data_6CYM # _model_server_result.job_id A_hln9qUagCcl8-NoNyvZA _model_server_result.datetime_utc '2024-12-01 23:47:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cym # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":300}' # _entry.id 6CYM # _exptl.entry_id 6CYM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 152.147 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-methoxybenzoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CYM _cell.length_a 91.67 _cell.length_b 99.73 _cell.length_c 146.01 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CYM _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,J 1 1 C,D,H,I,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 42 1_555 A SG CYS 44 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 119 A CYS 133 1_555 B SG CYS 3 B CYS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf3 A SG CYS 173 A CYS 187 1_555 A SG CYS 187 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 A SG CYS 201 A CYS 215 1_555 A SG CYS 231 A CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf5 C SG CYS 28 C CYS 42 1_555 C SG CYS 44 C CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 C SG CYS 119 C CYS 133 1_555 D SG CYS 3 D CYS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf7 C SG CYS 173 C CYS 187 1_555 C SG CYS 187 C CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf8 C SG CYS 201 C CYS 215 1_555 C SG CYS 231 C CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? covale ? covale1 A ND2 ASN 53 A ASN 67 1_555 F C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale2 A OG SER 205 A SER 219 1_555 E C8 71F . A 71F 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.521 ? covale ? covale3 C OG SER 205 C SER 219 1_555 H C8 71F . C 71F 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.559 sing metalc ? metalc1 A O ARG 233 A ARG 247 1_555 G NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? metalc ? metalc2 A O LYS 236 A LYS 250 1_555 G NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc3 G NA NA . A NA 302 1_555 J O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.159 ? metalc ? metalc4 G NA NA . A NA 302 1_555 J O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc5 G NA NA . A NA 302 1_555 J O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc6 C O ARG 233 C ARG 247 1_555 I NA NA . C NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc7 C O LYS 236 C LYS 250 1_555 I NA NA . C NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? # _chem_comp.formula 'C8 H8 O3' _chem_comp.formula_weight 152.147 _chem_comp.id 71F _chem_comp.mon_nstd_flag . _chem_comp.name '2-methoxybenzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 71F sing 1 n n O1 C2 71F sing 2 n n C7 C2 71F doub 3 n y C7 C6 71F sing 4 n y C2 C3 71F sing 5 n y C6 C5 71F doub 6 n y C3 C8 71F sing 7 n n C3 C4 71F doub 8 n y O9 C8 71F doub 9 n n C8 O11 71F sing 10 n n C5 C4 71F sing 11 n y C1 H1 71F sing 12 n n C1 H2 71F sing 13 n n C1 H3 71F sing 14 n n C4 H4 71F sing 15 n n C5 H5 71F sing 16 n n C6 H6 71F sing 17 n n C7 H7 71F sing 18 n n O11 H8 71F sing 19 n n # _atom_sites.entry_id 6CYM _atom_sites.fract_transf_matrix[1][1] 0.010909 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010027 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006849 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 71F A 1 300 300 71F MBA . F 4 NAG A 1 301 301 NAG NAG . G 5 NA A 1 302 302 NA NA . H 3 71F C 1 301 300 71F MBA . I 5 NA C 1 302 302 NA NA . J 6 HOH A 1 401 21 HOH HOH . J 6 HOH A 2 402 22 HOH HOH . J 6 HOH A 3 403 8 HOH HOH . J 6 HOH A 4 404 1 HOH HOH . J 6 HOH A 5 405 25 HOH HOH . J 6 HOH A 6 406 20 HOH HOH . J 6 HOH A 7 407 7 HOH HOH . J 6 HOH A 8 408 16 HOH HOH . J 6 HOH A 9 409 9 HOH HOH . J 6 HOH A 10 410 24 HOH HOH . J 6 HOH A 11 411 19 HOH HOH . J 6 HOH A 12 412 26 HOH HOH . J 6 HOH A 13 413 23 HOH HOH . J 6 HOH A 14 414 11 HOH HOH . J 6 HOH A 15 415 2 HOH HOH . K 6 HOH C 1 401 17 HOH HOH . K 6 HOH C 2 402 18 HOH HOH . K 6 HOH C 3 403 28 HOH HOH . K 6 HOH C 4 404 14 HOH HOH . K 6 HOH C 5 405 10 HOH HOH . K 6 HOH C 6 406 27 HOH HOH . L 6 HOH D 1 101 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 71F . . . E 3 -8.664 33.153 -2.992 1 93.05 ? C1 71F 300 A 1 HETATM 2 O O1 71F . . . E 3 -7.39 32.483 -2.998 1 91.37 ? O1 71F 300 A 1 HETATM 3 C C2 71F . . . E 3 -6.536 32.411 -1.918 1 87.15 ? C2 71F 300 A 1 HETATM 4 C C3 71F . . . E 3 -5.297 31.566 -1.979 1 86.54 ? C3 71F 300 A 1 HETATM 5 C C4 71F . . . E 3 -4.51 31.549 -0.85 1 87 ? C4 71F 300 A 1 HETATM 6 C C5 71F . . . E 3 -4.894 32.231 0.311 1 86.19 ? C5 71F 300 A 1 HETATM 7 C C6 71F . . . E 3 -6.032 33.018 0.388 1 85.01 ? C6 71F 300 A 1 HETATM 8 C C7 71F . . . E 3 -6.841 33.098 -0.732 1 85.23 ? C7 71F 300 A 1 HETATM 9 C C8 71F . . . E 3 -4.77 30.809 -3.157 1 87.71 ? C8 71F 300 A 1 HETATM 10 O O9 71F . . . E 3 -5.033 31.124 -4.318 1 92.9 ? O9 71F 300 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #