data_6D0Y # _model_server_result.job_id 4XFLBh9cs6Kxyl8ykSJDfQ _model_server_result.datetime_utc '2024-10-11 04:23:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6d0y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":901}' # _entry.id 6D0Y # _exptl.entry_id 6D0Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6D0Y _cell.length_a 78.106 _cell.length_b 111.897 _cell.length_c 124.795 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6D0Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 742 C THR 764 1_555 D MG MG . C MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? covale ? covale1 C C LYS 13 B LYS 2 1_555 C N IYR 14 B IYR 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 C C IYR 14 B IYR 3 1_555 C N GLU 15 B GLU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6D0Y _atom_sites.fract_transf_matrix[1][1] 0.012803 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008937 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008013 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG C 1 901 1 MG MG . E 5 GTA A 1 201 1 GTA GTA . F 6 HOH C 1 1001 265 HOH HOH . F 6 HOH C 2 1002 122 HOH HOH . F 6 HOH C 3 1003 261 HOH HOH . F 6 HOH C 4 1004 274 HOH HOH . F 6 HOH C 5 1005 60 HOH HOH . F 6 HOH C 6 1006 217 HOH HOH . F 6 HOH C 7 1007 102 HOH HOH . F 6 HOH C 8 1008 18 HOH HOH . F 6 HOH C 9 1009 14 HOH HOH . F 6 HOH C 10 1010 30 HOH HOH . F 6 HOH C 11 1011 182 HOH HOH . F 6 HOH C 12 1012 43 HOH HOH . F 6 HOH C 13 1013 175 HOH HOH . F 6 HOH C 14 1014 70 HOH HOH . F 6 HOH C 15 1015 76 HOH HOH . F 6 HOH C 16 1016 173 HOH HOH . F 6 HOH C 17 1017 157 HOH HOH . F 6 HOH C 18 1018 235 HOH HOH . F 6 HOH C 19 1019 169 HOH HOH . F 6 HOH C 20 1020 180 HOH HOH . F 6 HOH C 21 1021 179 HOH HOH . F 6 HOH C 22 1022 58 HOH HOH . F 6 HOH C 23 1023 204 HOH HOH . F 6 HOH C 24 1024 168 HOH HOH . F 6 HOH C 25 1025 183 HOH HOH . F 6 HOH C 26 1026 25 HOH HOH . F 6 HOH C 27 1027 100 HOH HOH . F 6 HOH C 28 1028 219 HOH HOH . F 6 HOH C 29 1029 42 HOH HOH . F 6 HOH C 30 1030 187 HOH HOH . F 6 HOH C 31 1031 74 HOH HOH . F 6 HOH C 32 1032 176 HOH HOH . F 6 HOH C 33 1033 189 HOH HOH . F 6 HOH C 34 1034 23 HOH HOH . F 6 HOH C 35 1035 45 HOH HOH . F 6 HOH C 36 1036 236 HOH HOH . F 6 HOH C 37 1037 120 HOH HOH . F 6 HOH C 38 1038 138 HOH HOH . F 6 HOH C 39 1039 254 HOH HOH . F 6 HOH C 40 1040 15 HOH HOH . F 6 HOH C 41 1041 171 HOH HOH . F 6 HOH C 42 1042 73 HOH HOH . F 6 HOH C 43 1043 87 HOH HOH . F 6 HOH C 44 1044 59 HOH HOH . F 6 HOH C 45 1045 54 HOH HOH . F 6 HOH C 46 1046 55 HOH HOH . F 6 HOH C 47 1047 118 HOH HOH . F 6 HOH C 48 1048 174 HOH HOH . F 6 HOH C 49 1049 251 HOH HOH . F 6 HOH C 50 1050 151 HOH HOH . F 6 HOH C 51 1051 249 HOH HOH . F 6 HOH C 52 1052 111 HOH HOH . F 6 HOH C 53 1053 244 HOH HOH . F 6 HOH C 54 1054 240 HOH HOH . F 6 HOH C 55 1055 137 HOH HOH . F 6 HOH C 56 1056 7 HOH HOH . F 6 HOH C 57 1057 195 HOH HOH . F 6 HOH C 58 1058 218 HOH HOH . F 6 HOH C 59 1059 269 HOH HOH . F 6 HOH C 60 1060 12 HOH HOH . F 6 HOH C 61 1061 250 HOH HOH . F 6 HOH C 62 1062 68 HOH HOH . F 6 HOH C 63 1063 207 HOH HOH . F 6 HOH C 64 1064 192 HOH HOH . F 6 HOH C 65 1065 80 HOH HOH . F 6 HOH C 66 1066 228 HOH HOH . F 6 HOH C 67 1067 227 HOH HOH . F 6 HOH C 68 1068 6 HOH HOH . F 6 HOH C 69 1069 29 HOH HOH . F 6 HOH C 70 1070 134 HOH HOH . F 6 HOH C 71 1071 48 HOH HOH . F 6 HOH C 72 1072 63 HOH HOH . F 6 HOH C 73 1073 231 HOH HOH . F 6 HOH C 74 1074 172 HOH HOH . F 6 HOH C 75 1075 46 HOH HOH . F 6 HOH C 76 1076 170 HOH HOH . F 6 HOH C 77 1077 165 HOH HOH . F 6 HOH C 78 1078 166 HOH HOH . F 6 HOH C 79 1079 145 HOH HOH . F 6 HOH C 80 1080 99 HOH HOH . F 6 HOH C 81 1081 27 HOH HOH . F 6 HOH C 82 1082 245 HOH HOH . F 6 HOH C 83 1083 196 HOH HOH . F 6 HOH C 84 1084 121 HOH HOH . F 6 HOH C 85 1085 50 HOH HOH . F 6 HOH C 86 1086 141 HOH HOH . F 6 HOH C 87 1087 109 HOH HOH . F 6 HOH C 88 1088 114 HOH HOH . F 6 HOH C 89 1089 193 HOH HOH . F 6 HOH C 90 1090 53 HOH HOH . F 6 HOH C 91 1091 128 HOH HOH . F 6 HOH C 92 1092 248 HOH HOH . F 6 HOH C 93 1093 213 HOH HOH . F 6 HOH C 94 1094 205 HOH HOH . F 6 HOH C 95 1095 11 HOH HOH . F 6 HOH C 96 1096 81 HOH HOH . F 6 HOH C 97 1097 123 HOH HOH . F 6 HOH C 98 1098 154 HOH HOH . F 6 HOH C 99 1099 62 HOH HOH . F 6 HOH C 100 1100 208 HOH HOH . F 6 HOH C 101 1101 66 HOH HOH . F 6 HOH C 102 1102 164 HOH HOH . F 6 HOH C 103 1103 57 HOH HOH . F 6 HOH C 104 1104 85 HOH HOH . F 6 HOH C 105 1105 160 HOH HOH . F 6 HOH C 106 1106 35 HOH HOH . F 6 HOH C 107 1107 243 HOH HOH . F 6 HOH C 108 1108 184 HOH HOH . F 6 HOH C 109 1109 153 HOH HOH . F 6 HOH C 110 1110 98 HOH HOH . F 6 HOH C 111 1111 3 HOH HOH . F 6 HOH C 112 1112 233 HOH HOH . F 6 HOH C 113 1113 44 HOH HOH . F 6 HOH C 114 1114 117 HOH HOH . F 6 HOH C 115 1115 202 HOH HOH . F 6 HOH C 116 1116 90 HOH HOH . F 6 HOH C 117 1117 92 HOH HOH . F 6 HOH C 118 1118 199 HOH HOH . F 6 HOH C 119 1119 8 HOH HOH . F 6 HOH C 120 1120 32 HOH HOH . F 6 HOH C 121 1121 16 HOH HOH . F 6 HOH C 122 1122 246 HOH HOH . F 6 HOH C 123 1123 131 HOH HOH . F 6 HOH C 124 1124 47 HOH HOH . F 6 HOH C 125 1125 200 HOH HOH . F 6 HOH C 126 1126 86 HOH HOH . F 6 HOH C 127 1127 2 HOH HOH . F 6 HOH C 128 1128 84 HOH HOH . F 6 HOH C 129 1129 211 HOH HOH . F 6 HOH C 130 1130 147 HOH HOH . F 6 HOH C 131 1131 206 HOH HOH . F 6 HOH C 132 1132 4 HOH HOH . F 6 HOH C 133 1133 113 HOH HOH . F 6 HOH C 134 1134 115 HOH HOH . F 6 HOH C 135 1135 37 HOH HOH . F 6 HOH C 136 1136 105 HOH HOH . F 6 HOH C 137 1137 108 HOH HOH . F 6 HOH C 138 1138 24 HOH HOH . F 6 HOH C 139 1139 94 HOH HOH . F 6 HOH C 140 1140 150 HOH HOH . F 6 HOH C 141 1141 22 HOH HOH . F 6 HOH C 142 1142 216 HOH HOH . F 6 HOH C 143 1143 1 HOH HOH . F 6 HOH C 144 1144 135 HOH HOH . F 6 HOH C 145 1145 107 HOH HOH . F 6 HOH C 146 1146 264 HOH HOH . F 6 HOH C 147 1147 28 HOH HOH . F 6 HOH C 148 1148 104 HOH HOH . F 6 HOH C 149 1149 10 HOH HOH . F 6 HOH C 150 1150 226 HOH HOH . F 6 HOH C 151 1151 20 HOH HOH . F 6 HOH C 152 1152 148 HOH HOH . F 6 HOH C 153 1153 267 HOH HOH . F 6 HOH C 154 1154 101 HOH HOH . F 6 HOH C 155 1155 259 HOH HOH . F 6 HOH C 156 1156 126 HOH HOH . F 6 HOH C 157 1157 252 HOH HOH . F 6 HOH C 158 1158 161 HOH HOH . F 6 HOH C 159 1159 41 HOH HOH . F 6 HOH C 160 1160 124 HOH HOH . F 6 HOH C 161 1161 103 HOH HOH . F 6 HOH C 162 1162 83 HOH HOH . F 6 HOH C 163 1163 38 HOH HOH . F 6 HOH C 164 1164 97 HOH HOH . F 6 HOH C 165 1165 220 HOH HOH . F 6 HOH C 166 1166 215 HOH HOH . F 6 HOH C 167 1167 67 HOH HOH . F 6 HOH C 168 1168 95 HOH HOH . F 6 HOH C 169 1169 71 HOH HOH . F 6 HOH C 170 1170 149 HOH HOH . F 6 HOH C 171 1171 232 HOH HOH . F 6 HOH C 172 1172 152 HOH HOH . F 6 HOH C 173 1173 203 HOH HOH . F 6 HOH C 174 1174 144 HOH HOH . F 6 HOH C 175 1175 93 HOH HOH . F 6 HOH C 176 1176 69 HOH HOH . F 6 HOH C 177 1177 188 HOH HOH . F 6 HOH C 178 1178 162 HOH HOH . F 6 HOH C 179 1179 13 HOH HOH . F 6 HOH C 180 1180 75 HOH HOH . F 6 HOH C 181 1181 56 HOH HOH . F 6 HOH C 182 1182 119 HOH HOH . F 6 HOH C 183 1183 198 HOH HOH . F 6 HOH C 184 1184 139 HOH HOH . F 6 HOH C 185 1185 130 HOH HOH . F 6 HOH C 186 1186 253 HOH HOH . F 6 HOH C 187 1187 31 HOH HOH . F 6 HOH C 188 1188 52 HOH HOH . F 6 HOH C 189 1189 112 HOH HOH . F 6 HOH C 190 1190 156 HOH HOH . F 6 HOH C 191 1191 155 HOH HOH . F 6 HOH C 192 1192 79 HOH HOH . F 6 HOH C 193 1193 5 HOH HOH . F 6 HOH C 194 1194 178 HOH HOH . F 6 HOH C 195 1195 201 HOH HOH . F 6 HOH C 196 1196 209 HOH HOH . F 6 HOH C 197 1197 33 HOH HOH . F 6 HOH C 198 1198 266 HOH HOH . F 6 HOH C 199 1199 110 HOH HOH . F 6 HOH C 200 1200 78 HOH HOH . F 6 HOH C 201 1201 132 HOH HOH . F 6 HOH C 202 1202 142 HOH HOH . F 6 HOH C 