data_6CY6
#
_model_server_result.job_id            pUxFrgnWJ2jUDA9RHlLz6w 
_model_server_result.datetime_utc      '2024-12-26 18:27:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6cy6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":216}' 
#
_entry.id    6CY6 
#
_exptl.entry_id    6CY6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6CY6 
_cell.length_a            107.499 
_cell.length_b            107.499 
_cell.length_c            65.021 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6CY6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        177 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 6 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4,5,6,7,8,9,10,11,12 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_765 -y+2,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 161.2485 93.096865 0 
3 'crystal symmetry operation' 3_675 -x+y+1,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 186.19373 0 
4 'crystal symmetry operation' 4_775 -x+2,-y+2,z -1 0 0 0 -1 0 0 0 1 107.499 186.19373 0 
5 'crystal symmetry operation' 5_565 y,-x+y+1,z 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 -53.7495 93.096865 0 
6 'crystal symmetry operation' 6_655 x-y+1,x,z 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 107.499 0 0 
7 'crystal symmetry operation' 7_558 y,x,-z+3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 195.063 
8 'crystal symmetry operation' 8_678 x-y+1,-y+2,-z+3 1 0 0 0 -1 0 0 0 -1 0 186.19373 195.063 
9 'crystal symmetry operation' 9_768 -x+2,-x+y+1,-z+3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 161.2485 93.096865 195.063 
10 'crystal symmetry operation' 10_778 -y+2,-x+2,-z+3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 107.499 186.19373 195.063 
11 'crystal symmetry operation' 11_658 -x+y+1,y,-z+3 -1 0 0 0 1 0 0 0 -1 107.499 0 195.063 
12 'crystal symmetry operation' 12_568 x,x-y+1,-z+3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -53.7495 93.096865 195.063 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 M N N 
? 6 O N N 
? 6 P N N 
? 6 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 36 A GLU 36 1_555 J NA NA . A NA 209 5_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? 
metalc ? metalc2 A O ASP 54 A ASP 54 1_555 J NA NA . A NA 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc3 A O GLU 57 A GLU 57 1_555 J NA NA . A NA 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc4 J NA NA . A NA 209 1_555 R O HOH . A HOH 321 6_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc5 J NA NA . A NA 209 1_555 R O HOH . A HOH 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 237 n n 
C1 H11 MPD sing 238 n n 
C1 H12 MPD sing 239 n n 
C1 H13 MPD sing 240 n n 
C2 O2 MPD sing 241 n n 
C2 CM MPD sing 242 n n 
C2 C3 MPD sing 243 n n 
O2 HO2 MPD sing 244 n n 
CM HM1 MPD sing 245 n n 
CM HM2 MPD sing 246 n n 
CM HM3 MPD sing 247 n n 
C3 C4 MPD sing 248 n n 
C3 H31 MPD sing 249 n n 
C3 H32 MPD sing 250 n n 
C4 O4 MPD sing 251 n n 
C4 C5 MPD sing 252 n n 
C4 H4 MPD sing 253 n n 
O4 HO4 MPD sing 254 n n 
C5 H51 MPD sing 255 n n 
C5 H52 MPD sing 256 n n 
C5 H53 MPD sing 257 n n 
#
_atom_sites.entry_id                     6CY6 
_atom_sites.fract_transf_matrix[1][1]    0.009302 
_atom_sites.fract_transf_matrix[1][2]    0.005371 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010742 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01538 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 201 1 CL CL . 
C 2 CL A 1 202 2 CL CL . 
D 2 CL A 1 203 3 CL CL . 
E 2 CL A 1 204 4 CL CL . 
F 2 CL A 1 205 5 CL CL . 
G 2 CL A 1 206 6 CL CL . 
H 2 CL A 1 207 7 CL CL . 
I 2 CL A 1 208 8 CL CL . 
J 3 NA A 1 209 9 NA NA . 
K 4 TRS A 1 210 10 TRS TRS . 
L 5 MRD A 1 211 11 MRD MPD . 
M 6 MPD A 1 212 12 MPD MPD . 
N 5 MRD A 1 213 13 MRD MPD . 
O 6 MPD A 1 214 14 MPD MPD . 
P 6 MPD A 1 215 15 MPD MPD . 
Q 6 MPD A 1 216 16 MPD MPD . 
R 7 HOH A 1 301 5 HOH HOH . 
R 7 HOH A 2 302 60 HOH HOH . 
R 7 HOH A 3 303 25 HOH HOH . 
R 7 HOH A 4 304 73 HOH HOH . 
R 7 HOH A 5 305 100 HOH HOH . 
R 7 HOH A 6 306 57 HOH HOH . 
R 7 HOH A 7 307 36 HOH HOH . 
R 7 HOH A 8 308 51 HOH HOH . 
R 7 HOH A 9 309 83 HOH HOH . 
R 7 HOH A 10 310 80 HOH HOH . 
R 7 HOH A 11 311 78 HOH HOH . 
R 7 HOH A 12 312 106 HOH HOH . 
R 7 HOH A 13 313 70 HOH HOH . 
R 7 HOH A 14 314 81 HOH HOH . 
R 7 HOH A 15 315 84 HOH HOH . 
R 7 HOH A 16 316 76 HOH HOH . 
R 7 HOH A 17 317 39 HOH HOH . 
R 7 HOH A 18 318 43 HOH HOH . 
R 7 HOH A 19 319 88 HOH HOH . 
R 7 HOH A 20 320 18 HOH HOH . 
R 7 HOH A 21 321 31 HOH HOH . 
R 7 HOH A 22 322 104 HOH HOH . 
R 7 HOH A 23 323 32 HOH HOH . 
R 7 HOH A 24 324 101 HOH HOH . 
R 7 HOH A 25 325 11 HOH HOH . 
R 7 HOH A 26 326 6 HOH HOH . 
R 7 HOH A 27 327 105 HOH HOH . 
R 7 HOH A 28 328 96 HOH HOH . 
R 7 HOH A 29 329 27 HOH HOH . 
R 7 HOH A 30 330 2 HOH HOH . 
R 7 HOH A 31 331 33 HOH HOH . 
R 7 HOH A 32 332 8 HOH HOH . 
R 7 HOH A 33 333 28 HOH HOH . 
R 7 HOH A 34 334 30 HOH HOH . 
R 7 HOH A 35 335 13 HOH HOH . 
R 7 HOH A 36 336 97 HOH HOH . 
R 7 HOH A 37 337 20 HOH HOH . 
R 7 HOH A 38 338 59 HOH HOH . 
R 7 HOH A 39 339 53 HOH HOH . 
R 7 HOH A 40 340 4 HOH HOH . 
R 7 HOH A 41 341 42 HOH HOH . 
R 7 HOH A 42 342 40 HOH HOH . 
R 7 HOH A 43 343 9 HOH HOH . 
R 7 HOH A 44 344 23 HOH HOH . 
R 7 HOH A 45 345 44 HOH HOH . 
R 7 HOH A 46 346 21 HOH HOH . 
R 7 HOH A 47 347 95 HOH HOH . 
R 7 HOH A 48 348 19 HOH HOH . 
R 7 HOH A 49 349 85 HOH HOH . 
R 7 HOH A 50 350 48 HOH HOH . 
R 7 HOH A 51 351 24 HOH HOH . 
R 7 HOH A 52 352 63 HOH HOH . 
R 7 HOH A 53 353 3 HOH HOH . 
R 7 HOH A 54 354 47 HOH HOH . 
R 7 HOH A 55 355 37 HOH HOH . 
R 7 HOH A 56 356 45 HOH HOH . 
R 7 HOH A 57 357 92 HOH HOH . 
R 7 HOH A 58 358 75 HOH HOH . 
R 7 HOH A 59 359 17 HOH HOH . 
R 7 HOH A 60 360 66 HOH HOH . 
R 7 HOH A 61 361 26 HOH HOH . 
R 7 HOH A 62 362 61 HOH HOH . 
R 7 HOH A 63 363 34 HOH HOH . 
R 7 HOH A 64 364 7 HOH HOH . 
R 7 HOH A 65 365 54 HOH HOH . 
R 7 HOH A 66 366 46 HOH HOH . 
R 7 HOH A 67 367 1 HOH HOH . 
R 7 HOH A 68 368 14 HOH HOH . 
R 7 HOH A 69 369 16 HOH HOH . 
R 7 HOH A 70 370 35 HOH HOH . 
R 7 HOH A 71 371 22 HOH HOH . 
R 7 HOH A 72 372 12 HOH HOH . 
R 7 HOH A 73 373 15 HOH HOH . 
R 7 HOH A 74 374 10 HOH HOH . 
R 7 HOH A 75 375 52 HOH HOH . 
R 7 HOH A 76 376 62 HOH HOH . 
R 7 HOH A 77 377 79 HOH HOH . 
R 7 HOH A 78 378 49 HOH HOH . 
R 7 HOH A 79 379 107 HOH HOH . 
R 7 HOH A 80 380 86 HOH HOH . 
R 7 HOH A 81 381 38 HOH HOH . 
R 7 HOH A 82 382 65 HOH HOH . 
R 7 HOH A 83 383 98 HOH HOH . 
R 7 HOH A 84 384 68 HOH HOH . 
R 7 HOH A 85 385 103 HOH HOH . 
R 7 HOH A 86 386 93 HOH HOH . 
R 7 HOH A 87 387 50 HOH HOH . 
R 7 HOH A 88 388 29 HOH HOH . 
R 7 HOH A 89 389 67 HOH HOH . 
R 7 HOH A 90 390 91 HOH HOH . 
R 7 HOH A 91 391 71 HOH HOH . 
R 7 HOH A 92 392 108 HOH HOH . 
R 7 HOH A 93 393 89 HOH HOH . 
R 7 HOH A 94 394 90 HOH HOH . 
R 7 HOH A 95 395 77 HOH HOH . 
R 7 HOH A 96 396 74 HOH HOH . 
R 7 HOH A 97 397 72 HOH HOH . 
R 7 HOH A 98 398 99 HOH HOH . 
R 7 HOH A 99 399 41 HOH HOH . 
R 7 HOH A 100 400 69 HOH HOH . 
R 7 HOH A 101 401 55 HOH HOH . 
R 7 HOH A 102 402 102 HOH HOH . 
R 7 HOH A 103 403 82 HOH HOH . 
R 7 HOH A 104 404 58 HOH HOH . 
R 7 HOH A 105 405 64 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . Q 6 68.219 56.847 85.109 1 56.87 ? C1 MPD 216 A 1 
HETATM 2 C C2 MPD . . . Q 6 68.166 56.756 86.631 1 59.26 ? C2 MPD 216 A 1 
HETATM 3 O O2 MPD . . . Q 6 69.039 57.74 87.173 1 75.32 ? O2 MPD 216 A 1 
HETATM 4 C CM MPD . . . Q 6 66.779 57.129 87.114 1 62.89 ? CM MPD 216 A 1 
HETATM 5 C C3 MPD . . . Q 6 68.675 55.405 87.154 1 62.23 ? C3 MPD 216 A 1 
HETATM 6 C C4 MPD . . . Q 6 67.627 54.283 87.14 1 61.71 ? C4 MPD 216 A 1 
HETATM 7 O O4 MPD . . . Q 6 67.305 53.872 85.796 1 71.44 ? O4 MPD 216 A 1 
HETATM 8 C C5 MPD . . . Q 6 68.036 53.057 87.958 1 52.47 ? C5 MPD 216 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#