":309}' # _entry.id 6CX5 # _exptl.entry_id 6CX5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CX5 _cell.length_a 78.769 _cell.length_b 190.79 _cell.length_c 150.879 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CX5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 6 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E NAG 1 E 1 NAG A 301 NAG 5 n E NAG 2 E 2 NAG A 302 NAG 6 n F NAG 1 F 1 NAG A 310 NAG 6 n F NAG 2 F 2 NAG A 311 NAG 6 n F FUC 3 F 3 FUC A 315 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 A CYS 104 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? disulf ? disulf2 A SG CYS 208 A CYS 208 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf4 C SG CYS 24 C CYS 23 1_555 C SG CYS 91 C CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 C SG CYS 138 C CYS 137 1_555 C SG CYS 188 C CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf6 C SG CYS 163 C CYS 162 1_555 D SG CYS 169 D CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf7 D SG CYS 24 D CYS 23 1_555 D SG CYS 92 D CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf8 D SG CYS 143 D CYS 142 1_555 D SG CYS 208 D CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? covale ? covale1 A ND2 ASN 20 A ASN 20 1_555 G C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 42 A ASN 42 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 A ND2 ASN 165 A ASN 165 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale5 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale6 F O6 NAG . F NAG 1 1_555 F C1 FUC . F FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? metalc ? metalc1 A OD1 ASP 80 A ASP 80 1_555 J NA NA . A NA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc2 J NA NA . A NA 309 1_555 C O LEU 100 C LEU 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6CX5 _atom_sites.fract_transf_matrix[1][1] 0.012695 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005241 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006628 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 NAG A 1 301 300 NAG NAG . H 8 PLM A 1 307 502 PLM PLM . I 9 FJM A 1 308 501 FJM 254 . J 10 NA A 1 309 1 NA NA . K 11 HOH A 1 401 1 HOH HOH . K 11 HOH A 2 402 6 HOH HOH . K 11 HOH A 3 403 112 HOH HOH . K 11 HOH A 4 404 1 HOH HOH . K 11 HOH A 5 405 2 HOH HOH . K 11 HOH A 6 406 28 HOH HOH . K 11 HOH A 7 407 179 HOH HOH . K 11 HOH A 8 408 27 HOH HOH . K 11 HOH A 9 409 11 HOH HOH . K 11 HOH A 10 410 16 HOH HOH . K 11 HOH A 11 411 55 HOH HOH . K 11 HOH A 12 412 41 HOH HOH . K 11 HOH A 13 413 4 HOH HOH . K 11 HOH A 14 414 89 HOH HOH . K 11 HOH A 15 415 185 HOH HOH . K 11 HOH A 16 416 130 HOH HOH . K 11 HOH A 17 417 58 HOH HOH . K 11 HOH A 18 418 56 HOH HOH . K 11 HOH A 19 419 133 HOH HOH . K 11 HOH A 20 420 98 HOH HOH . K 11 HOH A 21 421 79 HOH HOH . K 11 HOH A 22 422 231 HOH HOH . K 11 HOH A 23 423 5 HOH HOH . K 11 HOH A 24 424 19 HOH HOH . K 11 HOH A 25 425 75 HOH HOH . K 11 HOH A 26 426 227 HOH HOH . K 11 HOH A 27 427 46 HOH HOH . K 11 HOH A 28 428 17 HOH HOH . K 11 HOH A 29 429 59 HOH HOH . K 11 HOH A 30 430 59 HOH HOH . K 11 HOH A 31 431 67 HOH HOH . K 11 HOH A 32 432 132 HOH HOH . K 11 HOH A 33 433 182 HOH HOH . K 11 HOH A 34 434 7 HOH HOH . K 11 HOH A 35 435 96 HOH HOH . K 11 HOH A 36 436 234 HOH HOH . K 11 HOH A 37 437 21 HOH HOH . K 11 HOH A 38 438 85 HOH HOH . K 11 HOH A 39 439 33 HOH HOH . K 11 HOH A 40 440 2 HOH HOH . K 11 HOH A 41 441 23 HOH HOH . K 11 HOH A 42 442 97 HOH HOH . K 11 HOH A 43 443 23 HOH HOH . K 11 HOH A 44 444 6 HOH HOH . L 11 HOH B 1 101 26 HOH HOH . L 11 HOH B 2 102 91 HOH HOH . L 11 HOH B 3 103 19 HOH HOH . L 11 HOH B 4 104 40 HOH HOH . L 11 HOH B 5 105 175 HOH HOH . L 11 HOH B 6 106 202 HOH HOH . L 11 HOH B 7 107 49 HOH HOH . L 11 HOH B 8 108 48 HOH HOH . M 11 HOH C 1 301 86 HOH HOH . M 11 HOH C 2 302 20 HOH HOH . M 11 HOH C 3 303 92 HOH HOH . M 11 HOH C 4 304 35 HOH HOH . M 11 HOH C 5 305 162 HOH HOH . M 11 HOH C 6 306 100 HOH HOH . M 11 HOH C 7 307 28 HOH HOH . M 11 HOH C 8 308 177 HOH HOH . M 11 HOH C 9 309 3 HOH HOH . M 11 HOH C 10 310 122 HOH HOH . M 11 HOH C 11 311 26 HOH HOH . M 11 HOH C 12 312 243 HOH HOH . M 11 HOH C 13 313 55 HOH HOH . M 11 HOH C 14 314 29 HOH HOH . M 11 HOH C 15 315 9 HOH HOH . M 11 HOH C 16 316 3 HOH HOH . M 11 HOH C 17 317 37 HOH HOH . M 11 HOH C 18 318 30 HOH HOH . M 11 HOH C 19 319 74 HOH HOH . M 11 HOH C 20 320 14 HOH HOH . M 11 HOH C 21 321 6 HOH HOH . M 11 HOH C 22 322 102 HOH HOH . M 11 HOH C 23 323 63 HOH HOH . M 11 HOH C 24 324 137 HOH HOH . M 11 HOH C 25 325 223 HOH HOH . M 11 HOH C 26 326 97 HOH HOH . M 11 HOH C 27 327 120 HOH HOH . M 11 HOH C 28 328 158 HOH HOH . M 11 HOH C 29 329 3 HOH HOH . M 11 HOH C 30 330 65 HOH HOH . M 11 HOH C 31 331 8 HOH HOH . M 11 HOH C 32 332 68 HOH HOH . M 11 HOH C 33 333 80 HOH HOH . M 11 HOH C 34 334 296 HOH HOH . N 11 HOH D 1 301 42 HOH HOH . N 11 HOH D 2 302 15 HOH HOH . N 11 HOH D 3 303 24 HOH HOH . N 11 HOH D 4 304 13 HOH HOH . N 11 HOH D 5 305 174 HOH HOH . N 11 HOH D 6 306 54 HOH HOH . N 11 HOH D 7 307 163 HOH HOH . N 11 HOH D 8 308 123 HOH HOH . N 11 HOH D 9 309 45 HOH HOH . N 11 HOH D 10 310 57 HOH HOH . N 11 HOH D 11 311 16 HOH HOH . N 11 HOH D 12 312 2 HOH HOH . N 11 HOH D 13 313 126 HOH HOH . N 11 HOH D 14 314 8 HOH HOH . N 11 HOH D 15 315 82 HOH HOH . N 11 HOH D 16 316 32 HOH HOH . N 11 HOH D 17 317 257 HOH HOH . N 11 HOH D 18 318 43 HOH HOH . N 11 HOH D 19 319 51 HOH HOH . N 11 HOH D 20 320 46 HOH HOH . N 11 HOH D 21 321 4 HOH HOH . N 11 HOH D 22 322 121 HOH HOH . N 11 HOH D 23 323 31 HOH HOH . N 11 HOH D 24 324 97 HOH HOH . N 11 HOH D 25 325 128 HOH HOH . N 11 HOH D 26 326 50 HOH HOH . N 11 HOH D 27 327 111 HOH HOH . N 11 HOH D 28 328 3 HOH HOH . N 11 HOH D 29 329 45 HOH HOH . N 11 HOH D 30 330 238 HOH HOH . N 11 HOH D 31 331 47 HOH HOH . N 11 HOH D 32 332 95 HOH HOH . N 11 HOH D 33 333 143 HOH HOH . N 11 HOH D 34 334 40 HOH HOH . N 11 HOH D 35 335 34 HOH HOH . N 11 HOH D 36 336 174 HOH HOH . N 11 HOH D 37 337 81 HOH HOH . N 11 HOH D 38 338 62 HOH HOH . N 11 HOH D 39 339 159 HOH HOH . N 11 HOH D 40 340 9 HOH HOH . N 11 HOH D 41 341 36 HOH HOH . N 11 HOH D 42 342 150 HOH HOH . N 11 HOH D 43 343 5 HOH HOH . N 11 HOH D 44 344 13 HOH HOH . N 11 HOH D 45 345 80 HOH HOH . N 11 HOH D 46 346 87 HOH HOH . N 11 HOH D 47 347 90 HOH HOH . N 11 HOH D 48 348 1 HOH HOH . N 11 HOH D 49 349 393 HOH HOH . N 11 HOH D 50 350 394 HOH HOH . N 11 HOH D 51 351 135 HOH HOH . N 11 HOH D 52 352 110 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 10 _atom_site.Cartn_x 51.416 _atom_site.Cartn_y 35.52 _atom_site.Cartn_z 16.626 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 34.52 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 309 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #