data_6CXM
#
_model_server_result.job_id            cEIVQJyzdrA3TUosjmZwjg 
_model_server_result.datetime_utc      '2025-07-09 05:24:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6cxm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    6CXM 
#
_exptl.entry_id    6CXM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.86 
_cell.angle_gamma         90 
_cell.entry_id            6CXM 
_cell.length_a            63.25 
_cell.length_b            40.3 
_cell.length_c            67.22 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6CXM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 288 n n 
PA O2A NAP sing 289 n n 
PA O5B NAP sing 290 n n 
PA O3 NAP sing 291 n n 
O2A HOA2 NAP sing 292 n n 
O5B C5B NAP sing 293 n n 
C5B C4B NAP sing 294 n n 
C5B H51A NAP sing 295 n n 
C5B H52A NAP sing 296 n n 
C4B O4B NAP sing 297 n n 
C4B C3B NAP sing 298 n n 
C4B H4B NAP sing 299 n n 
O4B C1B NAP sing 300 n n 
C3B O3B NAP sing 301 n n 
C3B C2B NAP sing 302 n n 
C3B H3B NAP sing 303 n n 
O3B HO3A NAP sing 304 n n 
C2B O2B NAP sing 305 n n 
C2B C1B NAP sing 306 n n 
C2B H2B NAP sing 307 n n 
O2B P2B NAP sing 308 n n 
C1B N9A NAP sing 309 n n 
C1B H1B NAP sing 310 n n 
N9A C8A NAP sing 311 n y 
N9A C4A NAP sing 312 n y 
C8A N7A NAP doub 313 n y 
C8A H8A NAP sing 314 n n 
N7A C5A NAP sing 315 n y 
C5A C6A NAP sing 316 n y 
C5A C4A NAP doub 317 n y 
C6A N6A NAP sing 318 n n 
C6A N1A NAP doub 319 n y 
N6A H61A NAP sing 320 n n 
N6A H62A NAP sing 321 n n 
N1A C2A NAP sing 322 n y 
C2A N3A NAP doub 323 n y 
C2A H2A NAP sing 324 n n 
N3A C4A NAP sing 325 n y 
O3 PN NAP sing 326 n n 
PN O1N NAP doub 327 n n 
PN O2N NAP sing 328 n n 
PN O5D NAP sing 329 n n 
O5D C5D NAP sing 330 n n 
C5D C4D NAP sing 331 n n 
C5D H51N NAP sing 332 n n 
C5D H52N NAP sing 333 n n 
C4D O4D NAP sing 334 n n 
C4D C3D NAP sing 335 n n 
C4D H4D NAP sing 336 n n 
O4D C1D NAP sing 337 n n 
C3D O3D NAP sing 338 n n 
C3D C2D NAP sing 339 n n 
C3D H3D NAP sing 340 n n 
O3D HO3N NAP sing 341 n n 
C2D O2D NAP sing 342 n n 
C2D C1D NAP sing 343 n n 
C2D H2D NAP sing 344 n n 
O2D HO2N NAP sing 345 n n 
C1D N1N NAP sing 346 n n 
C1D H1D NAP sing 347 n n 
N1N C2N NAP sing 348 n y 
N1N C6N NAP doub 349 n y 
C2N C3N NAP doub 350 n y 
C2N H2N NAP sing 351 n n 
C3N C7N NAP sing 352 n n 
C3N C4N NAP sing 353 n y 
C7N O7N NAP doub 354 n n 
C7N N7N NAP sing 355 n n 
N7N H71N NAP sing 356 n n 
N7N H72N NAP sing 357 n n 
C4N C5N NAP doub 358 n y 
C4N H4N NAP sing 359 n n 
C5N C6N NAP sing 360 n y 
C5N H5N NAP sing 361 n n 
C6N H6N NAP sing 362 n n 
P2B O1X NAP doub 363 n n 
P2B O2X NAP sing 364 n n 
P2B O3X NAP sing 365 n n 
O2X HOP2 NAP sing 366 n n 
O3X HOP3 NAP sing 367 n n 
#
_atom_sites.entry_id                     6CXM 
_atom_sites.fract_transf_matrix[1][1]    0.01581 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001067 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024814 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01491 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAP A 1 201 201 NAP NAP . 
D 3 MMV A 1 202 202 MMV MMV . 
E 2 NAP B 1 201 201 NAP NAP . 
F 3 MMV B 1 202 202 MMV MMV . 
G 4 HOH A 1 301 32 HOH HOH . 
G 4 HOH A 2 302 34 HOH HOH . 
G 4 HOH A 3 303 26 HOH HOH . 
G 4 HOH A 4 304 22 HOH HOH . 
