data_6CYY # _model_server_result.job_id MCgX93E1b3XrB3_RAFGxCw _model_server_result.datetime_utc '2024-11-28 22:33:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6cyy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 6CYY # _exptl.entry_id 6CYY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CYY _cell.length_a 144.871 _cell.length_b 144.871 _cell.length_c 97.265 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CYY _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -48.6325 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 306 A CYS 363 1_555 D FE4 SF4 . A SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc2 A SG CYS 390 A CYS 447 1_555 D FE1 SF4 . A SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc3 A SG CYS 393 A CYS 450 1_555 D FE2 SF4 . A SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc4 A SG CYS 398 A CYS 455 1_555 D FE3 SF4 . A SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc5 B SG CYS 306 B CYS 363 1_555 F FE3 SF4 . B SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc6 B SG CYS 390 B CYS 447 1_555 F FE2 SF4 . B SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc7 B SG CYS 393 B CYS 450 1_555 F FE1 SF4 . B SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc8 B SG CYS 398 B CYS 455 1_555 F FE4 SF4 . B SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 6CYY _atom_sites.fract_transf_matrix[1][1] 0.006903 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006903 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010281 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 COA A 1 501 2 COA COA . D 3 SF4 A 1 502 1 SF4 SF4 . E 2 COA B 1 501 1 COA COA . F 3 SF4 B 1 502 2 SF4 SF4 . G 4 HOH A 1 601 1 HOH HOH . G 4 HOH A 2 602 3 HOH HOH . G 4 HOH A 3 603 4 HOH HOH . H 4 HOH B 1 601 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . E 2 -44.046 16.122 -4.098 1 69.81 ? N1A COA 501 B 1 HETATM 2 C C2A COA . . . E 2 -44.308 16.361 -5.381 1 70.27 ? C2A COA 501 B 1 HETATM 3 N N3A COA . . . E 2 -44.779 17.465 -5.939 1 66.6 ? N3A COA 501 B 1 HETATM 4 C C4A COA . . . E 2 -45.024 18.462 -5.042 1 63.61 ? C4A COA 501 B 1 HETATM 5 C C5A COA . . . E 2 -44.8 18.351 -3.659 1 65.71 ? C5A COA 501 B 1 HETATM 6 C C6A COA . . . E 2 -44.291 17.12 -3.207 1 67.15 ? C6A COA 501 B 1 HETATM 7 N N6A COA . . . E 2 -44.033 16.898 -1.876 1 68.85 ? N6A COA 501 B 1 HETATM 8 N N7A COA . . . E 2 -45.148 19.543 -3.008 1 65.92 ? N7A COA 501 B 1 HETATM 9 C C8A COA . . . E 2 -45.571 20.338 -4.013 1 66.21 ? C8A COA 501 B 1 HETATM 10 N N9A COA . . . E 2 -45.516 19.735 -5.236 1 66.01 ? N9A COA 501 B 1 HETATM 11 C C1B COA . . . E 2 -45.888 20.299 -6.561 1 69.32 ? C1B COA 501 B 1 HETATM 12 C C2B COA . . . E 2 -47.414 20.202 -6.787 1 69.48 ? C2B COA 501 B 1 HETATM 13 O O2B COA . . . E 2 -47.786 18.96 -7.283 1 70.91 ? O2B COA 501 B 1 HETATM 14 C C3B COA . . . E 2 -47.541 21.283 -7.887 1 67.17 ? C3B COA 501 B 1 HETATM 15 O O3B COA . . . E 2 -47.33 20.682 -9.183 1 68.59 ? O3B COA 501 B 1 HETATM 16 P P3B COA . . . E 2 -48.297 21.361 -10.268 1 68.23 ? P3B COA 501 B 1 HETATM 17 O O7A COA . . . E 2 -47.941 22.795 -10.46 1 71.75 ? O7A COA 501 B 1 HETATM 18 O O8A COA . . . E 2 -48.159 20.655 -11.613 1 72.47 -1 O8A COA 501 B 1 HETATM 19 O O9A COA . . . E 2 -49.743 21.253 -9.836 1 64.8 -1 O9A COA 501 B 1 HETATM 20 C C4B COA . . . E 2 -46.389 22.292 -7.578 1 70.12 ? C4B COA 501 B 1 HETATM 21 O O4B COA . . . E 2 -45.562 21.666 -6.583 1 64.82 ? O4B COA 501 B 1 HETATM 22 C C5B COA . . . E 2 -46.99 23.56 -7.053 1 72.59 ? C5B COA 501 B 1 HETATM 23 O O5B COA . . . E 2 -47.826 23.241 -5.977 1 75.4 ? O5B COA 501 B 1 HETATM 24 P P1A COA . . . E 2 -47.612 23.93 -4.52 1 73.41 ? P1A COA 501 B 1 HETATM 25 O O1A COA . . . E 2 -46.288 23.507 -4.01 1 73.18 ? O1A COA 501 B 1 HETATM 26 O O2A COA . . . E 2 -48.838 23.873 -3.637 1 80.03 -1 O2A COA 501 B 1 HETATM 27 O O3A COA . . . E 2 -47.347 25.551 -4.837 1 69.18 ? O3A COA 501 B 1 HETATM 28 P P2A COA . . . E 2 -47.749 26.915 -4.128 1 71.71 ? P2A COA 501 B 1 HETATM 29 O O4A COA . . . E 2 -46.838 27.97 -4.598 1 67.96 ? O4A COA 501 B 1 HETATM 30 O O5A COA . . . E 2 -49.243 27.145 -4.042 1 79.62 -1 O5A COA 501 B 1 HETATM 31 O O6A COA . . . E 2 -47.306 26.772 -2.6 1 72.68 ? O6A COA 501 B 1 HETATM 32 C CBP COA . . . E 2 -45.914 26.299 -0.742 1 68.11 ? CBP COA 501 B 1 HETATM 33 C CCP COA . . . E 2 -45.991 26.693 -2.208 1 69.13 ? CCP COA 501 B 1 HETATM 34 C CDP COA . . . E 2 -44.467 26.32 -0.306 1 65.61 ? CDP COA 501 B 1 HETATM 35 C CEP COA . . . E 2 -46.724 27.287 0.077 1 64.69 ? CEP COA 501 B 1 HETATM 36 C CAP COA . . . E 2 -46.523 24.881 -0.648 1 71.09 ? CAP COA 501 B 1 HETATM 37 O OAP COA . . . E 2 -45.834 23.968 -1.445 1 69.96 ? OAP COA 501 B 1 HETATM 38 C C9P COA . . . E 2 -46.552 24.291 0.777 1 78.19 ? C9P COA 501 B 1 HETATM 39 O O9P COA . . . E 2 -47.322 24.677 1.645 1 80.89 ? O9P COA 501 B 1 HETATM 40 N N8P COA . . . E 2 -45.704 23.294 1.031 1 81.29 ? N8P COA 501 B 1 HETATM 41 C C7P COA . . . E 2 -45.633 22.622 2.33 1 81.95 ? C7P COA 501 B 1 HETATM 42 C C6P COA . . . E 2 -44.912 23.484 3.363 1 86.21 ? C6P COA 501 B 1 HETATM 43 C C5P COA . . . E 2 -43.424 23.349 3.269 1 91.36 ? C5P COA 501 B 1 HETATM 44 O O5P COA . . . E 2 -42.829 22.29 3.067 1 89.79 ? O5P COA 501 B 1 HETATM 45 N N4P COA . . . E 2 -42.746 24.478 3.42 1 93.86 ? N4P COA 501 B 1 HETATM 46 C C3P COA . . . E 2 -41.291 24.563 3.353 1 95.19 ? C3P COA 501 B 1 HETATM 47 C C2P COA . . . E 2 -40.888 24.797 1.905 1 96.24 ? C2P COA 501 B 1 HETATM 48 S S1P COA . . . E 2 -39.309 25.7 1.865 1 97.24 ? S1P COA 501 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #