data_6D08 # _model_server_result.job_id Cae25vCufR8qyJd0nZGqFQ _model_server_result.datetime_utc '2024-11-06 17:40:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6d08 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":101}' # _entry.id 6D08 # _exptl.entry_id 6D08 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 76.79 _cell.angle_beta 89.89 _cell.angle_gamma 65.1 _cell.entry_id 6D08 _cell.length_a 33.191 _cell.length_b 34.052 _cell.length_c 35.267 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6D08 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,K,L 1 1 C,D,H,I,J,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ARG 8 C ARG 8 1_555 B N FQA 9 C FQA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 B C FQA 9 C FQA 9 1_555 B N SER 10 C SER 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 D C ARG 8 D ARG 8 1_555 D N FQA 9 D FQA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 D C FQA 9 D FQA 9 1_555 D N SER 10 D SER 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 302 n n S O2 SO4 doub 303 n n S O3 SO4 sing 304 n n S O4 SO4 sing 305 n n # _atom_sites.entry_id 6D08 _atom_sites.fract_transf_matrix[1][1] 0.030128 _atom_sites.fract_transf_matrix[1][2] -0.013983 _atom_sites.fract_transf_matrix[1][3] 0.003568 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.032375 _atom_sites.fract_transf_matrix[2][3] -0.008394 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029293 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 101 1 GOL GOL . F 3 GOL A 1 102 3 GOL GOL . G 4 SO4 C 1 101 2 SO4 SO4 . H 3 GOL B 1 101 2 GOL GOL . I 3 GOL B 1 102 4 GOL GOL . J 4 SO4 D 1 101 1 SO4 SO4 . K 5 HOH A 1 201 26 HOH HOH . K 5 HOH A 2 202 8 HOH HOH . K 5 HOH A 3 203 12 HOH HOH . K 5 HOH A 4 204 20 HOH HOH . K 5 HOH A 5 205 37 HOH HOH . K 5 HOH A 6 206 13 HOH HOH . K 5 HOH A 7 207 39 HOH HOH . K 5 HOH A 8 208 14 HOH HOH . K 5 HOH A 9 209 5 HOH HOH . K 5 HOH A 10 210 7 HOH HOH . K 5 HOH A 11 211 22 HOH HOH . K 5 HOH A 12 212 2 HOH HOH . K 5 HOH A 13 213 31 HOH HOH . K 5 HOH A 14 214 3 HOH HOH . K 5 HOH A 15 215 6 HOH HOH . K 5 HOH A 16 216 32 HOH HOH . L 5 HOH C 1 201 28 HOH HOH . M 5 HOH B 1 201 15 HOH HOH . M 5 HOH B 2 202 29 HOH HOH . M 5 HOH B 3 203 18 HOH HOH . M 5 HOH B 4 204 27 HOH HOH . M 5 HOH B 5 205 21 HOH HOH . M 5 HOH B 6 206 4 HOH HOH . M 5 HOH B 7 207 25 HOH HOH . M 5 HOH B 8 208 24 HOH HOH . M 5 HOH B 9 209 11 HOH HOH . M 5 HOH B 10 210 34 HOH HOH . M 5 HOH B 11 211 33 HOH HOH . M 5 HOH B 12 212 36 HOH HOH . M 5 HOH B 13 213 23 HOH HOH . M 5 HOH B 14 214 38 HOH HOH . M 5 HOH B 15 215 19 HOH HOH . M 5 HOH B 16 216 9 HOH HOH . M 5 HOH B 17 217 10 HOH HOH . M 5 HOH B 18 218 40 HOH HOH . M 5 HOH B 19 219 17 HOH HOH . N 5 HOH D 1 201 16 HOH HOH . N 5 HOH D 2 202 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . J 4 1.999 -55.403 10.608 1 70.03 ? S SO4 101 D 1 HETATM 2 O O1 SO4 . . . J 4 2.519 -55.877 9.327 1 59.53 ? O1 SO4 101 D 1 HETATM 3 O O2 SO4 . . . J 4 2.104 -53.947 10.673 1 52.86 ? O2 SO4 101 D 1 HETATM 4 O O3 SO4 . . . J 4 0.597 -55.791 10.734 1 55.93 ? O3 SO4 101 D 1 HETATM 5 O O4 SO4 . . . J 4 2.77 -55.994 11.699 1 60.55 ? O4 SO4 101 D 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 389 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #