data_6CY7 # _model_server_result.job_id 102yDIlFL_dgMZP5rjL1Ww _model_server_result.datetime_utc '2024-11-22 16:46:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cy7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6CY7 # _exptl.entry_id 6CY7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CY7 _cell.length_a 111.457 _cell.length_b 111.457 _cell.length_c 35.424 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CY7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_643 y+1,x-1,-z-2 0 1 0 1 0 0 0 0 -1 111.457 -111.457 -70.848 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 260 n y N1 C5 IMD sing 261 n y N1 HN1 IMD sing 262 n n C2 N3 IMD doub 263 n y C2 H2 IMD sing 264 n n N3 C4 IMD sing 265 n y N3 HN3 IMD sing 266 n n C4 C5 IMD doub 267 n y C4 H4 IMD sing 268 n n C5 H5 IMD sing 269 n n # _atom_sites.entry_id 6CY7 _atom_sites.fract_transf_matrix[1][1] 0.008972 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008972 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028229 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2BA A 1 401 401 2BA SED . C 3 IMD A 1 402 403 IMD IMD . D 4 GOL A 1 403 402 GOL GOL . E 5 HOH A 1 501 19 HOH HOH . E 5 HOH A 2 502 5 HOH HOH . E 5 HOH A 3 503 58 HOH HOH . E 5 HOH A 4 504 63 HOH HOH . E 5 HOH A 5 505 27 HOH HOH . E 5 HOH A 6 506 14 HOH HOH . E 5 HOH A 7 507 6 HOH HOH . E 5 HOH A 8 508 12 HOH HOH . E 5 HOH A 9 509 61 HOH HOH . E 5 HOH A 10 510 28 HOH HOH . E 5 HOH A 11 511 31 HOH HOH . E 5 HOH A 12 512 11 HOH HOH . E 5 HOH A 13 513 10 HOH HOH . E 5 HOH A 14 514 1 HOH HOH . E 5 HOH A 15 515 30 HOH HOH . E 5 HOH A 16 516 26 HOH HOH . E 5 HOH A 17 517 54 HOH HOH . E 5 HOH A 18 518 22 HOH HOH . E 5 HOH A 19 519 4 HOH HOH . E 5 HOH A 20 520 2 HOH HOH . E 5 HOH A 21 521 34 HOH HOH . E 5 HOH A 22 522 46 HOH HOH . E 5 HOH A 23 523 65 HOH HOH . E 5 HOH A 24 524 13 HOH HOH . E 5 HOH A 25 525 25 HOH HOH . E 5 HOH A 26 526 9 HOH HOH . E 5 HOH A 27 527 7 HOH HOH . E 5 HOH A 28 528 20 HOH HOH . E 5 HOH A 29 529 44 HOH HOH . E 5 HOH A 30 530 64 HOH HOH . E 5 HOH A 31 531 16 HOH HOH . E 5 HOH A 32 532 52 HOH HOH . E 5 HOH A 33 533 24 HOH HOH . E 5 HOH A 34 534 38 HOH HOH . E 5 HOH A 35 535 47 HOH HOH . E 5 HOH A 36 536 48 HOH HOH . E 5 HOH A 37 537 60 HOH HOH . E 5 HOH A 38 538 62 HOH HOH . E 5 HOH A 39 539 42 HOH HOH . E 5 HOH A 40 540 8 HOH HOH . E 5 HOH A 41 541 66 HOH HOH . E 5 HOH A 42 542 18 HOH HOH . E 5 HOH A 43 543 33 HOH HOH . E 5 HOH A 44 544 37 HOH HOH . E 5 HOH A 45 545 49 HOH HOH . E 5 HOH A 46 546 40 HOH HOH . E 5 HOH A 47 547 68 HOH HOH . E 5 HOH A 48 548 39 HOH HOH . E 5 HOH A 49 549 17 HOH HOH . E 5 HOH A 50 550 43 HOH HOH . E 5 HOH A 51 551 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 IMD . . . C 3 136.179 24.724 -17.713 0.5 31.87 ? C2 IMD 402 A 1 HETATM 2 N N3 IMD . . . C 3 136.127 25.872 -18.36 0.5 28.44 ? N3 IMD 402 A 1 HETATM 3 C C4 IMD . . . C 3 137.266 26.567 -18.121 0.5 27.32 ? C4 IMD 402 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 3 #