data_6CZO
#
_model_server_result.job_id            VA-tPC_NdZ0wKidwHQ9yug 
_model_server_result.datetime_utc      '2024-10-19 03:50:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6czo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":401}' 
#
_entry.id    6CZO 
#
_exptl.entry_id    6CZO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6CZO 
_cell.length_a            138.049 
_cell.length_b            138.049 
_cell.length_c            118.423 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6CZO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,K,L 1 1 
C,D,H,I,J,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 63 A ASP 64 1_555 E MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc2 A NE2 HIS 65 A HIS 66 1_555 E MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc3 A OD2 ASP 91 A ASP 92 1_555 E MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
metalc ? metalc4 A OD2 ASP 91 A ASP 92 1_555 F MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc5 A OD1 ASN 123 A ASN 124 1_555 F MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? 
metalc ? metalc6 A NE2 HIS 172 A HIS 173 1_555 F MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc7 A ND1 HIS 247 A HIS 248 1_555 F MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
metalc ? metalc8 E MN MN . A MN 401 1_555 G O1 PO4 . A PO4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc9 E MN MN . A MN 401 1_555 K O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc10 E MN MN . A MN 401 1_555 K O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc11 F MN MN . A MN 402 1_555 G O4 PO4 . A PO4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc12 F MN MN . A MN 402 1_555 K O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc13 C OD2 ASP 63 C ASP 64 1_555 H MN MN . C MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc14 C NE2 HIS 65 C HIS 66 1_555 H MN MN . C MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc15 C OD2 ASP 91 C ASP 92 1_555 H MN MN . C MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
metalc ? metalc16 C OD2 ASP 91 C ASP 92 1_555 I MN MN . C MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? 
metalc ? metalc17 C OD1 ASN 123 C ASN 124 1_555 I MN MN . C MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
metalc ? metalc18 C NE2 HIS 172 C HIS 173 1_555 I MN MN . C MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
metalc ? metalc19 C ND1 HIS 247 C HIS 248 1_555 I MN MN . C MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc20 H MN MN . C MN 401 1_555 J O2 PO4 . C PO4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc21 H MN MN . C MN 401 1_555 M O HOH . C HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc22 H MN MN . C MN 401 1_555 M O HOH . C HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc23 I MN MN . C MN 402 1_555 J O3 PO4 . C PO4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc24 I MN MN . C MN 402 1_555 M O HOH . C HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6CZO 
_atom_sites.fract_transf_matrix[1][1]    0.007244 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007244 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008444 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 MN A 1 401 401 MN MN . 
F 3 MN A 1 402 402 MN MN . 
G 4 PO4 A 1 403 403 PO4 PO4 . 
H 3 MN C 1 401 401 MN MN . 
I 3 MN C 1 402 402 MN MN . 
J 4 PO4 C 1 403 403 PO4 PO4 . 
K 5 HOH A 1 501 501 HOH HOH . 
K 5 HOH A 2 502 502 HOH HOH . 
K 5 HOH A 3 503 503 HOH HOH . 
K 5 HOH A 4 504 504 HOH HOH . 
K 5 HOH A 5 505 505 HOH HOH . 
K 5 HOH A 6 506 506 HOH HOH . 
K 5 HOH A 7 507 507 HOH HOH . 
K 5 HOH A 8 508 508 HOH HOH . 
K 5 HOH A 9 509 509 HOH HOH . 
K 5 HOH A 10 510 510 HOH HOH . 
K 5 HOH A 11 511 511 HOH HOH . 
K 5 HOH A 12 512 512 HOH HOH . 
K 5 HOH A 13 513 513 HOH HOH . 
K 5 HOH A 14 514 514 HOH HOH . 
K 5 HOH A 15 515 515 HOH HOH . 
K 5 HOH A 16 516 516 HOH HOH . 
K 5 HOH A 17 517 517 HOH HOH . 
K 5 HOH A 18 518 518 HOH HOH . 
K 5 HOH A 19 519 519 HOH HOH . 
K 5 HOH A 20 520 520 HOH HOH . 
K 5 HOH A 21 521 521 HOH HOH . 
K 5 HOH A 22 522 522 HOH HOH . 
K 5 HOH A 23 523 523 HOH HOH . 
K 5 HOH A 24 524 524 HOH HOH . 
K 5 HOH A 25 525 525 HOH HOH . 
K 5 HOH A 26 526 526 HOH HOH . 
K 5 HOH A 27 527 527 HOH HOH . 
K 5 HOH A 28 528 528 HOH HOH . 
K 5 HOH A 29 529 529 HOH HOH . 
K 5 HOH A 30 530 530 HOH HOH . 
K 5 HOH A 31 531 531 HOH HOH . 
K 5 HOH A 32 532 532 HOH HOH . 
K 5 HOH A 33 533 533 HOH HOH . 
L 5 HOH B 1 101 101 HOH HOH . 
M 5 HOH C 1 501 501 HOH HOH . 
M 5 HOH C 2 502 502 HOH HOH . 
M 5 HOH C 3 503 503 HOH HOH . 
M 5 HOH C 4 504 504 HOH HOH . 
M 5 HOH C 5 505 505 HOH HOH . 
M 5 HOH C 6 506 506 HOH HOH . 
M 5 HOH C 7 507 507 HOH HOH . 
M 5 HOH C 8 508 508 HOH HOH . 
M 5 HOH C 9 509 509 HOH HOH . 
M 5 HOH C 10 510 510 HOH HOH . 
M 5 HOH C 11 511 511 HOH HOH . 
M 5 HOH C 12 512 512 HOH HOH . 
M 5 HOH C 13 513 513 HOH HOH . 
M 5 HOH C 14 514 514 HOH HOH . 
M 5 HOH C 15 515 515 HOH HOH . 
M 5 HOH C 16 516 516 HOH HOH . 
M 5 HOH C 17 517 517 HOH HOH . 
M 5 HOH C 18 518 518 HOH HOH . 
M 5 HOH C 19 519 519 HOH HOH . 
M 5 HOH C 20 520 520 HOH HOH . 
M 5 HOH C 21 521 521 HOH HOH . 
M 5 HOH C 22 522 522 HOH HOH . 
M 5 HOH C 23 523 523 HOH HOH . 
M 5 HOH C 24 524 524 HOH HOH . 
M 5 HOH C 25 525 525 HOH HOH . 
N 5 HOH D 1 101 101 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               11.069 
_atom_site.Cartn_y               61.421 
_atom_site.Cartn_z               51.261 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        57.27 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           401 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#