data_6CZH # _model_server_result.job_id IUqH5REajsF8Ghq748GJHw _model_server_result.datetime_utc '2025-07-05 12:05:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6czh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 6CZH # _exptl.entry_id 6CZH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 252.217 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2,3-dimethyl-3,5-dihydro-4H-imidazol-4-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6CZH _cell.length_a 48.061 _cell.length_b 59.382 _cell.length_c 72.836 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6CZH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C12 H10 F2 N2 O2' _chem_comp.formula_weight 252.217 _chem_comp.id 38E _chem_comp.mon_nstd_flag . _chem_comp.name (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2,3-dimethyl-3,5-dihydro-4H-imidazol-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C9 38E doub 1 n n F C 38E sing 2 n n C5 C 38E doub 3 n y C5 C4 38E sing 4 n y C6 C4 38E sing 5 n n C6 C7 38E doub 6 z n C9 C7 38E sing 7 n n C9 N1 38E sing 8 n n C C1 38E sing 9 n y C4 C3 38E doub 10 n y C7 N 38E sing 11 n n C10 N1 38E sing 12 n n N1 C8 38E sing 13 n n C1 O1 38E sing 14 n n C1 C2 38E doub 15 n y C3 C2 38E sing 16 n y N C8 38E doub 17 n n C8 C11 38E sing 18 n n C2 F1 38E sing 19 n n O1 H1 38E sing 20 n n C3 H2 38E sing 21 n n C5 H3 38E sing 22 n n C6 H4 38E sing 23 n n C10 H5 38E sing 24 n n C10 H6 38E sing 25 n n C10 H7 38E sing 26 n n C11 H8 38E sing 27 n n C11 H9 38E sing 28 n n C11 H10 38E sing 29 n n # _atom_sites.entry_id 6CZH _atom_sites.fract_transf_matrix[1][1] 0.020807 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01684 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013729 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 38E A 1 201 1 38E 38E . D 2 38E B 1 201 2 38E 38E . E 3 HOH A 1 301 92 HOH HOH . E 3 HOH A 2 302 21 HOH HOH . E 3 HOH A 3 303 43 HOH HOH . E 3 HOH A 4 304 45 HOH HOH . E 3 HOH A 5 305 37 HOH HOH . E 3 HOH A 6 306 69 HOH HOH . E 3 HOH A 7 307 49 HOH HOH . E 3 HOH A 8 308 142 HOH HOH . E 3 HOH A 9 309 23 HOH HOH . E 3 HOH A 10 310 17 HOH HOH . E 3 HOH A 11 311 67 HOH HOH . E 3 HOH A 12 312 55 HOH HOH . E 3 HOH A 13 313 129 HOH HOH . E 3 HOH A 14 314 118 HOH HOH . E 3 HOH A 15 315 16 HOH HOH . E 3 HOH A 16 316 25 HOH HOH . E 3 HOH A 17 317 10 HOH HOH . E 3 HOH A 18 318 138 HOH HOH . E 3 HOH A 19 319 51 HOH HOH . E 3 HOH A 20 320 105 HOH HOH . E 3 HOH A 21 321 54 HOH HOH . E 3 HOH A 22 322 102 HOH HOH . E 3 HOH A 23 323 13 HOH HOH . E 3 HOH A 24 324 56 HOH HOH . E 3 HOH A 25 325 71 HOH HOH . E 3 HOH A 26 326 46 HOH HOH . E 3 HOH A 27 327 2 HOH HOH . E 3 HOH A 28 328 20 HOH HOH . E 3 HOH A 29 329 53 HOH HOH . E 3 HOH A 30 330 98 HOH HOH . E 3 HOH A 31 331 14 HOH HOH . E 3 HOH A 32 332 50 HOH HOH . E 3 HOH A 33 333 27 HOH HOH . E 3 HOH A 34 334 42 HOH HOH . E 3 HOH A 35 335 95 HOH HOH . E 3 HOH A 36 336 80 HOH HOH . E 3 HOH A 37 337 61 HOH HOH . E 3 HOH A 38 338 79 HOH HOH . E 3 HOH A 39 339 68 HOH HOH . E 3 HOH A 40 340 18 HOH HOH . E 3 HOH A 41 341 38 HOH HOH . E 3 HOH A 42 342 41 HOH HOH . E 3 HOH A 43 343 57 HOH HOH . E 3 HOH A 44 344 66 HOH HOH . E 3 HOH A 45 345 128 HOH HOH . E 3 HOH A 46 346 89 HOH HOH . E 3 HOH A 47 347 22 HOH HOH . E 3 HOH A 48 348 35 HOH HOH . E 3 HOH A 49 349 111 HOH HOH . E 3 HOH A 50 350 82 HOH HOH . E 3 HOH A 51 351 85 HOH HOH . E 3 HOH A 52 352 130 HOH HOH . E 3 HOH A 53 353 104 HOH HOH . E 3 HOH A 54 354 48 HOH HOH . E 3 HOH A 55 355 136 HOH HOH . E 3 HOH A 56 356 139 HOH HOH . E 3 HOH A 57 357 110 HOH HOH . E 3 HOH A 58 358 84 HOH HOH . E 3 HOH A 59 359 88 HOH HOH . E 3 HOH A 60 360 58 HOH HOH . E 3 HOH A 61 361 34 HOH HOH . E 3 HOH A 62 362 115 HOH HOH . F 3 HOH B 1 301 100 HOH HOH . F 3 HOH B 2 302 125 HOH HOH . F 3 HOH B 3 303 94 HOH HOH . F 3 HOH B 4 304 59 HOH HOH . F 3 HOH B 5 305 87 HOH HOH . F 3 HOH B 6 306 108 HOH HOH . F 3 HOH B 7 307 75 HOH HOH . F 3 HOH B 8 308 26 HOH HOH . F 3 HOH B 9 309 107 HOH HOH . F 3 HOH B 10 310 78 HOH HOH . F 3 HOH B 11 311 6 HOH HOH . F 3 HOH B 12 312 72 HOH HOH . F 3 HOH B 13 313 29 HOH HOH . F 3 HOH B 14 314 1 HOH HOH . F 3 HOH B 15 315 31 HOH HOH . F 3 HOH B 16 316 4 HOH HOH . F 3 HOH B 17 317 12 HOH HOH . F 3 HOH B 18 318 117 HOH HOH . F 3 HOH B 19 319 19 HOH HOH . F 3 HOH B 20 320 83 HOH HOH . F 3 HOH B 21 321 30 HOH HOH . F 3 HOH B 22 322 32 HOH HOH . F 3 HOH B 23 323 11 HOH HOH . F 3 HOH B 24 324 28 HOH HOH . F 3 HOH B 25 325 15 HOH HOH . F 3 HOH B 26 326 76 HOH HOH . F 3 HOH B 27 327 86 HOH HOH . F 3 HOH B 28 328 8 HOH HOH . F 3 HOH B 29 329 109 HOH HOH . F 3 HOH B 30 330 90 HOH HOH . F 3 HOH B 31 331 113 HOH HOH . F 3 HOH B 32 332 70 HOH HOH . F 3 HOH B 33 333 63 HOH HOH . F 3 HOH B 34 334 143 HOH HOH . F 3 HOH B 35 335 7 HOH HOH . F 3 HOH B 36 336 77 HOH HOH . F 3 HOH B 37 337 39 HOH HOH . F 3 HOH B 38 338 60 HOH HOH . F 3 HOH B 39 339 3 HOH HOH . F 3 HOH B 40 340 65 HOH HOH . F 3 HOH B 41 341 5 HOH HOH . F 3 HOH B 42 342 40 HOH HOH . F 3 HOH B 43 343 9 HOH HOH . F 3 HOH B 44 344 135 HOH HOH . F 3 HOH B 45 345 116 HOH HOH . F 3 HOH B 46 346 33 HOH HOH . F 3 HOH B 47 347 62 HOH HOH . F 3 HOH B 48 348 36 HOH HOH . F 3 HOH B 49 349 47 HOH HOH . F 3 HOH B 50 350 52 HOH HOH . F 3 HOH B 51 351 24 HOH HOH . F 3 HOH B 52 352 144 HOH HOH . F 3 HOH B 53 353 134 HOH HOH . F 3 HOH B 54 354 44 HOH HOH . F 3 HOH B 55 355 126 HOH HOH . F 3 HOH B 56 356 64 HOH HOH . F 3 HOH B 57 357 74 HOH HOH . F 3 HOH B 58 358 120 HOH HOH . F 3 HOH B 59 359 73 HOH HOH . F 3 HOH B 60 360 81 HOH HOH . F 3 HOH B 61 361 133 HOH HOH . F 3 HOH B 62 362 103 HOH HOH . F 3 HOH B 63 363 93 HOH HOH . F 3 HOH B 64 364 140 HOH HOH . F 3 HOH B 65 365 106 HOH HOH . F 3 HOH B 66 366 137 HOH HOH . F 3 HOH B 67 367 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F1 38E . . . D 2 77.733 28.397 13.249 1 19.51 ? F1 38E 201 B 1 HETATM 2 C C2 38E . . . D 2 76.554 28.712 13.83 1 17.41 ? C2 38E 201 B 1 HETATM 3 C C1 38E . . . D 2 76.495 28.837 15.216 1 19.48 ? C1 38E 201 B 1 HETATM 4 O O1 38E . . . D 2 77.612 28.645 15.967 1 16.78 ? O1 38E 201 B 1 HETATM 5 C C3 38E . . . D 2 75.423 28.908 13.055 1 16.14 ? C3 38E 201 B 1 HETATM 6 C C4 38E . . . D 2 74.21 29.236 13.686 1 10.28 ? C4 38E 201 B 1 HETATM 7 C C5 38E . . . D 2 74.167 29.356 15.08 1 12.33 ? C5 38E 201 B 1 HETATM 8 C C 38E . . . D 2 75.296 29.161 15.837 1 15.1 ? C 38E 201 B 1 HETATM 9 F F 38E . . . D 2 75.233 29.284 17.18 1 20.01 ? F 38E 201 B 1 HETATM 10 C C6 38E . . . D 2 72.934 29.473 13.002 1 9.53 ? C6 38E 201 B 1 HETATM 11 C C7 38E . . . D 2 72.665 29.301 11.661 1 14.51 ? C7 38E 201 B 1 HETATM 12 C C9 38E . . . D 2 71.343 29.556 11.061 1 12.63 ? C9 38E 201 B 1 HETATM 13 O O 38E . . . D 2 70.333 29.943 11.625 1 12.62 ? O 38E 201 B 1 HETATM 14 N N1 38E . . . D 2 71.481 29.273 9.753 1 14.99 ? N1 38E 201 B 1 HETATM 15 C C10 38E . . . D 2 70.424 29.381 8.75 1 12.86 ? C10 38E 201 B 1 HETATM 16 C C8 38E . . . D 2 72.771 28.876 9.531 1 13 ? C8 38E 201 B 1 HETATM 17 N N 38E . . . D 2 73.472 28.887 10.629 1 12.8 ? N 38E 201 B 1 HETATM 18 C C11 38E . . . D 2 73.293 28.474 8.175 1 15.18 ? C11 38E 201 B 1 HETATM 19 H H1 38E . . . D 2 78.305 29.028 15.659 1 20.17 ? H1 38E 201 B 1 HETATM 20 H H2 38E . . . D 2 75.465 28.824 12.13 1 19.4 ? H2 38E 201 B 1 HETATM 21 H H3 38E . . . D 2 73.366 29.574 15.498 1 14.83 ? H3 38E 201 B 1 HETATM 22 H H4 38E . . . D 2 72.23 29.772 13.53 1 11.47 ? H4 38E 201 B 1 HETATM 23 H H5 38E . . . D 2 69.607 29.687 9.174 1 15.47 ? H5 38E 201 B 1 HETATM 24 H H6 38E . . . D 2 70.69 30.016 8.067 1 15.47 ? H6 38E 201 B 1 HETATM 25 H H7 38E . . . D 2 70.273 28.513 8.345 1 15.47 ? H7 38E 201 B 1 HETATM 26 H H8 38E . . . D 2 73.644 29.256 7.719 1 18.25 ? H8 38E 201 B 1 HETATM 27 H H9 38E . . . D 2 73.999 27.818 8.282 1 18.25 ? H9 38E 201 B 1 HETATM 28 H H10 38E . . . D 2 72.572 28.091 7.652 1 18.25 ? H10 38E 201 B 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #