data_6CYI # _model_server_result.job_id DqUEO56INUCsNspyrevwkA _model_server_result.datetime_utc '2024-12-01 12:16:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cyi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 6CYI # _exptl.entry_id 6CYI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 324.293 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-N-(2-HYDROXYL)ETHYL CARBOXYAMIDO ADENOSINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CYI _cell.length_a 89.055 _cell.length_b 100.209 _cell.length_c 63.433 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CYI _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H16 N6 O5' _chem_comp.formula_weight 324.293 _chem_comp.id N5O _chem_comp.mon_nstd_flag . _chem_comp.name "5'-N-(2-HYDROXYL)ETHYL CARBOXYAMIDO ADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (2S,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXY-N-(2-HYDROXYETHYL)TETRAHYDROFURAN-2-CARBOXAMIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O53 C52 N5O sing 237 n n O53 HO53 N5O sing 238 n n C52 C51 N5O sing 239 n n C52 H521 N5O sing 240 n n C52 H522 N5O sing 241 n n C51 N5' N5O sing 242 n n C51 H511 N5O sing 243 n n C51 H512 N5O sing 244 n n N5' C5' N5O sing 245 n n N5' HN5' N5O sing 246 n n C5' O5' N5O doub 247 n n C5' C4' N5O sing 248 n n C4' O4' N5O sing 249 n n C4' C3' N5O sing 250 n n C4' H4' N5O sing 251 n n O4' C1' N5O sing 252 n n C3' O3' N5O sing 253 n n C3' C2' N5O sing 254 n n C3' H3' N5O sing 255 n n O3' HO3' N5O sing 256 n n C2' O2' N5O sing 257 n n C2' C1' N5O sing 258 n n C2' H2' N5O sing 259 n n O2' HO2' N5O sing 260 n n C1' N9 N5O sing 261 n n C1' H1' N5O sing 262 n n N9 C8 N5O sing 263 n y N9 C4 N5O sing 264 n y C8 N7 N5O doub 265 n y C8 H8 N5O sing 266 n n N7 C5 N5O sing 267 n y C5 C4 N5O doub 268 n y C5 C6 N5O sing 269 n y C4 N3 N5O sing 270 n y N3 C2 N5O doub 271 n y C2 N1 N5O sing 272 n y C2 H2 N5O sing 273 n n N1 C6 N5O doub 274 n y C6 N6 N5O sing 275 n n N6 HN61 N5O sing 276 n n N6 HN62 N5O sing 277 n n # _atom_sites.entry_id 6CYI _atom_sites.fract_transf_matrix[1][1] 0.011229 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009979 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015765 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PGE A 1 401 2 PGE PG4 . C 3 PG4 A 1 402 3 PG4 PG4 . D 2 PGE A 1 403 4 PGE PG4 . E 4 N5O A 1 404 1 N5O N5O . F 5 HOH A 1 501 81 HOH HOH . F 5 HOH A 2 502 78 HOH HOH . F 5 HOH A 3 503 89 HOH HOH . F 5 HOH A 4 504 12 HOH HOH . F 5 HOH A 5 505 80 HOH HOH . F 5 HOH A 6 506 1 HOH HOH . F 5 HOH A 7 507 91 HOH HOH . F 5 HOH A 8 508 25 HOH HOH . F 5 HOH A 9 509 74 HOH HOH . F 5 HOH A 10 510 99 HOH HOH . F 5 HOH A 11 511 64 HOH HOH . F 5 HOH A 12 512 48 HOH HOH . F 5 HOH A 13 513 87 HOH HOH . F 5 HOH A 14 514 3 HOH HOH . F 5 HOH A 15 515 62 HOH HOH . F 5 HOH A 16 516 32 HOH HOH . F 5 HOH A 17 517 21 HOH HOH . F 5 HOH A 18 518 47 HOH HOH . F 5 HOH A 19 519 9 HOH HOH . F 5 HOH A 20 520 17 HOH HOH . F 5 HOH A 21 521 72 HOH HOH . F 5 HOH A 22 522 92 HOH HOH . F 5 HOH A 23 523 103 HOH HOH . F 5 HOH A 24 524 14 HOH HOH . F 5 HOH A 25 525 10 HOH HOH . F 5 HOH A 26 526 7 HOH HOH . F 5 HOH A 27 527 8 HOH HOH . F 5 HOH A 28 528 27 HOH HOH . F 5 HOH A 29 529 4 HOH HOH . F 5 HOH A 30 530 11 HOH HOH . F 5 HOH A 31 531 19 HOH HOH . F 5 HOH A 32 532 5 HOH HOH . F 5 HOH A 33 533 20 HOH HOH . F 5 HOH A 34 534 49 HOH HOH . F 5 HOH A 35 535 98 HOH HOH . F 5 HOH A 36 536 15 HOH HOH . F 5 HOH A 37 537 22 HOH HOH . F 5 HOH A 38 538 29 HOH HOH . F 5 HOH A 39 539 35 HOH HOH . F 5 HOH A 40 540 30 HOH HOH . F 5 HOH A 41 541 65 HOH HOH . F 5 HOH A 42 542 34 HOH HOH . F 5 HOH A 43 543 6 HOH HOH . F 5 HOH A 44 544 26 HOH HOH . F 5 HOH A 45 545 28 HOH HOH . F 5 HOH A 46 546 101 HOH HOH . F 5 HOH A 47 547 82 HOH HOH . F 5 HOH A 48 548 33 HOH HOH . F 5 HOH A 49 549 24 HOH HOH . F 5 HOH A 50 550 70 HOH HOH . F 5 HOH A 51 551 18 HOH HOH . F 5 HOH A 52 552 79 HOH HOH . F 5 HOH A 53 553 2 HOH HOH . F 5 HOH A 54 554 13 HOH HOH . F 5 HOH A 55 555 38 HOH HOH . F 5 HOH A 56 556 36 HOH HOH . F 5 HOH A 57 557 45 HOH HOH . F 5 HOH A 58 558 16 HOH HOH . F 5 HOH A 59 559 39 HOH HOH . F 5 HOH A 60 560 73 HOH HOH . F 5 HOH A 61 561 83 HOH HOH . F 5 HOH A 62 562 100 HOH HOH . F 5 HOH A 63 563 46 HOH HOH . F 5 HOH A 64 564 68 HOH HOH . F 5 HOH A 65 565 105 HOH HOH . F 5 HOH A 66 566 53 HOH HOH . F 5 HOH A 67 567 43 HOH HOH . F 5 HOH A 68 568 56 HOH HOH . F 5 HOH A 69 569 40 HOH HOH . F 5 HOH A 70 570 71 HOH HOH . F 5 HOH A 71 571 77 HOH HOH . F 5 HOH A 72 572 93 HOH HOH . F 5 HOH A 73 573 76 HOH HOH . F 5 HOH A 74 574 31 HOH HOH . F 5 HOH A 75 575 23 HOH HOH . F 5 HOH A 76 576 104 HOH HOH . F 5 HOH A 77 577 58 HOH HOH . F 5 HOH A 78 578 41 HOH HOH . F 5 HOH A 79 579 86 HOH HOH . F 5 HOH A 80 580 52 HOH HOH . F 5 HOH A 81 581 63 HOH HOH . F 5 HOH A 82 582 57 HOH HOH . F 5 HOH A 83 583 75 HOH HOH . F 5 HOH A 84 584 67 HOH HOH . F 5 HOH A 85 585 102 HOH HOH . F 5 HOH A 86 586 61 HOH HOH . F 5 HOH A 87 587 88 HOH HOH . F 5 HOH A 88 588 51 HOH HOH . F 5 HOH A 89 589 69 HOH HOH . F 5 HOH A 90 590 85 HOH HOH . F 5 HOH A 91 591 50 HOH HOH . F 5 HOH A 92 592 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O53 N5O . . . E 4 17.733 38.834 -10.968 1 43.24 ? O53 N5O 404 A 1 HETATM 2 C C52 N5O . . . E 4 16.789 38.341 -10.075 1 39.03 ? C52 N5O 404 A 1 HETATM 3 C C51 N5O . . . E 4 17.499 37.757 -8.841 1 35.53 ? C51 N5O 404 A 1 HETATM 4 N N5' N5O . . . E 4 18.592 36.984 -9.265 1 36.99 ? N5' N5O 404 A 1 HETATM 5 C C5' N5O . . . E 4 18.399 35.53 -9.476 1 37.56 ? C5' N5O 404 A 1 HETATM 6 O O5' N5O . . . E 4 17.272 34.992 -9.263 1 38.78 ? O5' N5O 404 A 1 HETATM 7 C C4' N5O . . . E 4 19.561 34.687 -9.922 1 42.82 ? C4' N5O 404 A 1 HETATM 8 O O4' N5O . . . E 4 19.941 33.976 -8.872 1 38.74 ? O4' N5O 404 A 1 HETATM 9 C C3' N5O . . . E 4 19.001 33.682 -10.909 1 37.52 ? C3' N5O 404 A 1 HETATM 10 O O3' N5O . . . E 4 19.158 34.109 -12.182 1 42.71 ? O3' N5O 404 A 1 HETATM 11 C C2' N5O . . . E 4 19.897 32.44 -10.632 1 44.4 ? C2' N5O 404 A 1 HETATM 12 O O2' N5O . . . E 4 21.106 32.568 -11.508 1 41.47 ? O2' N5O 404 A 1 HETATM 13 C C1' N5O . . . E 4 20.169 32.458 -9.384 1 38.98 ? C1' N5O 404 A 1 HETATM 14 N N9 N5O . . . E 4 19.223 31.656 -8.719 1 35.39 ? N9 N5O 404 A 1 HETATM 15 C C8 N5O . . . E 4 18.006 32.006 -8.226 1 35.13 ? C8 N5O 404 A 1 HETATM 16 N N7 N5O . . . E 4 17.435 30.902 -7.671 1 35.29 ? N7 N5O 404 A 1 HETATM 17 C C5 N5O . . . E 4 18.299 29.873 -7.844 1 36.42 ? C5 N5O 404 A 1 HETATM 18 C C4 N5O . . . E 4 19.4 30.324 -8.485 1 35.97 ? C4 N5O 404 A 1 HETATM 19 N N3 N5O . . . E 4 20.429 29.473 -8.776 1 35.18 ? N3 N5O 404 A 1 HETATM 20 C C2 N5O . . . E 4 20.336 28.171 -8.415 1 36.36 ? C2 N5O 404 A 1 HETATM 21 N N1 N5O . . . E 4 19.215 27.704 -7.756 1 30.7 ? N1 N5O 404 A 1 HETATM 22 C C6 N5O . . . E 4 18.207 28.562 -7.486 1 34.3 ? C6 N5O 404 A 1 HETATM 23 N N6 N5O . . . E 4 17.325 27.678 -6.877 1 33.5 ? N6 N5O 404 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #