data_6CZI
#
_model_server_result.job_id            BxA4t5J0jwdPJq1BOwkM_A 
_model_server_result.datetime_utc      '2025-07-04 04:51:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6czi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    6CZI 
#
_exptl.entry_id    6CZI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              252.217 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2,3-dimethyl-3,5-dihydro-4H-imidazol-4-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.49 
_cell.angle_gamma         90 
_cell.entry_id            6CZI 
_cell.length_a            40.142 
_cell.length_b            47.93 
_cell.length_c            52.843 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6CZI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C12 H10 F2 N2 O2' 
_chem_comp.formula_weight    252.217 
_chem_comp.id                38E 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2,3-dimethyl-3,5-dihydro-4H-imidazol-4-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O C9 38E doub 1 n n 
F C 38E sing 2 n n 
C5 C 38E doub 3 n y 
C5 C4 38E sing 4 n y 
C6 C4 38E sing 5 n n 
C6 C7 38E doub 6 z n 
C9 C7 38E sing 7 n n 
C9 N1 38E sing 8 n n 
C C1 38E sing 9 n y 
C4 C3 38E doub 10 n y 
C7 N 38E sing 11 n n 
C10 N1 38E sing 12 n n 
N1 C8 38E sing 13 n n 
C1 O1 38E sing 14 n n 
C1 C2 38E doub 15 n y 
C3 C2 38E sing 16 n y 
N C8 38E doub 17 n n 
C8 C11 38E sing 18 n n 
C2 F1 38E sing 19 n n 
O1 H1 38E sing 20 n n 
C3 H2 38E sing 21 n n 
C5 H3 38E sing 22 n n 
C6 H4 38E sing 23 n n 
C10 H5 38E sing 24 n n 
C10 H6 38E sing 25 n n 
C10 H7 38E sing 26 n n 
C11 H8 38E sing 27 n n 
C11 H9 38E sing 28 n n 
C11 H10 38E sing 29 n n 
#
_atom_sites.entry_id                     6CZI 
_atom_sites.fract_transf_matrix[1][1]    0.024912 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000649 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020864 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01893 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 38E A 1 201 3 38E 38E . 
D 2 38E B 1 201 2 38E 38E . 
E 3 HOH A 1 301 32 HOH HOH . 
E 3 HOH A 2 302 23 HOH HOH . 
E 3 HOH A 3 303 50 HOH HOH . 
E 3 HOH A 4 304 15 HOH HOH . 
E 3 HOH A 5 305 7 HOH HOH . 
E 3 HOH A 6 306 47 HOH HOH . 
E 3 HOH A 7 307 42 HOH HOH . 
E 3 HOH A 8 308 41 HOH HOH . 
E 3 HOH A 9 309 1 HOH HOH . 
E 3 HOH A 10 310 59 HOH HOH . 
E 3 HOH A 11 311 25 HOH HOH . 
E 3 HOH A 12 312 44 HOH HOH . 
E 3 HOH A 13 313 14 HOH HOH . 
E 3 HOH A 14 314 62 HOH HOH . 
E 3 HOH A 15 315 4 HOH HOH . 
E 3 HOH A 16 316 5 HOH HOH . 
E 3 HOH A 17 317 19 HOH HOH . 
E 3 HOH A 18 318 39 HOH HOH . 
E 3 HOH A 19 319 24 HOH HOH . 
E 3 HOH A 20 320 18 HOH HOH . 
E 3 HOH A 21 321 26 HOH HOH . 
E 3 HOH A 22 322 75 HOH HOH . 
E 3 HOH A 23 323 35 HOH HOH . 
E 3 HOH A 24 324 20 HOH HOH . 
E 3 HOH A 25 325 40 HOH HOH . 
E 3 HOH A 26 326 12 HOH HOH . 
E 3 HOH A 27 327 53 HOH HOH . 
E 3 HOH A 28 328 57 HOH HOH . 
E 3 HOH A 29 329 17 HOH HOH . 
E 3 HOH A 30 330 37 HOH HOH . 
E 3 HOH A 31 331 13 HOH HOH . 
E 3 HOH A 32 332 51 HOH HOH . 
E 3 HOH A 33 333 45 HOH HOH . 
E 3 HOH A 34 334 16 HOH HOH . 
E 3 HOH A 35 335 30 HOH HOH . 
E 3 HOH A 36 336 82 HOH HOH . 
E 3 HOH A 37 337 54 HOH HOH . 
E 3 HOH A 38 338 80 HOH HOH . 
E 3 HOH A 39 339 74 HOH HOH . 
E 3 HOH A 40 340 52 HOH HOH . 
E 3 HOH A 41 341 46 HOH HOH . 
E 3 HOH A 42 342 67 HOH HOH . 
E 3 HOH A 43 343 48 HOH HOH . 
E 3 HOH A 44 344 38 HOH HOH . 
E 3 HOH A 45 345 79 HOH HOH . 
E 3 HOH A 46 346 64 HOH HOH . 
E 3 HOH A 47 347 77 HOH HOH . 
F 3 HOH B 1 301 36 HOH HOH . 
F 3 HOH B 2 302 8 HOH HOH . 
F 3 HOH B 3 303 60 HOH HOH . 
F 3 HOH B 4 304 2 HOH HOH . 
F 3 HOH B 5 305 6 HOH HOH . 
F 3 HOH B 6 306 29 HOH HOH . 
F 3 HOH B 7 307 3 HOH HOH . 
F 3 HOH B 8 308 73 HOH HOH . 
F 3 HOH B 9 309 27 HOH HOH . 
F 3 HOH B 10 310 56 HOH HOH . 
F 3 HOH B 11 311 21 HOH HOH . 
F 3 HOH B 12 312 43 HOH HOH . 
F 3 HOH B 13 313 11 HOH HOH . 
F 3 HOH B 14 314 65 HOH HOH . 
F 3 HOH B 15 315 69 HOH HOH . 
F 3 HOH B 16 316 63 HOH HOH . 
F 3 HOH B 17 317 33 HOH HOH . 
F 3 HOH B 18 318 9 HOH HOH . 
F 3 HOH B 19 319 76 HOH HOH . 
F 3 HOH B 20 320 70 HOH HOH . 
F 3 HOH B 21 321 22 HOH HOH . 
F 3 HOH B 22 322 61 HOH HOH . 
F 3 HOH B 23 323 10 HOH HOH . 
F 3 HOH B 24 324 68 HOH HOH . 
F 3 HOH B 25 325 58 HOH HOH . 
F 3 HOH B 26 326 81 HOH HOH . 
F 3 HOH B 27 327 34 HOH HOH . 
F 3 HOH B 28 328 66 HOH HOH . 
F 3 HOH B 29 329 55 HOH HOH . 
F 3 HOH B 30 330 71 HOH HOH . 
F 3 HOH B 31 331 31 HOH HOH . 
F 3 HOH B 32 332 28 HOH HOH . 
F 3 HOH B 33 333 78 HOH HOH . 
F 3 HOH B 34 334 49 HOH HOH . 
F 3 HOH B 35 335 72 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 F F1 38E . . . C 2 -6.92 17.263 -7.669 1 23.62 ? F1 38E 201 A 1 
HETATM 2 C C2 38E . . . C 2 -6.427 16.083 -7.271 1 23.34 ? C2 38E 201 A 1 
HETATM 3 C C1 38E . . . C 2 -5.134 16.043 -6.798 1 23.33 ? C1 38E 201 A 1 
HETATM 4 O O1 38E . . . C 2 -4.39 17.169 -6.742 1 22.61 ? O1 38E 201 A 1 
HETATM 5 C C3 38E . . . C 2 -7.19 14.932 -7.335 1 22.87 ? C3 38E 201 A 1 
HETATM 6 C C4 38E . . . C 2 -6.665 13.718 -6.88 1 21.88 ? C4 38E 201 A 1 
HETATM 7 C C5 38E . . . C 2 -5.349 13.68 -6.426 1 23.42 ? C5 38E 201 A 1 
HETATM 8 C C 38E . . . C 2 -4.606 14.839 -6.381 1 22.65 ? C 38E 201 A 1 
HETATM 9 F F 38E . . . C 2 -3.353 14.827 -5.92 1 23.6 ? F 38E 201 A 1 
HETATM 10 C C6 38E . . . C 2 -7.363 12.451 -6.941 1 20.56 ? C6 38E 201 A 1 
HETATM 11 C C7 38E . . . C 2 -8.596 12.233 -7.519 1 21.48 ? C7 38E 201 A 1 
HETATM 12 C C9 38E . . . C 2 -9.18 10.878 -7.609 1 21.7 ? C9 38E 201 A 1 
HETATM 13 O O 38E . . . C 2 -8.698 9.84 -7.204 1 21.28 ? O 38E 201 A 1 
HETATM 14 N N1 38E . . . C 2 -10.361 11.039 -8.22 1 20.82 ? N1 38E 201 A 1 
HETATM 15 C C10 38E . . . C 2 -11.303 9.969 -8.52 1 20.66 ? C10 38E 201 A 1 
HETATM 16 C C8 38E . . . C 2 -10.539 12.371 -8.484 1 21.59 ? C8 38E 201 A 1 
HETATM 17 N N 38E . . . C 2 -9.52 13.087 -8.088 1 21.16 ? N 38E 201 A 1 
HETATM 18 C C11 38E . . . C 2 -11.795 12.874 -9.152 1 21.09 ? C11 38E 201 A 1 
HETATM 19 H H1 38E . . . C 2 -4.446 17.655 -7.437 1 26.98 ? H1 38E 201 A 1 
HETATM 20 H H2 38E . . . C 2 -8.064 14.971 -7.652 1 27.29 ? H2 38E 201 A 1 
HETATM 21 H H3 38E . . . C 2 -4.977 12.877 -6.141 1 27.95 ? H3 38E 201 A 1 
HETATM 22 H H4 38E . . . C 2 -6.942 11.716 -6.555 1 24.51 ? H4 38E 201 A 1 
HETATM 23 H H5 38E . . . C 2 -10.942 9.124 -8.209 1 24.64 ? H5 38E 201 A 1 
HETATM 24 H H6 38E . . . C 2 -12.145 10.143 -8.071 1 24.64 ? H6 38E 201 A 1 
HETATM 25 H H7 38E . . . C 2 -11.449 9.926 -9.478 1 24.64 ? H7 38E 201 A 1 
HETATM 26 H H8 38E . . . C 2 -12.455 13.092 -8.477 1 25.15 ? H8 38E 201 A 1 
HETATM 27 H H9 38E . . . C 2 -11.589 13.667 -9.672 1 25.15 ? H9 38E 201 A 1 
HETATM 28 H H10 38E . . . C 2 -12.146 12.186 -9.739 1 25.15 ? H10 38E 201 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           251 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           28 
#