data_6CXH # _model_server_result.job_id bB-2HAS6SOazXK21B0cgqQ _model_server_result.datetime_utc '2024-10-19 08:24:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cxh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":502}' # _entry.id 6CXH # _exptl.entry_id 6CXH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 494.573 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6CXH _cell.length_a 143.84 _cell.length_b 143.84 _cell.length_c 146.152 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CXH _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_245 -y-3,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -359.6 -124.569094 0 3 'crystal symmetry operation' 3_325 -x+y-2,-x-3,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -71.92 -373.707282 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N HIS 33 A HIS 33 1_555 D CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.86 ? metalc ? metalc2 A ND1 HIS 33 A HIS 33 1_555 D CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc3 A ND1 HIS 137 A HIS 137 1_555 D CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc4 A NE2 HIS 139 A HIS 139 1_555 D CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? # _chem_comp.formula 'C23 H42 O11' _chem_comp.formula_weight 494.573 _chem_comp.id CM5 _chem_comp.mon_nstd_flag . _chem_comp.name 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '5-CYCLOHEXYLPENTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE;CYMAL-5' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C8 CM5 sing 70 n n C7 C6 CM5 sing 71 n n C7 H71 CM5 sing 72 n n C7 H72 CM5 sing 73 n n C8 C9 CM5 sing 74 n n C8 H81 CM5 sing 75 n n C8 H82 CM5 sing 76 n n C9 C10 CM5 sing 77 n n C9 H91 CM5 sing 78 n n C9 H92 CM5 sing 79 n n C10 C11 CM5 sing 80 n n C10 H101 CM5 sing 81 n n C10 H102 CM5 sing 82 n n C11 C6 CM5 sing 83 n n C11 H111 CM5 sing 84 n n C11 H112 CM5 sing 85 n n C6 C5 CM5 sing 86 n n C6 H6 CM5 sing 87 n n C5 C4 CM5 sing 88 n n C5 H51 CM5 sing 89 n n C5 H52 CM5 sing 90 n n C4 C3 CM5 sing 91 n n C4 H41 CM5 sing 92 n n C4 H42 CM5 sing 93 n n C3 C2 CM5 sing 94 n n C3 H31A CM5 sing 95 n n C3 H32A CM5 sing 96 n n C2 C1 CM5 sing 97 n n C2 H21A CM5 sing 98 n n C2 H22A CM5 sing 99 n n C1 O12 CM5 sing 100 n n C1 H11 CM5 sing 101 n n C1 H12 CM5 sing 102 n n O12 C13 CM5 sing 103 n n C13 C18 CM5 sing 104 n n C13 O14 CM5 sing 105 n n C13 H13 CM5 sing 106 n n C18 O22 CM5 sing 107 n n C18 C17 CM5 sing 108 n n C18 H18 CM5 sing 109 n n O22 H22 CM5 sing 110 n n C17 O21 CM5 sing 111 n n C17 C16 CM5 sing 112 n n C17 H17 CM5 sing 113 n n O21 H21 CM5 sing 114 n n O14 C15 CM5 sing 115 n n C15 C19 CM5 sing 116 n n C15 C16 CM5 sing 117 n n C15 H15 CM5 sing 118 n n C19 O20 CM5 sing 119 n n C19 H191 CM5 sing 120 n n C19 H192 CM5 sing 121 n n O20 H20 CM5 sing 122 n n C16 O23 CM5 sing 123 n n C16 H16 CM5 sing 124 n n O23 C24 CM5 sing 125 n n C24 O25 CM5 sing 126 n n C24 C29 CM5 sing 127 n n C24 H24 CM5 sing 128 n n O25 C26 CM5 sing 129 n n C26 C30 CM5 sing 130 n n C26 C27 CM5 sing 131 n n C26 H26 CM5 sing 132 n n C30 O31 CM5 sing 133 n n C30 H301 CM5 sing 134 n n C30 H302 CM5 sing 135 n n O31 H31 CM5 sing 136 n n C27 O32 CM5 sing 137 n n C27 C28 CM5 sing 138 n n C27 H27 CM5 sing 139 n n O32 H32 CM5 sing 140 n n C28 O33 CM5 sing 141 n n C28 C29 CM5 sing 142 n n C28 H28 CM5 sing 143 n n O33 H33 CM5 sing 144 n n C29 O34 CM5 sing 145 n n C29 H29 CM5 sing 146 n n O34 H34 CM5 sing 147 n n # _atom_sites.entry_id 6CXH _atom_sites.fract_transf_matrix[1][1] 0.006952 _atom_sites.fract_transf_matrix[1][2] 0.004014 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008028 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006842 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CU A 1 501 2 CU CU . E 5 CM5 A 1 502 1 CM5 CM5 . F 5 CM5 C 1 301 2 CM5 CM5 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 CM5 . . . E 5 -180.384 -185.492 33.798 1 44.28 ? C7 CM5 502 A 1 HETATM 2 C C8 CM5 . . . E 5 -179.37 -185.607 32.652 1 40.45 ? C8 CM5 502 A 1 HETATM 3 C C9 CM5 . . . E 5 -179.737 -184.939 31.304 1 34.02 ? C9 CM5 502 A 1 HETATM 4 C C10 CM5 . . . E 5 -181.179 -184.422 31.114 1 39.83 ? C10 CM5 502 A 1 HETATM 5 C C11 CM5 . . . E 5 -181.981 -184.265 32.41 1 45.98 ? C11 CM5 502 A 1 HETATM 6 C C6 CM5 . . . E 5 -181.774 -185.569 33.17 1 48.02 ? C6 CM5 502 A 1 HETATM 7 C C5 CM5 . . . E 5 -182.938 -185.955 34.114 1 37.59 ? C5 CM5 502 A 1 HETATM 8 C C4 CM5 . . . E 5 -182.872 -185.309 35.49 1 29.51 ? C4 CM5 502 A 1 HETATM 9 C C3 CM5 . . . E 5 -183.927 -185.994 36.368 1 30.1 ? C3 CM5 502 A 1 HETATM 10 C C2 CM5 . . . E 5 -183.836 -187.52 36.225 1 37.99 ? C2 CM5 502 A 1 HETATM 11 C C1 CM5 . . . E 5 -183.93 -188.243 37.586 1 50.18 ? C1 CM5 502 A 1 HETATM 12 O O12 CM5 . . . E 5 -185.123 -187.929 38.278 1 55.13 ? O12 CM5 502 A 1 HETATM 13 C C13 CM5 . . . E 5 -185.095 -188.362 39.574 1 72.04 ? C13 CM5 502 A 1 HETATM 14 C C18 CM5 . . . E 5 -186.361 -187.965 40.328 1 76.53 ? C18 CM5 502 A 1 HETATM 15 O O22 CM5 . . . E 5 -186.633 -186.554 40.242 1 78.06 ? O22 CM5 502 A 1 HETATM 16 C C17 CM5 . . . E 5 -186.182 -188.372 41.74 1 78.95 ? C17 CM5 502 A 1 HETATM 17 O O21 CM5 . . . E 5 -187.207 -187.747 42.562 1 80.06 ? O21 CM5 502 A 1 HETATM 18 O O14 CM5 . . . E 5 -184.919 -189.862 39.608 1 82.92 ? O14 CM5 502 A 1 HETATM 19 C C15 CM5 . . . E 5 -185.067 -190.465 40.96 1 81.84 ? C15 CM5 502 A 1 HETATM 20 C C19 CM5 . . . E 5 -185.231 -191.95 40.822 1 75.52 ? C19 CM5 502 A 1 HETATM 21 O O20 CM5 . . . E 5 -185.703 -192.268 39.541 1 75.17 ? O20 CM5 502 A 1 HETATM 22 C C16 CM5 . . . E 5 -186.215 -189.873 41.801 1 85.75 ? C16 CM5 502 A 1 HETATM 23 O O23 CM5 . . . E 5 -186.053 -190.312 43.156 1 95.89 ? O23 CM5 502 A 1 HETATM 24 C C24 CM5 . . . E 5 -187.255 -190.627 43.747 1 104.08 ? C24 CM5 502 A 1 HETATM 25 O O25 CM5 . . . E 5 -187.996 -191.608 42.914 1 112.09 ? O25 CM5 502 A 1 HETATM 26 C C26 CM5 . . . E 5 -187.68 -193.059 43.114 1 117.4 ? C26 CM5 502 A 1 HETATM 27 C C30 CM5 . . . E 5 -188.975 -193.82 43.11 1 111.1 ? C30 CM5 502 A 1 HETATM 28 O O31 CM5 . . . E 5 -189.696 -193.516 41.946 1 107.24 ? O31 CM5 502 A 1 HETATM 29 C C27 CM5 . . . E 5 -186.858 -193.462 44.369 1 120.42 ? C27 CM5 502 A 1 HETATM 30 O O32 CM5 . . . E 5 -185.959 -194.546 44.036 1 122.24 ? O32 CM5 502 A 1 HETATM 31 C C28 CM5 . . . E 5 -186.079 -192.351 44.991 1 110.37 ? C28 CM5 502 A 1 HETATM 32 O O33 CM5 . . . E 5 -185.518 -192.78 46.281 1 102.92 ? O33 CM5 502 A 1 HETATM 33 C C29 CM5 . . . E 5 -186.95 -191.16 45.145 1 102.55 ? C29 CM5 502 A 1 HETATM 34 O O34 CM5 . . . E 5 -186.309 -190.134 45.914 1 92.94 ? O34 CM5 502 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 34 #