data_6D18 # _model_server_result.job_id H6ECdpH9yLNiVFPFdd8kJw _model_server_result.datetime_utc '2024-11-13 02:56:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6d18 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 6D18 # _exptl.entry_id 6D18 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6D18 _cell.length_a 56.61 _cell.length_b 59.68 _cell.length_c 77.69 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6D18 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 65 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 69 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 234 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 238 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.048 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6D18 _atom_sites.fract_transf_matrix[1][1] 0.017665 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016756 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012872 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GTV A 1 301 301 GTV GTV . C 2 GTV A 1 302 302 GTV GTV . D 2 GTV A 1 303 303 GTV GTV . E 3 GOL A 1 304 304 GOL GOL . F 4 HOH A 1 401 163 HOH HOH . F 4 HOH A 2 402 147 HOH HOH . F 4 HOH A 3 403 30 HOH HOH . F 4 HOH A 4 404 171 HOH HOH . F 4 HOH A 5 405 99 HOH HOH . F 4 HOH A 6 406 63 HOH HOH . F 4 HOH A 7 407 252 HOH HOH . F 4 HOH A 8 408 41 HOH HOH . F 4 HOH A 9 409 96 HOH HOH . F 4 HOH A 10 410 247 HOH HOH . F 4 HOH A 11 411 166 HOH HOH . F 4 HOH A 12 412 125 HOH HOH . F 4 HOH A 13 413 56 HOH HOH . F 4 HOH A 14 414 179 HOH HOH . F 4 HOH A 15 415 229 HOH HOH . F 4 HOH A 16 416 37 HOH HOH . F 4 HOH A 17 417 175 HOH HOH . F 4 HOH A 18 418 3 HOH HOH . F 4 HOH A 19 419 276 HOH HOH . F 4 HOH A 20 420 51 HOH HOH . F 4 HOH A 21 421 186 HOH HOH . F 4 HOH A 22 422 95 HOH HOH . F 4 HOH A 23 423 18 HOH HOH . F 4 HOH A 24 424 45 HOH HOH . F 4 HOH A 25 425 1 HOH HOH . F 4 HOH A 26 426 58 HOH HOH . F 4 HOH A 27 427 10 HOH HOH . F 4 HOH A 28 428 87 HOH HOH . F 4 HOH A 29 429 223 HOH HOH . F 4 HOH A 30 430 20 HOH HOH . F 4 HOH A 31 431 73 HOH HOH . F 4 HOH A 32 432 176 HOH HOH . F 4 HOH A 33 433 143 HOH HOH . F 4 HOH A 34 434 60 HOH HOH . F 4 HOH A 35 435 269 HOH HOH . F 4 HOH A 36 436 105 HOH HOH . F 4 HOH A 37 437 27 HOH HOH . F 4 HOH A 38 438 28 HOH HOH . F 4 HOH A 39 439 35 HOH HOH . F 4 HOH A 40 440 67 HOH HOH . F 4 HOH A 41 441 213 HOH HOH . F 4 HOH A 42 442 220 HOH HOH . F 4 HOH A 43 443 161 HOH HOH . F 4 HOH A 44 444 230 HOH HOH . F 4 HOH A 45 445 54 HOH HOH . F 4 HOH A 46 446 138 HOH HOH . F 4 HOH A 47 447 4 HOH HOH . F 4 HOH A 48 448 107 HOH HOH . F 4 HOH A 49 449 97 HOH HOH . F 4 HOH A 50 450 15 HOH HOH . F 4 HOH A 51 451 49 HOH HOH . F 4 HOH A 52 452 113 HOH HOH . F 4 HOH A 53 453 43 HOH HOH . F 4 HOH A 54 454 250 HOH HOH . F 4 HOH A 55 455 33 HOH HOH . F 4 HOH A 56 456 2 HOH HOH . F 4 HOH A 57 457 133 HOH HOH . F 4 HOH A 58 458 193 HOH HOH . F 4 HOH A 59 459 208 HOH HOH . F 4 HOH A 60 460 198 HOH HOH . F 4 HOH A 61 461 129 HOH HOH . F 4 HOH A 62 462 121 HOH HOH . F 4 HOH A 63 463 65 HOH HOH . F 4 HOH A 64 464 238 HOH HOH . F 4 HOH A 65 465 6 HOH HOH . F 4 HOH A 66 466 13 HOH HOH . F 4 HOH A 67 467 88 HOH HOH . F 4 HOH A 68 468 111 HOH HOH . F 4 HOH A 69 469 79 HOH HOH . F 4 HOH A 70 470 132 HOH HOH . F 4 HOH A 71 471 146 HOH HOH . F 4 HOH A 72 472 134 HOH HOH . F 4 HOH A 73 473 84 HOH HOH . F 4 HOH A 74 474 203 HOH HOH . F 4 HOH A 75 475 12 HOH HOH . F 4 HOH A 76 476 8 HOH HOH . F 4 HOH A 77 477 92 HOH HOH . F 4 HOH A 78 478 53 HOH HOH . F 4 HOH A 79 479 21 HOH HOH . F 4 HOH A 80 480 48 HOH HOH . F 4 HOH A 81 481 189 HOH HOH . F 4 HOH A 82 482 16 HOH HOH . F 4 HOH A 83 483 122 HOH HOH . F 4 HOH A 84 484 98 HOH HOH . F 4 HOH A 85 485 9 HOH HOH . F 4 HOH A 86 486 29 HOH HOH . F 4 HOH A 87 487 237 HOH HOH . F 4 HOH A 88 488 34 HOH HOH . F 4 HOH A 89 489 119 HOH HOH . F 4 HOH A 90 490 201 HOH HOH . F 4 HOH A 91 491 114 HOH HOH . F 4 HOH A 92 492 136 HOH HOH . F 4 HOH A 93 493 104 HOH HOH . F 4 HOH A 94 494 55 HOH HOH . F 4 HOH A 95 495 174 HOH HOH . F 4 HOH A 96 496 72 HOH HOH . F 4 HOH A 97 497 90 HOH HOH . F 4 HOH A 98 498 17 HOH HOH . F 4 HOH A 99 499 162 HOH HOH . F 4 HOH A 100 500 142 HOH HOH . F 4 HOH A 101 501 7 HOH HOH . F 4 HOH A 102 502 36 HOH HOH . F 4 HOH A 103 503 167 HOH HOH . F 4 HOH A 104 504 234 HOH HOH . F 4 HOH A 105 505 127 HOH HOH . F 4 HOH A 106 506 177 HOH HOH . F 4 HOH A 107 507 14 HOH HOH . F 4 HOH A 108 508 70 HOH HOH . F 4 HOH A 109 509 130 HOH HOH . F 4 HOH A 110 510 39 HOH HOH . F 4 HOH A 111 511 44 HOH HOH . F 4 HOH A 112 512 94 HOH HOH . F 4 HOH A 113 513 5 HOH HOH . F 4 HOH A 114 514 66 HOH HOH . F 4 HOH A 115 515 224 HOH HOH . F 4 HOH A 116 516 47 HOH HOH . F 4 HOH A 117 517 59 HOH HOH . F 4 HOH A 118 518 71 HOH HOH . F 4 HOH A 119 519 68 HOH HOH . F 4 HOH A 120 520 22 HOH HOH . F 4 HOH A 121 521 19 HOH HOH . F 4 HOH A 122 522 180 HOH HOH . F 4 HOH A 123 523 40 HOH HOH . F 4 HOH A 124 524 82 HOH HOH . F 4 HOH A 125 525 140 HOH HOH . F 4 HOH A 126 526 31 HOH HOH . F 4 HOH A 127 527 46 HOH HOH . F 4 HOH A 128 528 76 HOH HOH . F 4 HOH A 129 529 156 HOH HOH . F 4 HOH A 130 530 52 HOH HOH . F 4 HOH A 131 531 103 HOH HOH . F 4 HOH A 132 532 137 HOH HOH . F 4 HOH A 133 533 141 HOH HOH . F 4 HOH A 134 534 11 HOH HOH . F 4 HOH A 135 535 108 HOH HOH . F 4 HOH A 136 536 101 HOH HOH . F 4 HOH A 137 537 75 HOH HOH . F 4 HOH A 138 538 221 HOH HOH . F 4 HOH A 139 539 245 HOH HOH . F 4 HOH A 140 540 215 HOH HOH . F 4 HOH A 141 541 26 HOH HOH . F 4 HOH A 142 542 154 HOH HOH . F 4 HOH A 143 543 183 HOH HOH . F 4 HOH A 144 544 23 HOH HOH . F 4 HOH A 145 545 253 HOH HOH . F 4 HOH A 146 546 42 HOH HOH . F 4 HOH A 147 547 155 HOH HOH . F 4 HOH A 148 548 25 HOH HOH . F 4 HOH A 149 549 271 HOH HOH . F 4 HOH A 150 550 281 HOH HOH . F 4 HOH A 151 551 184 HOH HOH . F 4 HOH A 152 552 170 HOH HOH . F 4 HOH A 153 553 100 HOH HOH . F 4 HOH A 154 554 185 HOH HOH . F 4 HOH A 155 555 251 HOH HOH . F 4 HOH A 156 556 38 HOH HOH . F 4 HOH A 157 557 118 HOH HOH . F 4 HOH A 158 558 249 HOH HOH . F 4 HOH A 159 559 112 HOH HOH . F 4 HOH A 160 560 227 HOH HOH . F 4 HOH A 161 561 123 HOH HOH . F 4 HOH A 162 562 85 HOH HOH . F 4 HOH A 163 563 246 HOH HOH . F 4 HOH A 164 564 50 HOH HOH . F 4 HOH A 165 565 64 HOH HOH . F 4 HOH A 166 566 226 HOH HOH . F 4 HOH A 167 567 181 HOH HOH . F 4 HOH A 168 568 262 HOH HOH . F 4 HOH A 169 569 91 HOH HOH . F 4 HOH A 170 570 204 HOH HOH . F 4 HOH A 171 571 200 HOH HOH . F 4 HOH A 172 572 80 HOH HOH . F 4 HOH A 173 573 160 HOH HOH . F 4 HOH A 174 574 279 HOH HOH . F 4 HOH A 175 575 57 HOH HOH . F 4 HOH A 176 576 190 HOH HOH . F 4 HOH A 177 577 81 HOH HOH . F 4 HOH A 178 578 117 HOH HOH . F 4 HOH A 179 579 205 HOH HOH . F 4 HOH A 180 580 78 HOH HOH . F 4 HOH A 181 581 61 HOH HOH . F 4 HOH A 182 582 32 HOH HOH . F 4 HOH A 183 583 216 HOH HOH . F 4 HOH A 184 584 188 HOH HOH . F 4 HOH A 185 585 145 HOH HOH . F 4 HOH A 186 586 86 HOH HOH . F 4 HOH A 187 587 69 HOH HOH . F 4 HOH A 188 588 115 HOH HOH . F 4 HOH A 189 589 102 HOH HOH . F 4 HOH A 190 590 258 HOH HOH . F 4 HOH A 191 591 116 HOH HOH . F 4 HOH A 192 592 243 HOH HOH . F 4 HOH A 193 593 209 HOH HOH . F 4 HOH A 194 594 241 HOH HOH . F 4 HOH A 195 595 93 HOH HOH . F 4 HOH A 196 596 144 HOH HOH . F 4 HOH A 197 597 275 HOH HOH . F 4 HOH A 198 598 150 HOH HOH . F 4 HOH A 199 599 257 HOH HOH . F 4 HOH A 200 600 239 HOH HOH . F 4 HOH A 201 601 149 HOH HOH . F 4 HOH A 202 602 164 HOH HOH . F 4 HOH A 203 603 254 HOH HOH . F 4 HOH A 204 604 173 HOH HOH . F 4 HOH A 205 605 89 HOH HOH . F 4 HOH A 206 606 195 HOH HOH . F 4 HOH A 207 607 62 HOH HOH . F 4 HOH A 208 608 192 HOH HOH . F 4 HOH A 209 609 169 HOH HOH . F 4 HOH A 210 610 260 HOH HOH . F 4 HOH A 211 611 264 HOH HOH . F 4 HOH A 212 612 236 HOH HOH . F 4 HOH A 213 613 265 HOH HOH . F 4 HOH A 214 614 272 HOH HOH . F 4 HOH A 215 615 153 HOH HOH . F 4 HOH A 216 616 110 HOH HOH . F 4 HOH