data_6D01
#
_model_server_result.job_id            1_yloHAYrRajFd_I_ojOLQ 
_model_server_result.datetime_utc      '2025-09-04 09:27:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6d01 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":301}' 
#
_entry.id    6D01 
#
_exptl.entry_id    6D01 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    46 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.81 
_cell.angle_gamma         90 
_cell.entry_id            6D01 
_cell.length_a            205.963 
_cell.length_b            150.856 
_cell.length_c            134.651 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6D01 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? pentameric 5 author_defined_assembly 1 
? pentameric 5 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,IB,JB,KB 1 1 
E,F,G,H,J,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,LB 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 K N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
? 4 P N N 
? 4 Q N N 
? 4 R N N 
? 4 S N N 
? 4 T N N 
? 4 U N N 
? 4 V N N 
? 4 W N N 
? 4 X N N 
? 4 Y N N 
? 4 Z N N 
? 4 CA N N 
? 4 DA N N 
? 4 EA N N 
? 4 GA N N 
? 4 HA N N 
? 4 IA N N 
? 4 JA N N 
? 4 KA N N 
? 4 LA N N 
? 4 MA N N 
? 4 NA N N 
? 4 PA N N 
? 4 QA N N 
? 4 RA N N 
? 4 SA N N 
? 4 UA N N 
? 4 VA N N 
? 4 WA N N 
? 4 XA N N 
? 4 YA N N 
? 4 ZA N N 
? 4 AB N N 
? 4 DB N N 
? 4 EB N N 
? 4 FB N N 
? 4 GB N N 
? 4 HB N N 
? 4 IB N N 
? 4 JB N N 
? 4 KB N N 
? 4 LB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 A SG CYS 150 A CYS 140 1_555 A SG CYS 206 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 B SG CYS 133 B CYS 134 1_555 B SG CYS 193 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 C SG CYS 22 C CYS 22 1_555 C SG CYS 96 C CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf6 C SG CYS 150 C CYS 140 1_555 C SG CYS 206 C CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 D SG CYS 23 D CYS 23 1_555 D SG CYS 88 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf8 D SG CYS 133 D CYS 134 1_555 D SG CYS 193 D CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf9 E SG CYS 22 E CYS 22 1_555 E SG CYS 96 E CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf10 E SG CYS 150 E CYS 140 1_555 E SG CYS 206 E CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf11 F SG CYS 23 F CYS 23 1_555 F SG CYS 88 F CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf12 F SG CYS 133 F CYS 134 1_555 F SG CYS 193 F CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf13 G SG CYS 22 G CYS 22 1_555 G SG CYS 96 G CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf14 G SG CYS 150 G CYS 140 1_555 G SG CYS 206 G CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf15 H SG CYS 23 H CYS 23 1_555 H SG CYS 88 H CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf16 H SG CYS 133 H CYS 134 1_555 H SG CYS 193 H CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6D01 
_atom_sites.fract_transf_matrix[1][1]    0.004855 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000409 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006629 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007453 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 4 EDO A 1 301 1 EDO EDO . 
L 4 EDO A 1 302 3 EDO EDO . 
M 4 EDO A 1 303 29 EDO EDO . 
N 4 EDO A 1 304 42 EDO EDO . 
O 5 PEG A 1 305 6 PEG PEG . 
P 4 EDO B 1 301 5 EDO EDO . 
Q 4 EDO B 1 302 6 EDO EDO . 
R 4 EDO B 1 303 10 EDO EDO . 
S 4 EDO B 1 304 27 EDO EDO . 
T 4 EDO B 1 305 32 EDO EDO . 
U 4 EDO B 1 306 33 EDO EDO . 
V 4 EDO B 1 307 34 EDO EDO . 
W 4 EDO B 1 308 35 EDO EDO . 
X 4 EDO B 1 309 36 EDO EDO . 
Y 4 EDO B 1 310 44 EDO EDO . 
Z 4 EDO B 1 311 45 EDO EDO . 
AA 5 PEG B 1 312 4 PEG PEG . 
BA 5 PEG B 1 313 9 PEG PEG . 
CA 4 EDO C 1 301 4 EDO EDO . 
DA 4 EDO C 1 302 11 EDO EDO . 
EA 4 EDO C 1 303 37 EDO EDO . 
FA 5 PEG C 1 304 5 PEG PEG . 
GA 4 EDO D 1 301 12 EDO EDO . 
HA 4 EDO D 1 302 13 EDO EDO . 
IA 4 EDO D 1 303 14 EDO EDO . 
JA 4 EDO D 1 304 15 EDO EDO . 
KA 4 EDO D 1 305 21 EDO EDO . 
LA 4 EDO D 1 306 22 EDO EDO . 
MA 4 EDO D 1 307 38 EDO EDO . 
NA 4 EDO D 1 308 49 EDO EDO . 
OA 5 PEG D 1 309 8 PEG PEG . 
PA 4 EDO E 1 301 16 EDO EDO . 
QA 4 EDO E 1 302 17 EDO EDO . 
RA 4 EDO E 1 303 39 EDO EDO . 
SA 4 EDO E 1 304 41 EDO EDO . 
TA 5 PEG E 1 305 2 PEG PEG . 
UA 4 EDO F 1 301 7 EDO EDO . 
VA 4 EDO F 1 302 8 EDO EDO . 
WA 4 EDO F 1 303 18 EDO EDO . 
XA 4 EDO F 1 304 19 EDO EDO . 
YA 4 EDO F 1 305 20 EDO EDO . 
ZA 4 EDO F 1 306 40 EDO EDO . 
AB 4 EDO F 1 307 46 EDO EDO . 
BB 5 PEG F 1 308 1 PEG PEG . 
CB 5 PEG F 1 309 7 PEG PEG . 
DB 4 EDO G 1 301 24 EDO EDO . 
EB 4 EDO H 1 301 25 EDO EDO . 
FB 4 EDO H 1 302 26 EDO EDO . 
GB 4 EDO H 1 303 48 EDO EDO . 
HB 4 EDO H 1 304 51 EDO EDO . 
IB 4 EDO I 1 101 28 EDO EDO . 
JB 4 EDO I 1 102 31 EDO EDO . 
KB 4 EDO I 1 103 50 EDO EDO . 
LB 4 EDO J 1 101 47 EDO EDO . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . P 4 264.685 146.979 116.608 1 68.35 ? C1 EDO 301 B 1 
HETATM 2 O O1 EDO . . . P 4 265.75 147.63 117.311 1 76.7 ? O1 EDO 301 B 1 
HETATM 3 C C2 EDO . . . P 4 264.098 147.928 115.569 1 65.09 ? C2 EDO 301 B 1 
HETATM 4 O O2 EDO . . . P 4 264.684 147.672 114.287 1 66.71 ? O2 EDO 301 B 1 
#
_model_server_stats.io_time_ms              34 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#