data_6CY3
#
_model_server_result.job_id            JFOcnsPLzvnNErf81NsKIQ 
_model_server_result.datetime_utc      '2024-11-28 20:16:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6cy3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    6CY3 
#
_exptl.entry_id    6CY3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              687.554 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DEPHOSPHO COENZYME A' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6CY3 
_cell.length_a            55.51 
_cell.length_b            74.01 
_cell.length_c            182.46 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6CY3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 91.23 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 46 A CYS 46 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? 
metalc ? metalc2 A NE2 HIS 67 A HIS 67 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc3 A SG CYS 97 A CYS 97 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? 
metalc ? metalc4 A SG CYS 100 A CYS 100 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc5 A SG CYS 103 A CYS 103 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc6 A SG CYS 111 A CYS 111 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc7 A SG CYS 174 A CYS 174 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc8 B ZN ZN . A ZN 401 1_555 D S44 COD . A COD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? 
#
_chem_comp.formula           'C21 H35 N7 O13 P2 S' 
_chem_comp.formula_weight    687.554 
_chem_comp.id                COD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DEPHOSPHO COENZYME A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 COD sing 70 n y 
N1 C6 COD doub 71 n y 
C2 N3 COD doub 72 n y 
C2 HC2 COD sing 73 n n 
N3 C4 COD sing 74 n y 
C4 C5 COD doub 75 n y 
C4 N10 COD sing 76 n y 
C5 C6 COD sing 77 n y 
C5 N8 COD sing 78 n y 
C6 N7 COD sing 79 n n 
N7 HN71 COD sing 80 n n 
N7 HN72 COD sing 81 n n 
N8 C9 COD doub 82 n y 
C9 N10 COD sing 83 n y 
C9 HC9 COD sing 84 n n 
N10 C11 COD sing 85 n n 
C11 C12 COD sing 86 n n 
C11 O17 COD sing 87 n n 
C11 HC11 COD sing 88 n n 
C12 O13 COD sing 89 n n 
C12 C14 COD sing 90 n n 
C12 HC12 COD sing 91 n n 
O13 HO13 COD sing 92 n n 
C14 O15 COD sing 93 n n 
C14 C16 COD sing 94 n n 
C14 HC14 COD sing 95 n n 
O15 HO15 COD sing 96 n n 
C16 O17 COD sing 97 n n 
C16 C18 COD sing 98 n n 
C16 HC16 COD sing 99 n n 
C18 O19 COD sing 100 n n 
C18 H181 COD sing 101 n n 
C18 H182 COD sing 102 n n 
O19 P20 COD sing 103 n n 
P20 O21 COD sing 104 n n 
P20 O22 COD doub 105 n n 
P20 O23 COD sing 106 n n 
O21 HO21 COD sing 107 n n 
O23 P24 COD sing 108 n n 
P24 O25 COD sing 109 n n 
P24 O26 COD doub 110 n n 
P24 O27 COD sing 111 n n 
O25 HO25 COD sing 112 n n 
O27 C28 COD sing 113 n n 
C28 C29 COD sing 114 n n 
C28 H281 COD sing 115 n n 
C28 H282 COD sing 116 n n 
C29 C30 COD sing 117 n n 
C29 C31 COD sing 118 n n 
C29 C32 COD sing 119 n n 
C30 H301 COD sing 120 n n 
C30 H302 COD sing 121 n n 
C30 H303 COD sing 122 n n 
C31 H311 COD sing 123 n n 
C31 H312 COD sing 124 n n 
C31 H313 COD sing 125 n n 
C32 O33 COD sing 126 n n 
C32 C34 COD sing 127 n n 
C32 HC32 COD sing 128 n n 
O33 HO33 COD sing 129 n n 
C34 O35 COD doub 130 n n 
C34 N36 COD sing 131 n n 
N36 C37 COD sing 132 n n 
N36 HN36 COD sing 133 n n 
C37 C38 COD sing 134 n n 
C37 H371 COD sing 135 n n 
C37 H372 COD sing 136 n n 
C38 C39 COD sing 137 n n 
C38 H381 COD sing 138 n n 
C38 H382 COD sing 139 n n 
C39 O40 COD doub 140 n n 
C39 N41 COD sing 141 n n 
N41 C42 COD sing 142 n n 
N41 HN41 COD sing 143 n n 
C42 C43 COD sing 144 n n 
C42 H421 COD sing 145 n n 
C42 H422 COD sing 146 n n 
C43 S44 COD sing 147 n n 
C43 H431 COD sing 148 n n 
C43 H432 COD sing 149 n n 
S44 HS44 COD sing 150 n n 
#
_atom_sites.entry_id                     6CY3 
_atom_sites.fract_transf_matrix[1][1]    0.018015 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013512 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005481 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 401 375 ZN ZN . 
C 2 ZN A 1 402 376 ZN ZN . 
D 3 COD A 1 403 377 COD COD . 
E 4 HOH A 1 501 405 HOH HOH . 
E 4 HOH A 2 502 438 HOH HOH . 
E 4 HOH A 3 503 430 HOH HOH . 
E 4 HOH A 4 504 425 HOH HOH . 
E 4 HOH A 5 505 426 HOH HOH . 
E 4 HOH A 6 506 433 HOH HOH . 
E 4 HOH A 7 507 427 HOH HOH . 
E 4 HOH A 8 508 424 HOH HOH . 
E 4 HOH A 9 509 409 HOH HOH . 
E 4 HOH A 10 510 401 HOH HOH . 
E 4 HOH A 11 511 431 HOH HOH . 
E 4 HOH A 12 512 421 HOH HOH . 
E 4 HOH A 13 513 446 HOH HOH . 
E 4 HOH A 14 514 404 HOH HOH . 
E 4 HOH A 15 515 432 HOH HOH . 
E 4 HOH A 16 516 419 HOH HOH . 
E 4 HOH A 17 517 444 HOH HOH . 
E 4 HOH A 18 518 422 HOH HOH . 
E 4 HOH A 19 519 412 HOH HOH . 
E 4 HOH A 20 520 414 HOH HOH . 
E 4 HOH A 21 521 440 HOH HOH . 
E 4 HOH A 22 522 428 HOH HOH . 
E 4 HOH A 23 523 435 HOH HOH . 
E 4 HOH A 24 524 441 HOH HOH . 
E 4 HOH A 25 525 413 HOH HOH . 
E 4 HOH A 26 526 423 HOH HOH . 
E 4 HOH A 27 527 410 HOH HOH . 
E 4 HOH A 28 528 407 HOH HOH . 
E 4 HOH A 29 529 415 HOH HOH . 
E 4 HOH A 30 530 429 HOH HOH . 
E 4 HOH A 31 531 402 HOH HOH . 
E 4 HOH A 32 532 442 HOH HOH . 
E 4 HOH A 33 533 418 HOH HOH . 
E 4 HOH A 34 534 417 HOH HOH . 
E 4 HOH A 35 535 416 HOH HOH . 
E 4 HOH A 36 536 408 HOH HOH . 
E 4 HOH A 37 537 403 HOH HOH . 
E 4 HOH A 38 538 439 HOH HOH . 
E 4 HOH A 39 539 406 HOH HOH . 
E 4 HOH A 40 540 411 HOH HOH . 
E 4 HOH A 41 541 437 HOH HOH . 
E 4 HOH A 42 542 443 HOH HOH . 
E 4 HOH A 43 543 434 HOH HOH . 
E 4 HOH A 44 544 445 HOH HOH . 
E 4 HOH A 45 545 436 HOH HOH . 
E 4 HOH A 46 546 420 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 COD . . . D 3 16.272 3.845 36.671 1 57.05 ? N1 COD 403 A 1 
HETATM 2 C C2 COD . . . D 3 16.655 5.044 36.209 1 55.58 ? C2 COD 403 A 1 
HETATM 3 N N3 COD . . . D 3 16.533 5.389 34.911 1 57.85 ? N3 COD 403 A 1 
HETATM 4 C C4 COD . . . D 3 16.005 4.543 33.997 1 57.44 ? C4 COD 403 A 1 
HETATM 5 C C5 COD . . . D 3 15.573 3.212 34.42 1 57.76 ? C5 COD 403 A 1 
HETATM 6 C C6 COD . . . D 3 15.747 2.901 35.849 1 58.02 ? C6 COD 403 A 1 
HETATM 7 N N7 COD . . . D 3 15.378 1.7 36.336 1 64.57 ? N7 COD 403 A 1 
HETATM 8 N N8 COD . . . D 3 15.102 2.585 33.32 1 63.88 ? N8 COD 403 A 1 
HETATM 9 C C9 COD . . . D 3 15.23 3.439 32.272 1 62.6 ? C9 COD 403 A 1 
HETATM 10 N N10 COD . . . D 3 15.774 4.602 32.694 1 63 ? N10 COD 403 A 1 
HETATM 11 C C11 COD . . . D 3 16.086 5.812 31.898 1 64.93 ? C11 COD 403 A 1 
HETATM 12 C C12 COD . . . D 3 16.624 5.601 30.474 1 63.17 ? C12 COD 403 A 1 
HETATM 13 O O13 COD . . . D 3 18.048 5.461 30.422 1 60.36 ? O13 COD 403 A 1 
HETATM 14 C C14 COD . . . D 3 16.179 6.875 29.769 1 66.68 ? C14 COD 403 A 1 
HETATM 15 O O15 COD . . . D 3 17.28 7.785 29.576 1 60.76 ? O15 COD 403 A 1 
HETATM 16 C C16 COD . . . D 3 15.135 7.513 30.697 1 67.22 ? C16 COD 403 A 1 
HETATM 17 O O17 COD . . . D 3 14.908 6.586 31.76 1 64.96 ? O17 COD 403 A 1 
HETATM 18 C C18 COD . . . D 3 13.798 7.897 30.08 1 66.25 ? C18 COD 403 A 1 
HETATM 19 O O19 COD . . . D 3 13.989 8.542 28.832 1 65.06 ? O19 COD 403 A 1 
HETATM 20 P P20 COD . . . D 3 13.428 7.931 27.467 1 61.72 ? P20 COD 403 A 1 
HETATM 21 O O21 COD . . . D 3 13.206 6.459 27.7 1 62.93 ? O21 COD 403 A 1 
HETATM 22 O O22 COD . . . D 3 14.403 8.341 26.405 1 69.4 ? O22 COD 403 A 1 
HETATM 23 O O23 COD . . . D 3 12.089 8.771 27.219 1 57.54 ? O23 COD 403 A 1 
HETATM 24 P P24 COD . . . D 3 11.983 10.39 27.259 1 54.62 ? P24 COD 403 A 1 
HETATM 25 O O25 COD . . . D 3 11.667 10.901 25.888 1 59.59 ? O25 COD 403 A 1 
HETATM 26 O O26 COD . . . D 3 13.033 11.083 28.063 1 50.92 ? O26 COD 403 A 1 
HETATM 27 O O27 COD . . . D 3 10.621 10.587 28.097 1 60.73 ? O27 COD 403 A 1 
HETATM 28 C C28 COD . . . D 3 9.338 10.218 27.572 1 62.1 ? C28 COD 403 A 1 
HETATM 29 C C29 COD . . . D 3 8.306 9.844 28.643 1 60.49 ? C29 COD 403 A 1 
HETATM 30 C C30 COD . . . D 3 8.868 8.699 29.471 1 59.1 ? C30 COD 403 A 1 
HETATM 31 C C31 COD . . . D 3 8.054 11.068 29.528 1 63.46 ? C31 COD 403 A 1 
HETATM 32 C C32 COD . . . D 3 6.992 9.413 27.953 1 60.3 ? C32 COD 403 A 1 
HETATM 33 O O33 COD . . . D 3 7.082 8.044 27.515 1 59.73 ? O33 COD 403 A 1 
HETATM 34 C C34 COD . . . D 3 5.779 9.51 28.846 1 60.85 ? C34 COD 403 A 1 
HETATM 35 O O35 COD . . . D 3 5.517 8.586 29.59 1 59.16 ? O35 COD 403 A 1 
HETATM 36 N N36 COD . . . D 3 5 10.59 28.783 1 63.41 ? N36 COD 403 A 1 
HETATM 37 C C37 COD . . . D 3 3.742 10.656 29.541 1 64.17 ? C37 COD 403 A 1 
HETATM 38 C C38 COD . . . D 3 2.822 11.833 29.166 1 58.86 ? C38 COD 403 A 1 
HETATM 39 C C39 COD . . . D 3 1.943 11.532 27.961 1 50.82 ? C39 COD 403 A 1 
HETATM 40 O O40 COD . . . D 3 1.486 10.425 27.766 1 55.85 ? O40 COD 403 A 1 
HETATM 41 N N41 COD . . . D 3 1.737 12.511 27.097 1 49.87 ? N41 COD 403 A 1 
HETATM 42 C C42 COD . . . D 3 1.181 12.289 25.763 1 53.68 ? C42 COD 403 A 1 
HETATM 43 C C43 COD . . . D 3 2.18 12.702 24.671 1 52.94 ? C43 COD 403 A 1 
HETATM 44 S S44 COD . . . D 3 3.817 11.907 24.821 1 51.57 ? S44 COD 403 A 1 
#
_model_server_stats.io_time_ms              68 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           44 
#