data_6CXU # _model_server_result.job_id wAW-r9XjGuU6vrlzTMA__g _model_server_result.datetime_utc '2024-11-24 08:53:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cxu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 6CXU # _exptl.entry_id 6CXU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 26.017 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CYANIDE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CXU _cell.length_a 86.91 _cell.length_b 97.95 _cell.length_c 129.34 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CXU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 298 A CYS 308 1_555 B SG CYS 298 B CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 A NE2 HIS 336 A HIS 346 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? metalc ? metalc2 B NE2 HIS 336 B HIS 346 1_555 F FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? # _chem_comp.formula 'C N -1' _chem_comp.formula_weight 26.017 _chem_comp.id CYN _chem_comp.mon_nstd_flag . _chem_comp.name 'CYANIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 C _chem_comp_bond.atom_id_2 N _chem_comp_bond.comp_id CYN _chem_comp_bond.value_order trip _chem_comp_bond.pdbx_ordinal 70 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 6CXU _atom_sites.fract_transf_matrix[1][1] 0.011506 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010209 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007732 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 500 500 HEM HEM . D 3 CYN A 1 501 501 CYN CYN . E 4 TRP A 1 502 502 TRP TRP . F 2 HEM B 1 500 500 HEM HEM . G 3 CYN B 1 501 501 CYN CYN . H 4 TRP B 1 502 502 TRP TRP . I 5 HOH A 1 601 185 HOH HOH . I 5 HOH A 2 602 16 HOH HOH . I 5 HOH A 3 603 136 HOH HOH . I 5 HOH A 4 604 148 HOH HOH . I 5 HOH A 5 605 85 HOH HOH . I 5 HOH A 6 606 186 HOH HOH . I 5 HOH A 7 607 20 HOH HOH . I 5 HOH A 8 608 181 HOH HOH . I 5 HOH A 9 609 18 HOH HOH . I 5 HOH A 10 610 12 HOH HOH . I 5 HOH A 11 611 172 HOH HOH . I 5 HOH A 12 612 178 HOH HOH . I 5 HOH A 13 613 37 HOH HOH . I 5 HOH A 14 614 84 HOH HOH . I 5 HOH A 15 615 15 HOH HOH . I 5 HOH A 16 616 124 HOH HOH . I 5 HOH A 17 617 30 HOH HOH . I 5 HOH A 18 618 119 HOH HOH . I 5 HOH A 19 619 174 HOH HOH . I 5 HOH A 20 620 14 HOH HOH . I 5 HOH A 21 621 149 HOH HOH . I 5 HOH A 22 622 171 HOH HOH . I 5 HOH A 23 623 92 HOH HOH . I 5 HOH A 24 624 182 HOH HOH . I 5 HOH A 25 625 9 HOH HOH . I 5 HOH A 26 626 115 HOH HOH . I 5 HOH A 27 627 75 HOH HOH . I 5 HOH A 28 628 83 HOH HOH . I 5 HOH A 29 629 57 HOH HOH . I 5 HOH A 30 630 162 HOH HOH . I 5 HOH A 31 631 6 HOH HOH . I 5 HOH A 32 632 130 HOH HOH . I 5 HOH A 33 633 11 HOH HOH . I 5 HOH A 34 634 139 HOH HOH . I 5 HOH A 35 635 107 HOH HOH . I 5 HOH A 36 636 161 HOH HOH . I 5 HOH A 37 637 122 HOH HOH . I 5 HOH A 38 638 13 HOH HOH . I 5 HOH A 39 639 106 HOH HOH . I 5 HOH A 40 640 170 HOH HOH . I 5 HOH A 41 641 40 HOH HOH . I 5 HOH A 42 642 134 HOH HOH . I 5 HOH A 43 643 54 HOH HOH . I 5 HOH A 44 644 108 HOH HOH . I 5 HOH A 45 645 147 HOH HOH . I 5 HOH A 46 646 8 HOH HOH . I 5 HOH A 47 647 120 HOH HOH . I 5 HOH A 48 648 96 HOH HOH . I 5 HOH A 49 649 103 HOH HOH . I 5 HOH A 50 650 179 HOH HOH . I 5 HOH A 51 651 142 HOH HOH . I 5 HOH A 52 652 26 HOH HOH . I 5 HOH A 53 653 5 HOH HOH . I 5 HOH A 54 654 39 HOH HOH . I 5 HOH A 55 655 3 HOH HOH . I 5 HOH A 56 656 146 HOH HOH . I 5 HOH A 57 657 90 HOH HOH . I 5 HOH A 58 658 98 HOH HOH . I 5 HOH A 59 659 93 HOH HOH . I 5 HOH A 60 660 52 HOH HOH . I 5 HOH A 61 661 55 HOH HOH . I 5 HOH A 62 662 48 HOH HOH . I 5 HOH A 63 663 129 HOH HOH . I 5 HOH A 64 664 89 HOH HOH . I 5 HOH A 65 665 169 HOH HOH . I 5 HOH A 66 666 34 HOH HOH . I 5 HOH A 67 667 1 HOH HOH . I 5 HOH A 68 668 53 HOH HOH . I 5 HOH A 69 669 153 HOH HOH . I 5 HOH A 70 670 51 HOH HOH . I 5 HOH A 71 671 43 HOH HOH . I 5 HOH A 72 672 152 HOH HOH . I 5 HOH A 73 673 41 HOH HOH . I 5 HOH A 74 674 157 HOH HOH . I 5 HOH A 75 675 91 HOH HOH . I 5 HOH A 76 676 176 HOH HOH . I 5 HOH A 77 677 49 HOH HOH . I 5 HOH A 78 678 7 HOH HOH . I 5 HOH A 79 679 160 HOH HOH . I 5 HOH A 80 680 150 HOH HOH . I 5 HOH A 81 681 46 HOH HOH . I 5 HOH A 82 682 17 HOH HOH . I 5 HOH A 83 683 47 HOH HOH . I 5 HOH A 84 684 173 HOH HOH . I 5 HOH A 85 685 10 HOH HOH . I 5 HOH A 86 686 36 HOH HOH . I 5 HOH A 87 687 183 HOH HOH . I 5 HOH A 88 688 94 HOH HOH . I 5 HOH A 89 689 86 HOH HOH . I 5 HOH A 90 690 168 HOH HOH . I 5 HOH A 91 691 42 HOH HOH . I 5 HOH A 92 692 175 HOH HOH . I 5 HOH A 93 693 180 HOH HOH . I 5 HOH A 94 694 184 HOH HOH . I 5 HOH A 95 695 56 HOH HOH . I 5 HOH A 96 696 44 HOH HOH . I 5 HOH A 97 697 132 HOH HOH . I 5 HOH A 98 698 187 HOH HOH . I 5 HOH A 99 699 177 HOH HOH . I 5 HOH A 100 700 166 HOH HOH . I 5 HOH A 101 701 88 HOH HOH . I 5 HOH A 102 702 50 HOH HOH . I 5 HOH A 103 703 167 HOH HOH . I 5 HOH A 104 704 117 HOH HOH . I 5 HOH A 105 705 135 HOH HOH . J 5 HOH B 1 601 189 HOH HOH . J 5 HOH B 2 602 194 HOH HOH . J 5 HOH B 3 603 154 HOH HOH . J 5 HOH B 4 604 67 HOH HOH . J 5 HOH B 5 605 199 HOH HOH . J 5 HOH B 6 606 111 HOH HOH . J 5 HOH B 7 607 77 HOH HOH . J 5 HOH B 8 608 21 HOH HOH . J 5 HOH B 9 609 78 HOH HOH . J 5 HOH B 10 610 191 HOH HOH . J 5 HOH B 11 611 65 HOH HOH . J 5 HOH B 12 612 200 HOH HOH . J 5 HOH B 13 613 82 HOH HOH . J 5 HOH B 14 614 192 HOH HOH . J 5 HOH B 15 615 188 HOH HOH . J 5 HOH B 16 616 206 HOH HOH . J 5 HOH B 17 617 217 HOH HOH . J 5 HOH B 18 618 45 HOH HOH . J 5 HOH B 19 619 203 HOH HOH . J 5 HOH B 20 620 71 HOH HOH . J 5 HOH B 21 621 74 HOH HOH . J 5 HOH B 22 622 81 HOH HOH . J 5 HOH B 23 623 23 HOH HOH . J 5 HOH B 24 624 19 HOH HOH . J 5 HOH B 25 625 99 HOH HOH . J 5 HOH B 26 626 209 HOH HOH . J 5 HOH B 27 627 28 HOH HOH . J 5 HOH B 28 628 109 HOH HOH . J 5 HOH B 29 629 208 HOH HOH . J 5 HOH B 30 630 207 HOH HOH . J 5 HOH B 31 631 204 HOH HOH . J 5 HOH B 32 632 145 HOH HOH . J 5 HOH B 33 633 137 HOH HOH . J 5 HOH B 34 634 212 HOH HOH . J 5 HOH B 35 635 102 HOH HOH . J 5 HOH B 36 636 29 HOH HOH . J 5 HOH B 37 637 140 HOH HOH . J 5 HOH B 38 638 70 HOH HOH . J 5 HOH B 39 639 2 HOH HOH . J 5 HOH B 40 640 64 HOH HOH . J 5 HOH B 41 641 155 HOH HOH . J 5 HOH B 42 642 196 HOH HOH . J 5 HOH B 43 643 24 HOH HOH . J 5 HOH B 44 644 105 HOH HOH . J 5 HOH B 45 645 151 HOH HOH . J 5 HOH B 46 646 143 HOH HOH . J 5 HOH B 47 647 126 HOH HOH . J 5 HOH B 48 648 114 HOH HOH . J 5 HOH B 49 649 156 HOH HOH . J 5 HOH B 50 650 100 HOH HOH . J 5 HOH B 51 651 33 HOH HOH . J 5 HOH B 52 652 38 HOH HOH . J 5 HOH B 53 653 112 HOH HOH . J 5 HOH B 54 654 128 HOH HOH . J 5 HOH B 55 655 22 HOH HOH . J 5 HOH B 56 656 66 HOH HOH . J 5 HOH B 57 657 60 HOH HOH . J 5 HOH B 58 658 193 HOH HOH . J 5 HOH B 59 659 63 HOH HOH . J 5 HOH B 60 660 215 HOH HOH . J 5 HOH B 61 661 73 HOH HOH . J 5 HOH B 62 662 218 HOH HOH . J 5 HOH B 63 663 25 HOH HOH . J 5 HOH B 64 664 125 HOH HOH . J 5 HOH B 65 665 76 HOH HOH . J 5 HOH B 66 666 158 HOH HOH . J 5 HOH B 67 667 198 HOH HOH . J 5 HOH B 68 668 79 HOH HOH . J 5 HOH B 69 669 219 HOH HOH . J 5 HOH B 70 670 159 HOH HOH . J 5 HOH B 71 671 216 HOH HOH . J 5 HOH B 72 672 61 HOH HOH . J 5 HOH B 73 673 4 HOH HOH . J 5 HOH B 74 674 118 HOH HOH . J 5 HOH B 75 675 87 HOH HOH . J 5 HOH B 76 676 138 HOH HOH . J 5 HOH B 77 677 62 HOH HOH . J 5 HOH B 78 678 80 HOH HOH . J 5 HOH B 79 679 35 HOH HOH . J 5 HOH B 80 680 213 HOH HOH . J 5 HOH B 81 681 141 HOH HOH . J 5 HOH B 82 682 113 HOH HOH . J 5 HOH B 83 683 202 HOH HOH . J 5 HOH B 84 684 116 HOH HOH . J 5 HOH B 85 685 69 HOH HOH . J 5 HOH B 86 686 163 HOH HOH . J 5 HOH B 87 687 32 HOH HOH . J 5 HOH B 88 688 133 HOH HOH . J 5 HOH B 89 689 131 HOH HOH . J 5 HOH B 90 690 197 HOH HOH . J 5 HOH B 91 691 110 HOH HOH . J 5 HOH B 92 692 104 HOH HOH . J 5 HOH B 93 693 31 HOH HOH . J 5 HOH B 94 694 72 HOH HOH . J 5 HOH B 95 695 68 HOH HOH . J 5 HOH B 96 696 59 HOH HOH . J 5 HOH B 97 697 195 HOH HOH . J 5 HOH B 98 698 190 HOH HOH . J 5 HOH B 99 699 214 HOH HOH . J 5 HOH B 100 700 101 HOH HOH . J 5 HOH B 101 701 127 HOH HOH . J 5 HOH B 102 702 205 HOH HOH . J 5 HOH B 103 703 201 HOH HOH . J 5 HOH B 104 704 95 HOH HOH . J 5 HOH B 105 705 211 HOH HOH . J 5 HOH B 106 706 27 HOH HOH . J 5 HOH B 107 707 97 HOH HOH . J 5 HOH B 108 708 123 HOH HOH . J 5 HOH B 109 709 58 HOH HOH . J 5 HOH B 110 710 121 HOH HOH . J 5 HOH B 111 711 210 HOH HOH . J 5 HOH B 112 712 165 HOH HOH . J 5 HOH B 113 713 144 HOH HOH . J 5 HOH B 114 714 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C CYN . . . D 3 109.271 -4.63 148.779 1 71.27 ? C CYN 501 A 1 HETATM 2 N N CYN . . . D 3 109.713 -3.673 149.591 1 77.08 ? N CYN 501 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 2 #