203 1203 210 HOH HOH . F 6 HOH C 204 1204 258 HOH HOH . F 6 HOH C 205 1205 256 HOH HOH . F 6 HOH C 206 1206 64 HOH HOH . F 6 HOH C 207 1207 9 HOH HOH . F 6 HOH C 208 1208 194 HOH HOH . F 6 HOH C 209 1209 212 HOH HOH . F 6 HOH C 210 1210 159 HOH HOH . F 6 HOH C 211 1211 262 HOH HOH . F 6 HOH C 212 1212 88 HOH HOH . F 6 HOH C 213 1213 143 HOH HOH . F 6 HOH C 214 1214 133 HOH HOH . F 6 HOH C 215 1215 234 HOH HOH . F 6 HOH C 216 1216 158 HOH HOH . F 6 HOH C 217 1217 242 HOH HOH . F 6 HOH C 218 1218 140 HOH HOH . F 6 HOH C 219 1219 222 HOH HOH . F 6 HOH C 220 1220 214 HOH HOH . F 6 HOH C 221 1221 49 HOH HOH . F 6 HOH C 222 1222 257 HOH HOH . F 6 HOH C 223 1223 197 HOH HOH . F 6 HOH C 224 1224 239 HOH HOH . F 6 HOH C 225 1225 127 HOH HOH . F 6 HOH C 226 1226 40 HOH HOH . F 6 HOH C 227 1227 146 HOH HOH . F 6 HOH C 228 1228 186 HOH HOH . F 6 HOH C 229 1229 96 HOH HOH . F 6 HOH C 230 1230 263 HOH HOH . G 6 HOH A 1 301 237 HOH HOH . G 6 HOH A 2 302 247 HOH HOH . G 6 HOH A 3 303 270 HOH HOH . G 6 HOH A 4 304 185 HOH HOH . G 6 HOH A 5 305 224 HOH HOH . G 6 HOH A 6 306 181 HOH HOH . G 6 HOH A 7 307 17 HOH HOH . G 6 HOH A 8 308 238 HOH HOH . G 6 HOH A 9 309 271 HOH HOH . G 6 HOH A 10 310 229 HOH HOH . G 6 HOH A 11 311 221 HOH HOH . G 6 HOH A 12 312 177 HOH HOH . G 6 HOH A 13 313 225 HOH HOH . G 6 HOH A 14 314 106 HOH HOH . G 6 HOH A 15 315 129 HOH HOH . G 6 HOH A 16 316 163 HOH HOH . G 6 HOH A 17 317 61 HOH HOH . G 6 HOH A 18 318 190 HOH HOH . G 6 HOH A 19 319 89 HOH HOH . G 6 HOH A 20 320 82 HOH HOH . G 6 HOH A 21 321 51 HOH HOH . G 6 HOH A 22 322 19 HOH HOH . G 6 HOH A 23 323 72 HOH HOH . G 6 HOH A 24 324 136 HOH HOH . G 6 HOH A 25 325 272 HOH HOH . G 6 HOH A 26 326 241 HOH HOH . G 6 HOH A 27 327 191 HOH HOH . G 6 HOH A 28 328 21 HOH HOH . G 6 HOH A 29 329 223 HOH HOH . G 6 HOH A 30 330 39 HOH HOH . G 6 HOH A 31 331 36 HOH HOH . G 6 HOH A 32 332 125 HOH HOH . G 6 HOH A 33 333 65 HOH HOH . G 6 HOH A 34 334 34 HOH HOH . G 6 HOH A 35 335 268 HOH HOH . G 6 HOH A 36 336 91 HOH HOH . G 6 HOH A 37 337 230 HOH HOH . G 6 HOH A 38 338 77 HOH HOH . G 6 HOH A 39 339 255 HOH HOH . G 6 HOH A 40 340 26 HOH HOH . G 6 HOH A 41 341 167 HOH HOH . G 6 HOH A 42 342 273 HOH HOH . G 6 HOH A 43 343 260 HOH HOH . H 6 HOH B 1 101 116 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 81.341 _atom_site.Cartn_y 91.349 _atom_site.Cartn_z 32.492 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.14 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 901 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #