data_6D16 # _model_server_result.job_id WI3oWjIBbzbydqiU2YO5oQ _model_server_result.datetime_utc '2024-11-16 08:41:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6d16 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6D16 # _exptl.entry_id 6D16 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6D16 _cell.length_a 56.56 _cell.length_b 59.52 _cell.length_c 77.73 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6D16 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 65 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 69 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 234 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 238 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.044 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 159 n n C1 C2 GOL sing 160 n n C1 H11 GOL sing 161 n n C1 H12 GOL sing 162 n n O1 HO1 GOL sing 163 n n C2 O2 GOL sing 164 n n C2 C3 GOL sing 165 n n C2 H2 GOL sing 166 n n O2 HO2 GOL sing 167 n n C3 O3 GOL sing 168 n n C3 H31 GOL sing 169 n n C3 H32 GOL sing 170 n n O3 HO3 GOL sing 171 n n # _atom_sites.entry_id 6D16 _atom_sites.fract_transf_matrix[1][1] 0.01768 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016801 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012865 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FUJ A 1 301 301 FUJ HV9 . C 3 GOL A 1 302 302 GOL GOL . D 4 HOH A 1 401 162 HOH HOH . D 4 HOH A 2 402 18 HOH HOH . D 4 HOH A 3 403 95 HOH HOH . D 4 HOH A 4 404 48 HOH HOH . D 4 HOH A 5 405 109 HOH HOH . D 4 HOH A 6 406 105 HOH HOH . D 4 HOH A 7 407 124 HOH HOH . D 4 HOH A 8 408 88 HOH HOH . D 4 HOH A 9 409 167 HOH HOH . D 4 HOH A 10 410 238 HOH HOH . D 4 HOH A 11 411 85 HOH HOH . D 4 HOH A 12 412 166 HOH HOH . D 4 HOH A 13 413 172 HOH HOH . D 4 HOH A 14 414 9 HOH HOH . D 4 HOH A 15 415 117 HOH HOH . D 4 HOH A 16 416 247 HOH HOH . D 4 HOH A 17 417 92 HOH HOH . D 4 HOH A 18 418 280 HOH HOH . D 4 HOH A 19 419 150 HOH HOH . D 4 HOH A 20 420 114 HOH HOH . D 4 HOH A 21 421 29 HOH HOH . D 4 HOH A 22 422 120 HOH HOH . D 4 HOH A 23 423 32 HOH HOH . D 4 HOH A 24 424 34 HOH HOH . D 4 HOH A 25 425 144 HOH HOH . D 4 HOH A 26 426 36 HOH HOH . D 4 HOH A 27 427 90 HOH HOH . D 4 HOH A 28 428 234 HOH HOH . D 4 HOH A 29 429 213 HOH HOH . D 4 HOH A 30 430 99 HOH HOH . D 4 HOH A 31 431 2 HOH HOH . D 4 HOH A 32 432 154 HOH HOH . D 4 HOH A 33 433 13 HOH HOH . D 4 HOH A 34 434 146 HOH HOH . D 4 HOH A 35 435 80 HOH HOH . D 4 HOH A 36 436 70 HOH HOH . D 4 HOH A 37 437 73 HOH HOH . D 4 HOH A 38 438 25 HOH HOH . D 4 HOH A 39 439 183 HOH HOH . D 4 HOH A 40 440 201 HOH HOH . D 4 HOH A 41 441 77 HOH HOH . D 4 HOH A 42 442 56 HOH HOH . D 4 HOH A 43 443 260 HOH HOH . D 4 HOH A 44 444 228 HOH HOH . D 4 HOH A 45 445 65 HOH HOH . D 4 HOH A 46 446 16 HOH HOH . D 4 HOH A 47 447 216 HOH HOH . D 4 HOH A 48 448 3 HOH HOH . D 4 HOH A 49 449 215 HOH HOH . D 4 HOH A 50 450 7 HOH HOH . D 4 HOH A 51 451 83 HOH HOH . D 4 HOH A 52 452 58 HOH HOH . D 4 HOH A 53 453 151 HOH HOH . D 4 HOH A 54 454 12 HOH HOH . D 4 HOH A 55 455 176 HOH HOH . D 4 HOH A 56 456 4 HOH HOH . D 4 HOH A 57 457 8 HOH HOH . D 4 HOH A 58 458 136 HOH HOH . D 4 HOH A 59 459 17 HOH HOH . D 4 HOH A 60 460 81 HOH HOH . D 4 HOH A 61 461 21 HOH HOH . D 4 HOH A 62 462 121 HOH HOH . D 4 HOH A 63 463 115 HOH HOH . D 4 HOH A 64 464 113 HOH HOH . D 4 HOH A 65 465 66 HOH HOH . D 4 HOH A 66 466 91 HOH HOH . D 4 HOH A 67 467 5 HOH HOH . D 4 HOH A 68 468 101 HOH HOH . D 4 HOH A 69 469 67 HOH HOH . D 4 HOH A 70 470 23 HOH HOH . D 4 HOH A 71 471 60 HOH HOH . D 4 HOH A 72 472 22 HOH HOH . D 4 HOH A 73 473 175 HOH HOH . D 4 HOH A 74 474 97 HOH HOH . D 4 HOH A 75 475 59 HOH HOH . D 4 HOH A 76 476 131 HOH HOH . D 4 HOH A 77 477 28 HOH HOH . D 4 HOH A 78 478 82 HOH HOH . D 4 HOH A 79 479 258 HOH HOH . D 4 HOH A 80 480 119 HOH HOH . D 4 HOH A 81 481 108 HOH HOH . D 4 HOH A 82 482 104 HOH HOH . D 4 HOH A 83 483 152 HOH HOH . D 4 HOH A 84 484 200 HOH HOH . D 4 HOH A 85 485 38 HOH HOH . D 4 HOH A 86 486 6 HOH HOH . D 4 HOH A 87 487 14 HOH HOH . D 4 HOH A 88 488 161 HOH HOH . D 4 HOH A 89 489 42 HOH HOH . D 4 HOH A 90 490 165 HOH HOH . D 4 HOH A 91 491 251 HOH HOH . D 4 HOH A 92 492 61 HOH HOH . D 4 HOH A 93 493 15 HOH HOH . D 4 HOH A 94 494 37 HOH HOH . D 4 HOH A 95 495 139 HOH HOH . D 4 HOH A 96 496 55 HOH HOH . D 4 HOH A 97 497 39 HOH HOH . D 4 HOH A 98 498 142 HOH HOH . D 4 HOH A 99 499 212 HOH HOH . D 4 HOH A 100 500 206 HOH HOH . D 4 HOH A 101 501 20 HOH HOH . D 4 HOH A 102 502 214 HOH HOH . D 4 HOH A 103 503 49 HOH HOH . D 4 HOH A 104 504 205 HOH HOH . D 4 HOH A 105 505 250 HOH HOH . D 4 HOH A 106 506 10 HOH HOH . D 4 HOH A 107 507 259 HOH HOH . D 4 HOH A 108 508 79 HOH HOH . D 4 HOH A 109 509 84 HOH HOH . D 4 HOH A 110 510 164 HOH HOH . D 4 HOH A 111 511 98 HOH HOH . D 4 HOH A 112 512 68 HOH HOH . D 4 HOH A 113 513 53 HOH HOH . D 4 HOH A 114 514 125 HOH HOH . D 4 HOH A 115 515 128 HOH HOH . D 4 HOH A 116 516 198 HOH HOH . D 4 HOH A 117 517 35 HOH HOH . D 4 HOH A 118 518 54 HOH HOH . D 4 HOH A 119 519 222 HOH HOH . D 4 HOH A 120 520 26 HOH HOH . D 4 HOH A 121 521 194 HOH HOH . D 4 HOH A 122 522 44 HOH HOH . D 4 HOH A 123 523 87 HOH HOH . D 4 HOH A 124 524 262 HOH HOH . D 4 HOH A 125 525 253 HOH HOH . D 4 HOH A 126 526 188 HOH HOH . D 4 HOH A 127 527 19 HOH HOH . D 4 HOH A 128 528 50 HOH HOH . D 4 HOH A 129 529 40 HOH HOH . D 4 HOH A 130 530 148 HOH HOH . D 4 HOH A 131 531 102 HOH HOH . D 4 HOH A 132 532 111 HOH HOH . D 4 HOH A 133 533 47 HOH HOH . D 4 HOH A 134 534 197 HOH HOH . D 4 HOH A 135 535 69 HOH HOH . D 4 HOH A 136 536 195 HOH HOH . D 4 HOH A 137 537 11 HOH HOH . D 4 HOH A 138 538 242 HOH HOH . D 4 HOH A 139 539 31 HOH HOH . D 4 HOH A 140 540 41 HOH HOH . D 4 HOH A 141 541 27 HOH HOH . D 4 HOH A 142 542 207 HOH HOH . D 4 HOH A 143 543 43 HOH HOH . D 4 HOH A 144 544 143 HOH HOH . D 4 HOH A 145 545 76 HOH HOH . D 4 HOH A 146 546 118 HOH HOH . D 4 HOH A 147 547 126 HOH HOH . D 4 HOH A 148 548 192 HOH HOH . D 4 HOH A 149 549 182 HOH HOH . D 4 HOH A 150 550 273 HOH HOH . D 4 HOH A 151 551 177 HOH HOH . D 4 HOH A 152 552 155 HOH HOH . D 4 HOH A 153 553 1 HOH HOH . D 4 HOH A 154 554 135 HOH HOH . D 4 HOH A 155 555 145 HOH HOH . D 4 HOH A 156 556 30 HOH HOH . D 4 HOH A 157 557 227 HOH HOH . D 4 HOH A 158 558 46 HOH HOH . D 4 HOH A 159 559 240 HOH HOH . D 4 HOH A 160 560 52 HOH HOH . D 4 HOH A 161 561 130 HOH HOH . D 4 HOH A 162 562 71 HOH HOH . D 4 HOH A 163 563 170 HOH HOH . D 4 HOH A 164 564 267 HOH HOH . D 4 HOH A 165 565 74 HOH HOH . D 4 HOH A 166 566 265 HOH HOH . D 4 HOH A 167 567 184 HOH HOH . D 4 HOH A 168 568 160 HOH HOH . D 4 HOH A 169 569 57 HOH HOH . D 4 HOH A 170 570 106 HOH HOH . D 4 HOH A 171 571 137 HOH HOH . D 4 HOH A 172 572 157 HOH HOH . D 4 HOH A 173 573 224 HOH HOH . D 4 HOH A 174 574 63 HOH HOH . D 4 HOH A 175 575 153 HOH HOH . D 4 HOH A 176 576 254 HOH HOH . D 4 HOH A 177 577 226 HOH HOH . D 4 HOH A 178 578 163 HOH HOH . D 4 HOH A 179 579 33 HOH HOH . D 4 HOH A 180 580 244 HOH HOH . D 4 HOH A 181 581 64 HOH HOH . D 4 HOH A 182 582 134 HOH HOH . D 4 HOH A 183 583 178 HOH HOH . D 4 HOH A 184 584 51 HOH HOH . D 4 HOH A 185 585 129 HOH HOH . D 4 HOH A 186 586 100 HOH HOH . D 4 HOH A 187 587 255 HOH HOH . D 4 HOH A 188 588 261 HOH HOH . D 4 HOH A 189 589 203 HOH HOH . D 4 HOH A 190 590 110 HOH HOH . D 4 HOH A 191 591 107 HOH HOH . D 4 HOH A 192 592 239 HOH HOH . D 4 HOH A 193 593 45 HOH HOH . D 4 HOH A 194 594 89 HOH HOH . D 4 HOH A 195 595 245 HOH HOH . D 4 HOH A 196 596 279 HOH HOH . D 4 HOH A 197 597 141 HOH HOH . D 4 HOH A 198 598 241 HOH HOH . D 4 HOH A 199 599 96 HOH HOH . D 4 HOH A 200 600 78 HOH HOH . D 4 HOH A 201 601 202 HOH HOH . D 4 HOH A 202 602 231 HOH HOH . D 4 HOH A 203 603 132 HOH HOH . D 4 HOH A 204 604 133 HOH HOH . D 4 HOH A 205 605 275 HOH HOH . D 4 HOH A 206 606 140 HOH HOH . D 4 HOH A 207 607 158 HOH HOH . D 4 HOH A 208 608 156 HOH HOH . D 4 HOH A 209 609 277 HOH HOH . D 4 HOH A 210 610 199 HOH HOH . D 4 HOH A 211 611 185 HOH HOH . D 4 HOH A 212 612 208 HOH HOH . D 4 HOH A 213 613 211 HOH HOH . D 4 HOH A 214 614 149 HOH HOH . D 4 HOH A 215 615 204 HOH HOH . D 4 HOH A 216 616 217 HOH HOH . D 4 HOH A 217 617 281 HOH HOH . D 4 HOH A 218 618 138 HOH HOH . D 4 HOH A 219 619 181 HOH HOH . D 4 HOH A 220 620 193 HOH HOH . D 4 HOH A 221 621 112 HOH HOH . D 4 HOH A 222 622 179 HOH HOH . D 4 HOH A 223 623 248 HOH HOH . D 4 HOH A 224 624 249 HOH HOH . D 4 HOH A 225 625 147 HOH HOH . D 4 HOH A 226 626 169 HOH HOH . D 4 HOH A 227 627 189 HOH HOH . D 4 HOH A 228 628 174 HOH HOH . D 4 HOH A 229 629 94 HOH HOH . D 4 HOH A 230 630 269 HOH HOH . D 4 HOH A 231 631 276 HOH HOH . D 4 HOH A 232 632 237 HOH HOH . D 4 HOH A 233 633 209 HOH HOH . D 4 HOH A 234 634 210 HOH HOH . D 4 HOH A 235 635 116 HOH HOH . D 4 HOH A 236 636 168 HOH HOH . D 4 HOH A 237 637 236 HOH HOH . D 4 HOH A 238 638 190 HOH HOH . D 4 HOH A 239 639 270 HOH HOH . D 4 HOH A 240 640 62 HOH HOH . D 4 HOH A 241 641 186 HOH HOH . D 4 HOH A 242 642 127 HOH HOH . D 4 HOH A 243 643 187 HOH HOH . D 4 HOH A 244 644 257 HOH HOH . D 4 HOH A 245 645 272 HOH HOH . D 4 HOH A 246 646 75 HOH HOH . D 4 HOH A 247 647 159 HOH HOH . D 4 HOH A 248 648 218 HOH HOH . D 4 HOH A 249 649 24 HOH HOH . D 4 HOH A 250 650 225 HOH HOH . D 4 HOH A 251 651 256 HOH HOH . D 4 HOH A 252 652 191 HOH HOH . D 4 HOH A 253 653 235 HOH HOH . D 4 HOH A 254 654 103 HOH HOH . D 4 HOH A 255 655 196 HOH HOH . D 4 HOH A 256 656 246 HOH HOH . D 4 HOH A 257 657 173 HOH HOH . D 4 HOH A 258 658 219 HOH HOH . D 4 HOH A 259 659 266 HOH HOH . D 4 HOH A 260 660 229 HOH HOH . D 4 HOH A 261 661 233 HOH HOH . D 4 HOH A 262 662 72 HOH HOH . D 4 HOH A 263 663 123 HOH HOH . D 4 HOH A 264 664 232 HOH HOH . D 4 HOH A 265 665 180 HOH HOH . D 4 HOH A 266 666 230 HOH HOH . D 4 HOH A 267 667 243 HOH HOH . D 4 HOH A 268 668 223 HOH HOH . D 4 HOH A 269 669 271 HOH HOH . D 4 HOH A 270 670 86 HOH HOH . D 4 HOH A 271 671 264 HOH HOH . D 4 HOH A 272 672 278 HOH HOH . D 4 HOH A 273 673 220 HOH HOH . D 4 HOH A 274 674 221 HOH HOH . D 4 HOH A 275 675 268 HOH HOH . D 4 HOH A 276 676 263 HOH HOH . D 4 HOH A 277 677 122 HOH HOH . D 4 HOH A 278 678 93 HOH HOH . D 4 HOH A 279 679 274 HOH HOH . D 4 HOH A 280 680 252 HOH HOH . D 4 HOH A 281 681 171 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 10.943 24.57 31.397 1 46.59 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . C 3 12.095 24.413 32.233 1 48.91 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . C 3 10.953 25.961 30.775 1 44.6 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . C 3 12.273 26.266 30.311 1 42 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . C 3 9.981 25.999 29.601 1 44.42 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . C 3 10.008 27.299 29.002 1 43.59 ? O3 GOL 302 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 6 #