data_6CX7 # _model_server_result.job_id n6CwwW8eOWMVpaA7fSfSag _model_server_result.datetime_utc '2024-11-24 02:12:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cx7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":301}' # _entry.id 6CX7 # _exptl.entry_id 6CX7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 7 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CX7 _cell.length_a 79.809 _cell.length_b 191.115 _cell.length_c 152.378 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CX7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E NAG 1 E 1 NAG E 511 NAG 5 n E NAG 2 E 2 NAG E 512 NAG 5 n E FUC 3 E 3 FUC E 513 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 C CYS 23 1_555 A SG CYS 91 C CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 138 C CYS 137 1_555 A SG CYS 188 C CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 A SG CYS 163 C CYS 162 1_555 B SG CYS 169 D CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf4 B SG CYS 24 D CYS 23 1_555 B SG CYS 92 D CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 B SG CYS 143 D CYS 142 1_555 B SG CYS 208 D CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf6 C SG CYS 104 A CYS 104 1_555 C SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? disulf ? disulf7 C SG CYS 208 A CYS 208 1_555 C SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf8 D SG CYS 25 B CYS 25 1_555 D SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 C ND2 ASN 20 A ASN 20 1_555 K C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale2 C ND2 ASN 42 A ASN 42 1_555 L C1 NAG . A NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale3 C ND2 ASN 165 A ASN 165 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale5 E O6 NAG . E NAG 1 1_555 E C1 FUC . E FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? metalc ? metalc1 A O GLN 23 C GLN 22 1_555 F NA NA . C NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.926 ? metalc ? metalc2 A OG1 THR 109 C THR 108 1_555 F NA NA . C NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc3 A O ASP 121 C ASP 120 1_555 G NA NA . C NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? metalc ? metalc4 A OH TYR 125 C TYR 124 1_555 G NA NA . C NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? metalc ? metalc5 B O ARG 37 D ARG 36 1_555 H NA NA . D NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? metalc ? metalc6 B O GLY 43 D GLY 42 1_555 H NA NA . D NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc7 B O TRP 158 D TRP 157 1_555 I NA NA . D NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.097 ? metalc ? metalc8 I NA NA . D NA 302 8_457 C OD2 ASP 144 A ASP 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? metalc ? metalc9 C O GLU 97 A GLU 97 1_555 N NA NA . A NA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.963 ? metalc ? metalc10 C OE1 GLN 99 A GLN 99 1_555 N NA NA . A NA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 428 n n C1 O2 PLM doub 429 n n C1 C2 PLM sing 430 n n O1 H PLM sing 431 n n C2 C3 PLM sing 432 n n C2 H21 PLM sing 433 n n C2 H22 PLM sing 434 n n C3 C4 PLM sing 435 n n C3 H31 PLM sing 436 n n C3 H32 PLM sing 437 n n C4 C5 PLM sing 438 n n C4 H41 PLM sing 439 n n C4 H42 PLM sing 440 n n C5 C6 PLM sing 441 n n C5 H51 PLM sing 442 n n C5 H52 PLM sing 443 n n C6 C7 PLM sing 444 n n C6 H61 PLM sing 445 n n C6 H62 PLM sing 446 n n C7 C8 PLM sing 447 n n C7 H71 PLM sing 448 n n C7 H72 PLM sing 449 n n C8 C9 PLM sing 450 n n C8 H81 PLM sing 451 n n C8 H82 PLM sing 452 n n C9 CA PLM sing 453 n n C9 H91 PLM sing 454 n n C9 H92 PLM sing 455 n n CA CB PLM sing 456 n n CA HA1 PLM sing 457 n n CA HA2 PLM sing 458 n n CB CC PLM sing 459 n n CB HB1 PLM sing 460 n n CB HB2 PLM sing 461 n n CC CD PLM sing 462 n n CC HC1 PLM sing 463 n n CC HC2 PLM sing 464 n n CD CE PLM sing 465 n n CD HD1 PLM sing 466 n n CD HD2 PLM sing 467 n n CE CF PLM sing 468 n n CE HE1 PLM sing 469 n n CE HE2 PLM sing 470 n n CF CG PLM sing 471 n n CF HF1 PLM sing 472 n n CF HF2 PLM sing 473 n n CG HG1 PLM sing 474 n n CG HG2 PLM sing 475 n n CG HG3 PLM sing 476 n n # _atom_sites.entry_id 6CX7 _atom_sites.fract_transf_matrix[1][1] 0.01253 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005232 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006563 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 NA C 1 301 2 NA NA . G 6 NA C 1 302 3 NA NA . H 6 NA D 1 301 1 NA NA . I 6 NA D 1 302 4 NA NA . J 7 PLM A 1 301 502 PLM PLM . K 8 NAG A 1 302 500 NAG NAG . L 8 NAG A 1 303 501 NAG NAG . M 9 ELM A 1 307 501 ELM 140 . N 6 NA A 1 308 5 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . J 7 83.59 21.839 174.336 1 68.95 ? C1 PLM 301 A 1 HETATM 2 O O1 PLM . . . J 7 83.478 23.035 174.696 1 74.13 ? O1 PLM 301 A 1 HETATM 3 O O2 PLM . . . J 7 83.23 21.358 173.246 1 73.19 ? O2 PLM 301 A 1 HETATM 4 C C2 PLM . . . J 7 84.242 20.865 175.303 1 64.58 ? C2 PLM 301 A 1 HETATM 5 C C3 PLM . . . J 7 83.216 19.855 175.831 1 61.15 ? C3 PLM 301 A 1 HETATM 6 C C4 PLM . . . J 7 83.888 19.121 176.991 1 59.18 ? C4 PLM 301 A 1 HETATM 7 C C5 PLM . . . J 7 83.343 17.716 177.16 1 56.84 ? C5 PLM 301 A 1 HETATM 8 C C6 PLM . . . J 7 84.088 17.047 178.317 1 58.29 ? C6 PLM 301 A 1 HETATM 9 C C7 PLM . . . J 7 84.088 15.513 178.218 1 57.62 ? C7 PLM 301 A 1 HETATM 10 C C8 PLM . . . J 7 85.494 14.929 178.478 1 59.07 ? C8 PLM 301 A 1 HETATM 11 C C9 PLM . . . J 7 85.976 14.11 177.274 1 59.94 ? C9 PLM 301 A 1 HETATM 12 C CA PLM . . . J 7 87.51 14.062 177.23 1 61.65 ? CA PLM 301 A 1 HETATM 13 C CB PLM . . . J 7 87.967 13.452 175.9 1 63.68 ? CB PLM 301 A 1 HETATM 14 C CC PLM . . . J 7 87.931 14.556 174.84 1 68.64 ? CC PLM 301 A 1 HETATM 15 C CD PLM . . . J 7 88.196 13.998 173.449 1 69.39 ? CD PLM 301 A 1 HETATM 16 C CE PLM . . . J 7 87.256 14.661 172.428 1 72.63 ? CE PLM 301 A 1 HETATM 17 C CF PLM . . . J 7 87.455 16.189 172.317 1 73.32 ? CF PLM 301 A 1 HETATM 18 C CG PLM . . . J 7 88.758 16.523 171.577 1 76.17 ? CG PLM 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 18 #