G 4 HOH A 5 305 48 HOH HOH . 
G 4 HOH A 6 306 36 HOH HOH . 
G 4 HOH A 7 307 24 HOH HOH . 
G 4 HOH A 8 308 17 HOH HOH . 
G 4 HOH A 9 309 47 HOH HOH . 
G 4 HOH A 10 310 4 HOH HOH . 
G 4 HOH A 11 311 33 HOH HOH . 
G 4 HOH A 12 312 12 HOH HOH . 
G 4 HOH A 13 313 8 HOH HOH . 
G 4 HOH A 14 314 6 HOH HOH . 
G 4 HOH A 15 315 11 HOH HOH . 
G 4 HOH A 16 316 1 HOH HOH . 
G 4 HOH A 17 317 15 HOH HOH . 
G 4 HOH A 18 318 35 HOH HOH . 
G 4 HOH A 19 319 23 HOH HOH . 
G 4 HOH A 20 320 16 HOH HOH . 
G 4 HOH A 21 321 45 HOH HOH . 
G 4 HOH A 22 322 2 HOH HOH . 
G 4 HOH A 23 323 46 HOH HOH . 
G 4 HOH A 24 324 25 HOH HOH . 
G 4 HOH A 25 325 31 HOH HOH . 
G 4 HOH A 26 326 37 HOH HOH . 
G 4 HOH A 27 327 50 HOH HOH . 
H 4 HOH B 1 301 20 HOH HOH . 
H 4 HOH B 2 302 10 HOH HOH . 
H 4 HOH B 3 303 49 HOH HOH . 
H 4 HOH B 4 304 13 HOH HOH . 
H 4 HOH B 5 305 21 HOH HOH . 
H 4 HOH B 6 306 40 HOH HOH . 
H 4 HOH B 7 307 28 HOH HOH . 
H 4 HOH B 8 308 5 HOH HOH . 
H 4 HOH B 9 309 43 HOH HOH . 
H 4 HOH B 10 310 19 HOH HOH . 
H 4 HOH B 11 311 18 HOH HOH . 
H 4 HOH B 12 312 41 HOH HOH . 
H 4 HOH B 13 313 27 HOH HOH . 
H 4 HOH B 14 314 9 HOH HOH . 
H 4 HOH B 15 315 3 HOH HOH . 
H 4 HOH B 16 316 39 HOH HOH . 
H 4 HOH B 17 317 30 HOH HOH . 
H 4 HOH B 18 318 42 HOH HOH . 
H 4 HOH B 19 319 44 HOH HOH . 
H 4 HOH B 20 320 7 HOH HOH . 
H 4 HOH B 21 321 14 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . C 2 37.278 -4.875 18.696 1 48.15 ? PA NAP 201 A 1 
HETATM 2 O O1A NAP . . . C 2 37.318 -6.33 18.411 1 46.31 ? O1A NAP 201 A 1 
HETATM 3 O O2A NAP . . . C 2 35.864 -4.337 18.716 1 48.65 ? O2A NAP 201 A 1 
HETATM 4 O O5B NAP . . . C 2 37.975 -4.456 20.105 1 51.29 ? O5B NAP 201 A 1 
HETATM 5 C C5B NAP . . . C 2 39.334 -4.873 20.313 1 52.33 ? C5B NAP 201 A 1 
HETATM 6 C C4B NAP . . . C 2 39.74 -4.525 21.717 1 54.22 ? C4B NAP 201 A 1 
HETATM 7 O O4B NAP . . . C 2 38.91 -5.272 22.632 1 56.13 ? O4B NAP 201 A 1 
HETATM 8 C C3B NAP . . . C 2 41.171 -4.914 22.092 1 53.43 ? C3B NAP 201 A 1 
HETATM 9 O O3B NAP . . . C 2 42.177 -4.016 21.634 1 52.75 ? O3B NAP 201 A 1 
HETATM 10 C C2B NAP . . . C 2 40.981 -4.829 23.601 1 54.38 ? C2B NAP 201 A 1 
HETATM 11 O O2B NAP . . . C 2 40.872 -3.442 23.977 1 53.29 ? O2B NAP 201 A 1 
HETATM 12 C C1B NAP . . . C 2 39.64 -5.516 23.813 1 56.12 ? C1B NAP 201 A 1 
HETATM 13 N N9A NAP . . . C 2 39.745 -6.954 23.969 1 59.61 ? N9A NAP 201 A 1 
HETATM 14 C C8A NAP . . . C 2 39.897 -7.891 22.982 1 60.94 ? C8A NAP 201 A 1 
HETATM 15 N N7A NAP . . . C 2 39.988 -9.123 23.422 1 61.76 ? N7A NAP 201 A 1 
HETATM 16 C C5A NAP . . . C 2 39.887 -8.985 24.798 1 61.55 ? C5A NAP 201 A 1 
HETATM 17 C C6A NAP . . . C 2 39.933 -9.92 25.852 1 63.21 ? C6A NAP 201 A 1 
HETATM 18 N N6A NAP . . . C 2 40.083 -11.234 25.674 1 64.36 ? N6A NAP 201 A 1 
HETATM 19 N N1A NAP . . . C 2 39.821 -9.45 27.115 1 63.2 ? N1A NAP 201 A 1 
HETATM 20 C C2A NAP . . . C 2 39.678 -8.134 27.299 1 62.99 ? C2A NAP 201 A 1 
HETATM 21 N N3A NAP . . . C 2 39.628 -7.161 26.385 1 63.33 ? N3A NAP 201 A 1 
HETATM 22 C C4A NAP . . . C 2 39.736 -7.656 25.15 1 61.37 ? C4A NAP 201 A 1 
HETATM 23 O O3 NAP . . . C 2 38.117 -4.076 17.603 1 42.65 ? O3 NAP 201 A 1 
HETATM 24 P PN NAP . . . C 2 38.49 -4.408 16.086 1 41.09 ? PN NAP 201 A 1 
HETATM 25 O O1N NAP . . . C 2 39.513 -3.455 15.604 1 42.47 ? O1N NAP 201 A 1 
HETATM 26 O O2N NAP . . . C 2 38.696 -5.863 15.905 1 37.55 ? O2N NAP 201 A 1 
HETATM 27 O O5D NAP . . . C 2 37.142 -3.95 15.379 1 43.52 ? O5D NAP 201 A 1 
HETATM 28 C C5D NAP . . . C 2 37.036 -2.556 15.055 1 41.28 ? C5D NAP 201 A 1 
HETATM 29 C C4D NAP . . . C 2 36.522 -2.393 13.653 1 40.6 ? C4D NAP 201 A 1 
HETATM 30 O O4D NAP . . . C 2 35.398 -3.277 13.439 1 39.87 ? O4D NAP 201 A 1 
HETATM 31 C C3D NAP . . . C 2 36.015 -0.981 13.345 1 41.84 ? C3D NAP 201 A 1 
HETATM 32 O O3D NAP . . . C 2 36.371 -0.644 12.012 1 42.84 ? O3D NAP 201 A 1 
HETATM 33 C C2D NAP . . . C 2 34.499 -1.133 13.455 1 40.76 ? C2D NAP 201 A 1 
HETATM 34 O O2D NAP . . . C 2 33.809 -0.178 12.658 1 39.56 ? O2D NAP 201 A 1 
HETATM 35 C C1D NAP . . . C 2 34.343 -2.536 12.892 1 40.19 ? C1D NAP 201 A 1 
HETATM 36 N N1N NAP . . . C 2 33.027 -3.227 13.253 1 42.32 ? N1N NAP 201 A 1 
HETATM 37 C C2N NAP . . . C 2 32.261 -3.476 12.175 1 42.34 ? C2N NAP 201 A 1 
HETATM 38 C C3N NAP . . . C 2 31.087 -4.19 12.308 1 40.77 ? C3N NAP 201 A 1 
HETATM 39 C C7N NAP . . . C 2 30.232 -4.401 11.089 1 38.15 ? C7N NAP 201 A 1 
HETATM 40 O O7N NAP . . . C 2 29.251 -5.151 11.156 1 35.07 ? O7N NAP 201 A 1 
HETATM 41 N N7N NAP . . . C 2 30.602 -3.804 9.959 1 37.7 ? N7N NAP 201 A 1 
HETATM 42 C C4N NAP . . . C 2 30.719 -4.637 13.575 1 41.97 ? C4N NAP 201 A 1 
HETATM 43 C C5N NAP . . . C 2 31.524 -4.362 14.667 1 42.67 ? C5N NAP 201 A 1 
HETATM 44 C C6N NAP . . . C 2 32.687 -3.645 14.489 1 42.57 ? C6N NAP 201 A 1 
HETATM 45 P P2B NAP . . . C 2 41.888 -2.797 25.029 1 48.9 ? P2B NAP 201 A 1 
HETATM 46 O O1X NAP . . . C 2 43.009 -2.235 24.217 1 45.25 ? O1X NAP 201 A 1 
HETATM 47 O O2X NAP . . . C 2 41.1 -1.764 25.865 1 48.07 ? O2X NAP 201 A 1 
HETATM 48 O O3X NAP . . . C 2 42.233 -3.984 25.939 1 45.83 ? O3X NAP 201 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           48 
#