data_6CXA # _model_server_result.job_id avBYHjyGohIuvzm4nRk_ag _model_server_result.datetime_utc '2024-11-07 22:35:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cxa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":309}' # _entry.id 6CXA # _exptl.entry_id 6CXA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CXA _cell.length_a 79.051 _cell.length_b 190.45 _cell.length_c 151.085 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CXA _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 I N N ? 8 J N N ? 8 K N N ? 8 L N N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 5 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 5 5 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E NAG 1 E 1 NAG A 310 NAG 5 n E NAG 2 E 2 NAG A 311 NAG 5 n E BMA 3 E 3 BMA A 312 BMA 5 n E MAN 4 E 4 MAN A 313 MAN 5 n E FUC 5 E 5 FUC A 315 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 208 A CYS 208 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 C SG CYS 24 C CYS 23 1_555 C SG CYS 91 C CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 C SG CYS 138 C CYS 137 1_555 C SG CYS 188 C CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf5 C SG CYS 163 C CYS 162 1_555 D SG CYS 169 D CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf6 D SG CYS 24 D CYS 23 1_555 D SG CYS 92 D CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 D SG CYS 143 D CYS 142 1_555 D SG CYS 208 D CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? covale ? covale1 A ND2 ASN 20 A ASN 20 1_555 F C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale2 A ND2 ASN 42 A ASN 42 1_555 G C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale3 A ND2 ASN 165 A ASN 165 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale4 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 E O6 NAG . E NAG 1 1_555 E C1 FUC . E FUC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale6 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale7 E O3 BMA . E BMA 3 1_555 E C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? metalc ? metalc1 A O GLU 97 A GLU 97 1_555 I NA NA . A NA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.938 ? metalc ? metalc2 A OE1 GLN 99 A GLN 99 1_555 I NA NA . A NA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc3 A OD2 ASP 144 A ASP 144 1_555 L NA NA . D NA 302 8_545 ? ? ? ? ? ? ? ? ? ? ? ? 3.04 ? metalc ? metalc4 C O GLN 23 C GLN 22 1_555 J NA NA . C NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc5 C OG1 THR 109 C THR 108 1_555 J NA NA . C NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc6 D O PRO 150 D PRO 149 1_555 K NA NA . D NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.05 ? metalc ? metalc7 D O HIS 152 D HIS 151 1_555 K NA NA . D NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.12 ? metalc ? metalc8 D O HIS 205 D HIS 204 1_555 L NA NA . D NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.189 ? metalc ? metalc9 D O TYR 213 D TYR 212 1_555 K NA NA . D NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6CXA _atom_sites.fract_transf_matrix[1][1] 0.01265 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005251 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006619 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 NAG A 1 301 300 NAG NAG . G 6 NAG A 1 302 301 NAG NAG . H 7 EMG A 1 308 501 EMG 142 . I 8 NA A 1 309 1 NA NA . J 8 NA C 1 301 2 NA NA . K 8 NA D 1 301 3 NA NA . L 8 NA D 1 302 4 NA NA . M 9 HOH A 1 401 18 HOH HOH . M 9 HOH A 2 402 59 HOH HOH . M 9 HOH A 3 403 36 HOH HOH . M 9 HOH A 4 404 74 HOH HOH . M 9 HOH A 5 405 105 HOH HOH . M 9 HOH A 6 406 25 HOH HOH . M 9 HOH A 7 407 97 HOH HOH . M 9 HOH A 8 408 75 HOH HOH . M 9 HOH A 9 409 66 HOH HOH . M 9 HOH A 10 410 41 HOH HOH . M 9 HOH A 11 411 112 HOH HOH . M 9 HOH A 12 412 17 HOH HOH . M 9 HOH A 13 413 49 HOH HOH . M 9 HOH A 14 414 22 HOH HOH . M 9 HOH A 15 415 123 HOH HOH . M 9 HOH A 16 416 91 HOH HOH . M 9 HOH A 17 417 10 HOH HOH . M 9 HOH A 18 418 81 HOH HOH . M 9 HOH A 19 419 98 HOH HOH . M 9 HOH A 20 420 148 HOH HOH . M 9 HOH A 21 421 129 HOH HOH . M 9 HOH A 22 422 20 HOH HOH . M 9 HOH A 23 423 141 HOH HOH . M 9 HOH A 24 424 72 HOH HOH . M 9 HOH A 25 425 122 HOH HOH . M 9 HOH A 26 426 84 HOH HOH . M 9 HOH A 27 427 57 HOH HOH . M 9 HOH A 28 428 62 HOH HOH . M 9 HOH A 29 429 50 HOH HOH . M 9 HOH A 30 430 53 HOH HOH . M 9 HOH A 31 431 9 HOH HOH . M 9 HOH A 32 432 114 HOH HOH . M 9 HOH A 33 433 147 HOH HOH . N 9 HOH B 1 101 101 HOH HOH . N 9 HOH B 2 102 127 HOH HOH . N 9 HOH B 3 103 33 HOH HOH . N 9 HOH B 4 104 65 HOH HOH . N 9 HOH B 5 105 26 HOH HOH . N 9 HOH B 6 106 21 HOH HOH . O 9 HOH C 1 401 47 HOH HOH . O 9 HOH C 2 402 128 HOH HOH . O 9 HOH C 3 403 16 HOH HOH . O 9 HOH C 4 404 100 HOH HOH . O 9 HOH C 5 405 27 HOH HOH . O 9 HOH C 6 406 89 HOH HOH . O 9 HOH C 7 407 15 HOH HOH . O 9 HOH C 8 408 34 HOH HOH . O 9 HOH C 9 409 99 HOH HOH . O 9 HOH C 10 410 63 HOH HOH . O 9 HOH C 11 411 90 HOH HOH . O 9 HOH C 12 412 109 HOH HOH . O 9 HOH C 13 413 80 HOH HOH . O 9 HOH C 14 414 61 HOH HOH . O 9 HOH C 15 415 144 HOH HOH . O 9 HOH C 16 416 14 HOH HOH . O 9 HOH C 17 417 40 HOH HOH . O 9 HOH C 18 418 54 HOH HOH . P 9 HOH D 1 401 95 HOH HOH . P 9 HOH D 2 402 37 HOH HOH . P 9 HOH D 3 403 117 HOH HOH . P 9 HOH D 4 404 108 HOH HOH . P 9 HOH D 5 405 56 HOH HOH . P 9 HOH D 6 406 104 HOH HOH . P 9 HOH D 7 407 55 HOH HOH . P 9 HOH D 8 408 13 HOH HOH . P 9 HOH D 9 409 51 HOH HOH . P 9 HOH D 10 410 11 HOH HOH . P 9 HOH D 11 411 48 HOH HOH . P 9 HOH D 12 412 131 HOH HOH . P 9 HOH D 13 413 82 HOH HOH . P 9 HOH D 14 414 71 HOH HOH . P 9 HOH D 15 415 125 HOH HOH . P 9 HOH D 16 416 143 HOH HOH . P 9 HOH D 17 417 113 HOH HOH . P 9 HOH D 18 418 3 HOH HOH . P 9 HOH D 19 419 88 HOH HOH . P 9 HOH D 20 420 124 HOH HOH . P 9 HOH D 21 421 136 HOH HOH . P 9 HOH D 22 422 120 HOH HOH . P 9 HOH D 23 423 87 HOH HOH . P 9 HOH D 24 424 32 HOH HOH . P 9 HOH D 25 425 94 HOH HOH . P 9 HOH D 26 426 43 HOH HOH . P 9 HOH D 27 427 7 HOH HOH . P 9 HOH D 28 428 31 HOH HOH . P 9 HOH D 29 429 30 HOH HOH . P 9 HOH D 30 430 28 HOH HOH . P 9 HOH D 31 431 70 HOH HOH . P 9 HOH D 32 432 78 HOH HOH . P 9 HOH D 33 433 38 HOH HOH . P 9 HOH D 34 434 24 HOH HOH . P 9 HOH D 35 435 83 HOH HOH . P 9 HOH D 36 436 68 HOH HOH . P 9 HOH D 37 437 5 HOH HOH . P 9 HOH D 38 438 69 HOH HOH . P 9 HOH D 39 439 110 HOH HOH . P 9 HOH D 40 440 111 HOH HOH . P 9 HOH D 41 441 126 HOH HOH . P 9 HOH D 42 442 73 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 8 _atom_site.Cartn_x -36.301 _atom_site.Cartn_y -25.674 _atom_site.Cartn_z 9.997 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 67.66 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 309 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #