data_6D19
#
_model_server_result.job_id            szkUxHo1WUfcj0gmRC5sEA 
_model_server_result.datetime_utc      '2024-11-16 08:21:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6d19 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    6D19 
#
_exptl.entry_id    6D19 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              333.072 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(5-bromo-7-methyl-2-oxo-2H-1-benzopyran-4-yl)methyl]phosphonic acid' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6D19 
_cell.length_a            56.5 
_cell.length_b            59.74 
_cell.length_c            77.62 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6D19 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             65 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              69 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             234 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              238 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.049 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C11 H10 Br O5 P' 
_chem_comp.formula_weight    333.072 
_chem_comp.id                YKG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(5-bromo-7-methyl-2-oxo-2H-1-benzopyran-4-yl)methyl]phosphonic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 YKG sing 389 n n 
O15 C14 YKG doub 390 n n 
C18 C02 YKG doub 391 n y 
C18 C17 YKG sing 392 n y 
O16 C14 YKG sing 393 n n 
O16 C17 YKG sing 394 n n 
C02 C03 YKG sing 395 n y 
C14 C13 YKG sing 396 n n 
C17 C06 YKG doub 397 n y 
C03 C04 YKG doub 398 n y 
C13 C07 YKG doub 399 n n 
C06 C04 YKG sing 400 n y 
C06 C07 YKG sing 401 n n 
C04 BR05 YKG sing 402 n n 
C07 C08 YKG sing 403 n n 
C08 P09 YKG sing 404 n n 
O10 P09 YKG doub 405 n n 
O12 P09 YKG sing 406 n n 
P09 O11 YKG sing 407 n n 
C01 H1 YKG sing 408 n n 
C01 H2 YKG sing 409 n n 
C01 H3 YKG sing 410 n n 
C03 H4 YKG sing 411 n n 
C08 H5 YKG sing 412 n n 
C08 H6 YKG sing 413 n n 
C13 H7 YKG sing 414 n n 
C18 H8 YKG sing 415 n n 
O11 H9 YKG sing 416 n n 
O12 H10 YKG sing 417 n n 
#
_atom_sites.entry_id                     6D19 
_atom_sites.fract_transf_matrix[1][1]    0.017699 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016739 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012883 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 YKG A 1 301 301 YKG YKG . 
C 2 YKG A 1 302 302 YKG YKG . 
D 2 YKG A 1 303 303 YKG YKG . 
E 3 GOL A 1 304 304 GOL GOL . 
F 4 HOH A 1 401 183 HOH HOH . 
F 4 HOH A 2 402 21 HOH HOH . 
F 4 HOH A 3 403 27 HOH HOH . 
F 4 HOH A 4 404 7 HOH HOH . 
F 4 HOH A 5 405 6 HOH HOH . 
F 4 HOH A 6 406 127 HOH HOH . 
F 4 HOH A 7 407 165 HOH HOH . 
F 4 HOH A 8 408 197 HOH HOH . 
F 4 HOH A 9 409 107 HOH HOH . 
F 4 HOH A 10 410 25 HOH HOH . 
F 4 HOH A 11 411 204 HOH HOH . 
F 4 HOH A 12 412 50 HOH HOH . 
F 4 HOH A 13 413 53 HOH HOH . 
F 4 HOH A 14 414 19 HOH HOH . 
F 4 HOH A 15 415 115 HOH HOH . 
F 4 HOH A 16 416 72 HOH HOH . 
F 4 HOH A 17 417 91 HOH HOH . 
F 4 HOH A 18 418 151 HOH HOH . 
F 4 HOH A 19 419 29 HOH HOH . 
F 4 HOH A 20 420 119 HOH HOH . 
F 4 HOH A 21 421 57 HOH HOH . 
F 4 HOH A 22 422 176 HOH HOH . 
F 4 HOH A 23 423 56 HOH HOH . 
F 4 HOH A 24 424 17 HOH HOH . 
F 4 HOH A 25 425 92 HOH HOH . 
F 4 HOH A 26 426 187 HOH HOH . 
F 4 HOH A 27 427 66 HOH HOH . 
F 4 HOH A 28 428 188 HOH HOH . 
F 4 HOH A 29 429 168 HOH HOH . 
F 4 HOH A 30 430 12 HOH HOH . 
F 4 HOH A 31 431 3 HOH HOH . 
F 4 HOH A 32 432 93 HOH HOH . 
F 4 HOH A 33 433 182 HOH HOH . 
F 4 HOH A 34 434 125 HOH HOH . 
F 4 HOH A 35 435 65 HOH HOH . 
F 4 HOH A 36 436 2 HOH HOH . 
F 4 HOH A 37 437 36 HOH HOH . 
F 4 HOH A 38 438 88 HOH HOH . 
F 4 HOH A 39 439 114 HOH HOH . 
F 4 HOH A 40 440 8 HOH HOH . 
F 4 HOH A 41 441 64 HOH HOH . 
F 4 HOH A 42 442 123 HOH HOH . 
F 4 HOH A 43 443 46 HOH HOH . 
F 4 HOH A 44 444 140 HOH HOH . 
F 4 HOH A 45 445 89 HOH HOH . 
F 4 HOH A 46 446 98 HOH HOH . 
F 4 HOH A 47 447 77 HOH HOH . 
F 4 HOH A 48 448 71 HOH HOH . 
F 4 HOH A 49 449 15 HOH HOH . 
F 4 HOH A 50 450 22 HOH HOH . 
F 4 HOH A 51 451 146 HOH HOH . 
F 4 HOH A 52 452 78 HOH HOH . 
F 4 HOH A 53 453 38 HOH HOH . 
F 4 HOH A 54 454 20 HOH HOH . 
F 4 HOH A 55 455 122 HOH HOH . 
F 4 HOH A 56 456 170 HOH HOH . 
F 4 HOH A 57 457 90 HOH HOH . 
F 4 HOH A 58 458 129 HOH HOH . 
F 4 HOH A 59 459 75 HOH HOH . 
F 4 HOH A 60 460 41 HOH HOH . 
F 4 HOH A 61 461 135 HOH HOH . 
F 4 HOH A 62 462 5 HOH HOH . 
F 4 HOH A 63 463 110 HOH HOH . 
F 4 HOH A 64 464 16 HOH HOH . 
F 4 HOH A 65 465 85 HOH HOH . 
F 4 HOH A 66 466 39 HOH HOH . 
F 4 HOH A 67 467 73 HOH HOH . 
F 4 HOH A 68 468 83 HOH HOH . 
F 4 HOH A 69 469 58 HOH HOH . 
F 4 HOH A 70 470 132 HOH HOH . 
F 4 HOH A 71 471 101 HOH HOH . 
F 4 HOH A 72 472 184 HOH HOH . 
F 4 HOH A 73 473 189 HOH HOH . 
F 4 HOH A 74 474 23 HOH HOH . 
F 4 HOH A 75 475 106 HOH HOH . 
F 4 HOH A 76 476 102 HOH HOH . 
F 4 HOH A 77 477 32 HOH HOH . 
F 4 HOH A 78 478 18 HOH HOH . 
F 4 HOH A 79 479 134 HOH HOH . 
F 4 HOH A 80 480 11 HOH HOH . 
F 4 HOH A 81 481 179 HOH HOH . 
F 4 HOH A 82 482 35 HOH HOH . 
F 4 HOH A 83 483 63 HOH HOH . 
F 4 HOH A 84 484 79 HOH HOH . 
F 4 HOH A 85 485 30 HOH HOH . 
F 4 HOH A 86 486 147 HOH HOH . 
F 4 HOH A 87 487 4 HOH HOH . 
F 4 HOH A 88 488 13 HOH HOH . 
F 4 HOH A 89 489 49 HOH HOH . 
F 4 HOH A 90 490 33 HOH HOH . 
F 4 HOH A 91 491 84 HOH HOH . 
F 4 HOH A 92 492 157 HOH HOH . 
F 4 HOH A 93 493 144 HOH HOH . 
F 4 HOH A 94 494 196 HOH HOH . 
F 4 HOH A 95 495 121 HOH HOH . 
F 4 HOH A 96 496 126 HOH HOH . 
F 4 HOH A 97 497 96 HOH HOH . 
F 4 HOH A 98 498 70 HOH HOH . 
F 4 HOH A 99 499 26 HOH HOH . 
F 4 HOH A 100 500 137 HOH HOH . 
F 4 HOH A 101 501 31 HOH HOH . 
F 4 HOH A 102 502 82 HOH HOH . 
F 4 HOH A 103 503 100 HOH HOH . 
F 4 HOH A 104 504 185 HOH HOH . 
F 4 HOH A 105 505 9 HOH HOH . 
F 4 HOH A 106 506 60 HOH HOH . 
F 4 HOH A 107 507 136 HOH HOH . 
F 4 HOH A 108 508 120 HOH HOH . 
F 4 HOH A 109 509 194 HOH HOH . 
F 4 HOH A 110 510 166 HOH HOH . 
F 4 HOH A 111 511 116 HOH HOH . 
F 4 HOH A 112 512 117 HOH HOH . 
F 4 HOH A 113 513 10 HOH HOH . 
F 4 HOH A 114 514 24 HOH HOH . 
F 4 HOH A 115 515 155 HOH HOH . 
F 4 HOH A 116 516 133 HOH HOH . 
F 4 HOH A 117 517 43 HOH HOH . 
F 4 HOH A 118 518 28 HOH HOH . 
F 4 HOH A 119 519 68 HOH HOH . 
F 4 HOH A 120 520 67 HOH HOH . 
F 4 HOH A 121 521 48 HOH HOH . 
F 4 HOH A 122 522 130 HOH HOH . 
F 4 HOH A 123 523 138 HOH HOH . 
F 4 HOH A 124 524 1 HOH HOH . 
F 4 HOH A 125 525 158 HOH HOH . 
F 4 HOH A 126 526 45 HOH HOH . 
F 4 HOH A 127 527 52 HOH HOH . 
F 4 HOH A 128 528 177 HOH HOH . 
F 4 HOH A 129 529 55 HOH HOH . 
F 4 HOH A 130 530 160 HOH HOH . 
F 4 HOH A 131 531 109 HOH HOH . 
F 4 HOH A 132 532 40 HOH HOH . 
F 4 HOH A 133 533 54 HOH HOH . 
F 4 HOH A 134 534 162 HOH HOH . 
F 4 HOH A 135 535 149 HOH HOH . 
F 4 HOH A 136 536 172 HOH HOH . 
F 4 HOH A 137 537 198 HOH HOH . 
F 4 HOH A 138 538 62 HOH HOH . 
F 4 HOH A 139 539 34 HOH HOH . 
F 4 HOH A 140 540 195 HOH HOH . 
F 4 HOH A 141 541 190 HOH HOH . 
F 4 HOH A 142 542 61 HOH HOH . 
F 4 HOH A 143 543 175 HOH HOH . 
F 4 HOH A 144 544 51 HOH HOH . 
F 4 HOH A 145 545 178 HOH HOH . 
F 4 HOH A 146 546 208 HOH HOH . 
F 4 HOH A 147 547 112 HOH HOH . 
F 4 HOH A 148 548 97 HOH HOH . 
F 4 HOH A 149 549 171 HOH HOH . 
F 4 HOH A 150 550 47 HOH HOH . 
F 4 HOH A 151 551 118 HOH HOH . 
F 4 HOH A 152 552 94 HOH HOH . 
F 4 HOH A 153 553 174 HOH HOH . 
F 4 HOH A 154 554 37 HOH HOH . 
F 4 HOH A 155 555 205 HOH HOH . 
F 4 HOH A 156 556 59 HOH HOH . 
F 4 HOH A 157 557 108 HOH HOH . 
F 4 HOH A 158 558 163 HOH HOH . 
F 4 HOH A 159 559 142 HOH HOH . 
F 4 HOH A 160 560 42 HOH HOH . 
F 4 HOH A 161 561 104 HOH HOH . 
F 4 HOH A 162 562 206 HOH HOH . 
F 4 HOH A 163 563 131 HOH HOH . 
F 4 HOH A 164 564 152 HOH HOH . 
F 4 HOH A 165 565 44 HOH HOH . 
F 4 HOH A 166 566 207 HOH HOH . 
F 4 HOH A 167 567 193 HOH HOH . 
F 4 HOH A 168 568 202 HOH HOH . 
F 4 HOH A 169 569 156 HOH HOH . 
F 4 HOH A 170 570 86 HOH HOH . 
F 4 HOH A 171 571 81 HOH HOH . 
F 4 HOH A 172 572 143 HOH HOH . 
F 4 HOH A 173 573 139 HOH HOH . 
F 4 HOH A 174 574 186 HOH HOH . 
F 4 HOH A 175 575 148 HOH HOH . 
F 4 HOH A 176 576 87 HOH HOH . 
F 4 HOH A 177 577 80 HOH HOH . 
F 4 HOH A 178 578 180 HOH HOH . 
F 4 HOH A 179 579 199 HOH HOH . 
F 4 HOH A 180 580 76 HOH HOH . 
F 4 HOH A 181 581 201 HOH HOH . 
F 4 HOH A 182 582 145 HOH HOH . 
F 4 HOH A 183 583 69 HOH HOH . 
F 4 HOH A 184 584 181 HOH HOH . 
F 4 HOH A 185 585 141 HOH HOH . 
F 4 HOH A 186 586 74 HOH HOH . 
F 4 HOH A 187 587 161 HOH HOH . 
F 4 HOH A 188 588 173 HOH HOH . 
F 4 HOH A 189 589 167 HOH HOH . 
F 4 HOH A 190 590 191 HOH HOH . 
F 4 HOH A 191 591 159 HOH HOH . 
F 4 HOH A 192 592 14 HOH HOH . 
F 4 HOH A 193 593 203 HOH HOH . 
F 4 HOH A 194 594 128 HOH HOH . 
F 4 HOH A 195 595 105 HOH HOH . 
F 4 HOH A 196 596 103 HOH HOH . 
F 4 HOH A 197 597 111 HOH HOH . 
F 4 HOH A 198 598 99 HOH HOH . 
F 4 HOH A 199 599 200 HOH HOH . 
F 4 HOH A 200 600 113 HOH HOH . 
F 4 HOH A 201 601 169 HOH HOH . 
F 4 HOH A 202 602 153 HOH HOH . 
F 4 HOH A 203 603 164 HOH HOH . 
F 4 HOH A 204 604 150 HOH HOH . 
F 4 HOH A 205 605 95 HOH HOH . 
F 4 HOH A 206 606 154 HOH HOH . 
F 4 HOH A 207 607 192 HOH HOH . 
F 4 HOH A 208 608 124 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 YKG . . . B 2 24.289 15.401 5.223 0.81 33.29 ? C01 YKG 301 A 1 
HETATM 2 C C02 YKG . . . B 2 23.2 16.107 6.024 0.81 31.05 ? C02 YKG 301 A 1 
HETATM 3 C C03 YKG . . . B 2 23.332 16.178 7.379 0.81 29.53 ? C03 YKG 301 A 1 
HETATM 4 C C04 YKG . . . B 2 22.402 16.792 8.162 0.81 29.35 ? C04 YKG 301 A 1 
HETATM 5 C C06 YKG . . . B 2 21.262 17.373 7.564 0.81 26.12 ? C06 YKG 301 A 1 
HETATM 6 C C07 YKG . . . B 2 20.195 18.058 8.246 0.81 23.35 ? C07 YKG 301 A 1 
HETATM 7 C C08 YKG . . . B 2 20.152 18.281 9.709 0.81 22.29 ? C08 YKG 301 A 1 
HETATM 8 C C13 YKG . . . B 2 19.175 18.573 7.458 0.81 24.02 ? C13 YKG 301 A 1 
HETATM 9 C C14 YKG . . . B 2 19.187 18.388 6.127 0.81 26.72 ? C14 YKG 301 A 1 
HETATM 10 C C17 YKG . . . B 2 21.141 17.281 6.221 0.81 28.15 ? C17 YKG 301 A 1 
HETATM 11 C C18 YKG . . . B 2 22.109 16.663 5.425 0.81 29.96 ? C18 YKG 301 A 1 
HETATM 12 O O10 YKG . . . B 2 17.654 17.44 10.063 0.81 19.91 ? O10 YKG 301 A 1 
HETATM 13 O O11 YKG . . . B 2 19.046 17.398 11.912 0.81 19.24 -1 O11 YKG 301 A 1 
HETATM 14 O O12 YKG . . . B 2 19.478 15.749 10.334 0.81 19.53 -1 O12 YKG 301 A 1 
HETATM 15 O O15 YKG . . . B 2 18.203 18.849 5.321 0.81 28.7 ? O15 YKG 301 A 1 
HETATM 16 O O16 YKG . . . B 2 20.135 17.766 5.574 0.81 29.34 ? O16 YKG 301 A 1 
HETATM 17 P P09 YKG . . . B 2 18.974 17.171 10.574 0.81 18.72 ? P09 YKG 301 A 1 
HETATM 18 BR BR05 YKG . . . B 2 22.82 16.704 9.973 0.81 28.73 ? BR05 YKG 301 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           18 
#