A 217 617 232 HOH HOH . F 4 HOH A 218 618 217 HOH HOH . F 4 HOH A 219 619 191 HOH HOH . F 4 HOH A 220 620 235 HOH HOH . F 4 HOH A 221 621 214 HOH HOH . F 4 HOH A 222 622 211 HOH HOH . F 4 HOH A 223 623 128 HOH HOH . F 4 HOH A 224 624 228 HOH HOH . F 4 HOH A 225 625 255 HOH HOH . F 4 HOH A 226 626 120 HOH HOH . F 4 HOH A 227 627 126 HOH HOH . F 4 HOH A 228 628 266 HOH HOH . F 4 HOH A 229 629 77 HOH HOH . F 4 HOH A 230 630 268 HOH HOH . F 4 HOH A 231 631 151 HOH HOH . F 4 HOH A 232 632 278 HOH HOH . F 4 HOH A 233 633 74 HOH HOH . F 4 HOH A 234 634 207 HOH HOH . F 4 HOH A 235 635 197 HOH HOH . F 4 HOH A 236 636 256 HOH HOH . F 4 HOH A 237 637 261 HOH HOH . F 4 HOH A 238 638 199 HOH HOH . F 4 HOH A 239 639 178 HOH HOH . F 4 HOH A 240 640 218 HOH HOH . F 4 HOH A 241 641 273 HOH HOH . F 4 HOH A 242 642 282 HOH HOH . F 4 HOH A 243 643 131 HOH HOH . F 4 HOH A 244 644 194 HOH HOH . F 4 HOH A 245 645 168 HOH HOH . F 4 HOH A 246 646 135 HOH HOH . F 4 HOH A 247 647 267 HOH HOH . F 4 HOH A 248 648 240 HOH HOH . F 4 HOH A 249 649 231 HOH HOH . F 4 HOH A 250 650 242 HOH HOH . F 4 HOH A 251 651 157 HOH HOH . F 4 HOH A 252 652 259 HOH HOH . F 4 HOH A 253 653 24 HOH HOH . F 4 HOH A 254 654 124 HOH HOH . F 4 HOH A 255 655 159 HOH HOH . F 4 HOH A 256 656 148 HOH HOH . F 4 HOH A 257 657 158 HOH HOH . F 4 HOH A 258 658 109 HOH HOH . F 4 HOH A 259 659 152 HOH HOH . F 4 HOH A 260 660 270 HOH HOH . F 4 HOH A 261 661 106 HOH HOH . F 4 HOH A 262 662 187 HOH HOH . F 4 HOH A 263 663 233 HOH HOH . F 4 HOH A 264 664 248 HOH HOH . F 4 HOH A 265 665 263 HOH HOH . F 4 HOH A 266 666 212 HOH HOH . F 4 HOH A 267 667 202 HOH HOH . F 4 HOH A 268 668 225 HOH HOH . F 4 HOH A 269 669 172 HOH HOH . F 4 HOH A 270 670 210 HOH HOH . F 4 HOH A 271 671 222 HOH HOH . F 4 HOH A 272 672 219 HOH HOH . F 4 HOH A 273 673 280 HOH HOH . F 4 HOH A 274 674 277 HOH HOH . F 4 HOH A 275 675 165 HOH HOH . F 4 HOH A 276 676 244 HOH HOH . F 4 HOH A 277 677 83 HOH HOH . F 4 HOH A 278 678 139 HOH HOH . F 4 HOH A 279 679 274 HOH HOH . F 4 HOH A 280 680 182 HOH HOH . F 4 HOH A 281 681 196 HOH HOH . F 4 HOH A 282 682 206 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 9.835 26.551 30.127 1 34.85 ? C1 GOL 304 A 1 HETATM 2 O O1 GOL . . . E 3 9.78 27.171 28.838 1 33.59 ? O1 GOL 304 A 1 HETATM 3 C C2 GOL . . . E 3 11.061 25.649 30.206 1 35.19 ? C2 GOL 304 A 1 HETATM 4 O O2 GOL . . . E 3 12.234 26.452 30.385 1 34.05 ? O2 GOL 304 A 1 HETATM 5 C C3 GOL . . . E 3 10.915 24.694 31.384 1 36.09 ? C3 GOL 304 A 1 HETATM 6 O O3 GOL . . . E 3 11.275 25.37 32.594 1 37.46 ? O3 GOL 304 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #