data_6CXH # _model_server_result.job_id prsFkNQl0iUyCpdmD6qaUg _model_server_result.datetime_utc '2024-10-19 08:33:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cxh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 6CXH # _exptl.entry_id 6CXH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 494.573 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6CXH _cell.length_a 143.84 _cell.length_b 143.84 _cell.length_c 146.152 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CXH _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_245 -y-3,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -359.6 -124.569094 0 3 'crystal symmetry operation' 3_325 -x+y-2,-x-3,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -71.92 -373.707282 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N HIS 33 A HIS 33 1_555 D CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.86 ? metalc ? metalc2 A ND1 HIS 33 A HIS 33 1_555 D CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc3 A ND1 HIS 137 A HIS 137 1_555 D CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc4 A NE2 HIS 139 A HIS 139 1_555 D CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? # _chem_comp.formula 'C23 H42 O11' _chem_comp.formula_weight 494.573 _chem_comp.id CM5 _chem_comp.mon_nstd_flag . _chem_comp.name 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '5-CYCLOHEXYLPENTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE;CYMAL-5' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C8 CM5 sing 70 n n C7 C6 CM5 sing 71 n n C7 H71 CM5 sing 72 n n C7 H72 CM5 sing 73 n n C8 C9 CM5 sing 74 n n C8 H81 CM5 sing 75 n n C8 H82 CM5 sing 76 n n C9 C10 CM5 sing 77 n n C9 H91 CM5 sing 78 n n C9 H92 CM5 sing 79 n n C10 C11 CM5 sing 80 n n C10 H101 CM5 sing 81 n n C10 H102 CM5 sing 82 n n C11 C6 CM5 sing 83 n n C11 H111 CM5 sing 84 n n C11 H112 CM5 sing 85 n n C6 C5 CM5 sing 86 n n C6 H6 CM5 sing 87 n n C5 C4 CM5 sing 88 n n C5 H51 CM5 sing 89 n n C5 H52 CM5 sing 90 n n C4 C3 CM5 sing 91 n n C4 H41 CM5 sing 92 n n C4 H42 CM5 sing 93 n n C3 C2 CM5 sing 94 n n C3 H31A CM5 sing 95 n n C3 H32A CM5 sing 96 n n C2 C1 CM5 sing 97 n n C2 H21A CM5 sing 98 n n C2 H22A CM5 sing 99 n n C1 O12 CM5 sing 100 n n C1 H11 CM5 sing 101 n n C1 H12 CM5 sing 102 n n O12 C13 CM5 sing 103 n n C13 C18 CM5 sing 104 n n C13 O14 CM5 sing 105 n n C13 H13 CM5 sing 106 n n C18 O22 CM5 sing 107 n n C18 C17 CM5 sing 108 n n C18 H18 CM5 sing 109 n n O22 H22 CM5 sing 110 n n C17 O21 CM5 sing 111 n n C17 C16 CM5 sing 112 n n C17 H17 CM5 sing 113 n n O21 H21 CM5 sing 114 n n O14 C15 CM5 sing 115 n n C15 C19 CM5 sing 116 n n C15 C16 CM5 sing 117 n n C15 H15 CM5 sing 118 n n C19 O20 CM5 sing 119 n n C19 H191 CM5 sing 120 n n C19 H192 CM5 sing 121 n n O20 H20 CM5 sing 122 n n C16 O23 CM5 sing 123 n n C16 H16 CM5 sing 124 n n O23 C24 CM5 sing 125 n n C24 O25 CM5 sing 126 n n C24 C29 CM5 sing 127 n n C24 H24 CM5 sing 128 n n O25 C26 CM5 sing 129 n n C26 C30 CM5 sing 130 n n C26 C27 CM5 sing 131 n n C26 H26 CM5 sing 132 n n C30 O31 CM5 sing 133 n n C30 H301 CM5 sing 134 n n C30 H302 CM5 sing 135 n n O31 H31 CM5 sing 136 n n C27 O32 CM5 sing 137 n n C27 C28 CM5 sing 138 n n C27 H27 CM5 sing 139 n n O32 H32 CM5 sing 140 n n C28 O33 CM5 sing 141 n n C28 C29 CM5 sing 142 n n C28 H28 CM5 sing 143 n n O33 H33 CM5 sing 144 n n C29 O34 CM5 sing 145 n n C29 H29 CM5 sing 146 n n O34 H34 CM5 sing 147 n n # _atom_sites.entry_id 6CXH _atom_sites.fract_transf_matrix[1][1] 0.006952 _atom_sites.fract_transf_matrix[1][2] 0.004014 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008028 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006842 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CU A 1 501 2 CU CU . E 5 CM5 A 1 502 1 CM5 CM5 . F 5 CM5 C 1 301 2 CM5 CM5 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 CM5 . . . F 5 -184.787 -169.404 36.268 1 79.45 ? C7 CM5 301 C 1 HETATM 2 C C8 CM5 . . . F 5 -184.528 -169.061 34.799 1 71.66 ? C8 CM5 301 C 1 HETATM 3 C C9 CM5 . . . F 5 -185.779 -169.039 33.901 1 62.29 ? C9 CM5 301 C 1 HETATM 4 C C10 CM5 . . . F 5 -187.082 -168.57 34.567 1 66.11 ? C10 CM5 301 C 1 HETATM 5 C C11 CM5 . . . F 5 -187.155 -168.82 36.075 1 76.52 ? C11 CM5 301 C 1 HETATM 6 C C6 CM5 . . . F 5 -186.199 -169.967 36.391 1 81.24 ? C6 CM5 301 C 1 HETATM 7 C C5 CM5 . . . F 5 -186.47 -170.721 37.722 1 82.47 ? C5 CM5 301 C 1 HETATM 8 C C4 CM5 . . . F 5 -186.601 -169.903 39.007 1 81.59 ? C4 CM5 301 C 1 HETATM 9 C C3 CM5 . . . F 5 -186.353 -170.887 40.165 1 79.87 ? C3 CM5 301 C 1 HETATM 10 C C2 CM5 . . . F 5 -187.483 -170.882 41.203 1 79.76 ? C2 CM5 301 C 1 HETATM 11 C C1 CM5 . . . F 5 -186.921 -171.048 42.629 1 78.89 ? C1 CM5 301 C 1 HETATM 12 O O12 CM5 . . . F 5 -187.869 -170.602 43.58 1 77.91 ? O12 CM5 301 C 1 HETATM 13 C C13 CM5 . . . F 5 -187.363 -170.135 44.76 1 82.26 ? C13 CM5 301 C 1 HETATM 14 C C18 CM5 . . . F 5 -188.5 -169.607 45.634 1 92.6 ? C18 CM5 301 C 1 HETATM 15 O O22 CM5 . . . F 5 -188.794 -168.235 45.308 1 99.52 ? O22 CM5 301 C 1 HETATM 16 C C17 CM5 . . . F 5 -188.141 -169.705 47.071 1 96.96 ? C17 CM5 301 C 1 HETATM 17 O O21 CM5 . . . F 5 -189.096 -168.948 47.875 1 101.27 ? O21 CM5 301 C 1 HETATM 18 O O14 CM5 . . . F 5 -186.559 -171.224 45.425 1 86.84 ? O14 CM5 301 C 1 HETATM 19 C C15 CM5 . . . F 5 -187.168 -171.965 46.567 1 88.34 ? C15 CM5 301 C 1 HETATM 20 C C19 CM5 . . . F 5 -187.85 -173.2 46.05 1 82.09 ? C19 CM5 301 C 1 HETATM 21 O O20 CM5 . . . F 5 -187.054 -173.741 45.027 1 81.79 ? O20 CM5 301 C 1 HETATM 22 C C16 CM5 . . . F 5 -188.108 -171.148 47.479 1 92.8 ? C16 CM5 301 C 1 HETATM 23 O O23 CM5 . . . F 5 -187.628 -171.276 48.832 1 87.72 ? O23 CM5 301 C 1 HETATM 24 C C24 CM5 . . . F 5 -188.593 -171.508 49.793 1 77.22 ? C24 CM5 301 C 1 HETATM 25 O O25 CM5 . . . F 5 -189.593 -172.528 49.376 1 84.83 ? O25 CM5 301 C 1 HETATM 26 C C26 CM5 . . . F 5 -189.027 -173.905 49.374 1 88.32 ? C26 CM5 301 C 1 HETATM 27 C C30 CM5 . . . F 5 -190.029 -174.923 48.923 1 97.07 ? C30 CM5 301 C 1 HETATM 28 O O31 CM5 . . . F 5 -189.664 -175.356 47.635 1 99.01 ? O31 CM5 301 C 1 HETATM 29 C C27 CM5 . . . F 5 -188.415 -174.272 50.727 1 74.04 ? C27 CM5 301 C 1 HETATM 30 O O32 CM5 . . . F 5 -187.933 -175.623 50.637 1 66.3 ? O32 CM5 301 C 1 HETATM 31 C C28 CM5 . . . F 5 -187.315 -173.306 51.003 1 64.62 ? C28 CM5 301 C 1 HETATM 32 O O33 CM5 . . . F 5 -186.609 -173.599 52.256 1 57.97 ? O33 CM5 301 C 1 HETATM 33 C C29 CM5 . . . F 5 -187.854 -171.926 51.073 1 61.04 ? C29 CM5 301 C 1 HETATM 34 O O34 CM5 . . . F 5 -186.746 -171.049 51.303 1 47.1 ? O34 CM5 301 C 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 34 #