data_6CX6 # _model_server_result.job_id c9FIphAIhdhY5SabvhRR8w _model_server_result.datetime_utc '2024-10-19 16:48:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cx6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 6CX6 # _exptl.entry_id 6CX6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CX6 _cell.length_a 101.797 _cell.length_b 101.797 _cell.length_c 175.01 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CX6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 93 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 6CX6 _atom_sites.fract_transf_matrix[1][1] 0.009823 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009823 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005714 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 401 2 SAH SAH . D 3 ARS A 1 402 1 ARS ARS . E 2 SAH B 1 401 1 SAH SAH . F 3 ARS B 1 402 2 ARS ARS . G 4 HOH A 1 501 48 HOH HOH . G 4 HOH A 2 502 29 HOH HOH . G 4 HOH A 3 503 1 HOH HOH . G 4 HOH A 4 504 42 HOH HOH . G 4 HOH A 5 505 118 HOH HOH . G 4 HOH A 6 506 94 HOH HOH . G 4 HOH A 7 507 69 HOH HOH . G 4 HOH A 8 508 140 HOH HOH . G 4 HOH A 9 509 174 HOH HOH . G 4 HOH A 10 510 20 HOH HOH . G 4 HOH A 11 511 53 HOH HOH . G 4 HOH A 12 512 10 HOH HOH . G 4 HOH A 13 513 16 HOH HOH . G 4 HOH A 14 514 15 HOH HOH . G 4 HOH A 15 515 97 HOH HOH . G 4 HOH A 16 516 167 HOH HOH . G 4 HOH A 17 517 116 HOH HOH . G 4 HOH A 18 518 144 HOH HOH . G 4 HOH A 19 519 87 HOH HOH . G 4 HOH A 20 520 106 HOH HOH . G 4 HOH A 21 521 139 HOH HOH . G 4 HOH A 22 522 123 HOH HOH . G 4 HOH A 23 523 119 HOH HOH . G 4 HOH A 24 524 44 HOH HOH . H 4 HOH B 1 501 176 HOH HOH . H 4 HOH B 2 502 117 HOH HOH . H 4 HOH B 3 503 83 HOH HOH . H 4 HOH B 4 504 120 HOH HOH . H 4 HOH B 5 505 175 HOH HOH . H 4 HOH B 6 506 39 HOH HOH . H 4 HOH B 7 507 112 HOH HOH . H 4 HOH B 8 508 80 HOH HOH . H 4 HOH B 9 509 92 HOH HOH . H 4 HOH B 10 510 17 HOH HOH . H 4 HOH B 11 511 31 HOH HOH . H 4 HOH B 12 512 46 HOH HOH . H 4 HOH B 13 513 36 HOH HOH . H 4 HOH B 14 514 78 HOH HOH . H 4 HOH B 15 515 34 HOH HOH . H 4 HOH B 16 516 96 HOH HOH . H 4 HOH B 17 517 12 HOH HOH . H 4 HOH B 18 518 30 HOH HOH . H 4 HOH B 19 519 129 HOH HOH . H 4 HOH B 20 520 171 HOH HOH . H 4 HOH B 21 521 91 HOH HOH . H 4 HOH B 22 522 35 HOH HOH . H 4 HOH B 23 523 173 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . E 2 22.891 -45.373 25.274 1 54.81 ? N SAH 401 B 1 HETATM 2 C CA SAH . . . E 2 22.28 -46.421 26.135 1 55.96 ? CA SAH 401 B 1 HETATM 3 C CB SAH . . . E 2 20.997 -46.93 25.535 1 52.96 ? CB SAH 401 B 1 HETATM 4 C CG SAH . . . E 2 20.117 -45.744 25.273 1 54.2 ? CG SAH 401 B 1 HETATM 5 S SD SAH . . . E 2 18.468 -46.32 25.173 1 56.27 ? SD SAH 401 B 1 HETATM 6 C C SAH . . . E 2 23.149 -47.617 26.186 1 62.74 ? C SAH 401 B 1 HETATM 7 O O SAH . . . E 2 23.867 -47.853 25.212 1 66.97 ? O SAH 401 B 1 HETATM 8 O OXT SAH . . . E 2 23.134 -48.389 27.16 1 67.75 ? OXT SAH 401 B 1 HETATM 9 C C5' SAH . . . E 2 17.612 -44.776 25.245 1 61.24 ? C5' SAH 401 B 1 HETATM 10 C C4' SAH . . . E 2 17.831 -44.108 26.615 1 63.6 ? C4' SAH 401 B 1 HETATM 11 O O4' SAH . . . E 2 17.782 -42.691 26.47 1 63.36 ? O4' SAH 401 B 1 HETATM 12 C C3' SAH . . . E 2 16.791 -44.482 27.674 1 62.03 ? C3' SAH 401 B 1 HETATM 13 O O3' SAH . . . E 2 17.461 -44.842 28.887 1 54.85 ? O3' SAH 401 B 1 HETATM 14 C C2' SAH . . . E 2 15.94 -43.247 27.861 1 61.89 ? C2' SAH 401 B 1 HETATM 15 O O2' SAH . . . E 2 15.517 -43.044 29.213 1 69.13 ? O2' SAH 401 B 1 HETATM 16 C C1' SAH . . . E 2 16.868 -42.136 27.421 1 58.66 ? C1' SAH 401 B 1 HETATM 17 N N9 SAH . . . E 2 16.1 -41.052 26.791 1 52.29 ? N9 SAH 401 B 1 HETATM 18 C C8 SAH . . . E 2 15.262 -41.178 25.742 1 50.82 ? C8 SAH 401 B 1 HETATM 19 N N7 SAH . . . E 2 14.734 -39.972 25.417 1 49.95 ? N7 SAH 401 B 1 HETATM 20 C C5 SAH . . . E 2 15.258 -39.071 26.275 1 50.02 ? C5 SAH 401 B 1 HETATM 21 C C6 SAH . . . E 2 15.118 -37.619 26.497 1 50.28 ? C6 SAH 401 B 1 HETATM 22 N N6 SAH . . . E 2 14.294 -36.878 25.699 1 52.94 ? N6 SAH 401 B 1 HETATM 23 N N1 SAH . . . E 2 15.848 -37.083 27.508 1 47.65 ? N1 SAH 401 B 1 HETATM 24 C C2 SAH . . . E 2 16.669 -37.813 28.299 1 48.04 ? C2 SAH 401 B 1 HETATM 25 N N3 SAH . . . E 2 16.836 -39.135 28.154 1 48.96 ? N3 SAH 401 B 1 HETATM 26 C C4 SAH . . . E 2 16.165 -39.791 27.178 1 48.67 ? C4 SAH 401 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #