data_6D1X # _model_server_result.job_id szRGi8accWYyOk-CZ61pVQ _model_server_result.datetime_utc '2024-11-22 20:25:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6d1x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6D1X # _exptl.entry_id 6D1X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 322.32 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-PROPYL CARBOXYAMIDO ADENOSINE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6D1X _cell.length_a 89.467 _cell.length_b 99.654 _cell.length_c 63.191 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6D1X _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H18 N6 O4' _chem_comp.formula_weight 322.32 _chem_comp.id PA7 _chem_comp.mon_nstd_flag . _chem_comp.name 'N-PROPYL CARBOXYAMIDO ADENOSINE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5' O5' PA7 doub 237 n n C5' N5' PA7 sing 238 n n C5' C4' PA7 sing 239 n n N5' C51 PA7 sing 240 n n N5' H5' PA7 sing 241 n n C51 C52 PA7 sing 242 n n C51 H511 PA7 sing 243 n n C51 H512 PA7 sing 244 n n C52 C53 PA7 sing 245 n n C52 H521 PA7 sing 246 n n C52 H522 PA7 sing 247 n n C53 H531 PA7 sing 248 n n C53 H532 PA7 sing 249 n n C53 H533 PA7 sing 250 n n C4' O4' PA7 sing 251 n n C4' C3' PA7 sing 252 n n C4' H4' PA7 sing 253 n n O4' C1' PA7 sing 254 n n C3' O3' PA7 sing 255 n n C3' C2' PA7 sing 256 n n C3' H3' PA7 sing 257 n n O3' H2 PA7 sing 258 n n C2' O2' PA7 sing 259 n n C2' C1' PA7 sing 260 n n C2' H2' PA7 sing 261 n n O2' H1 PA7 sing 262 n n C1' N9 PA7 sing 263 n n C1' H1' PA7 sing 264 n n N9 C8 PA7 sing 265 n y N9 C4 PA7 sing 266 n y C8 N7 PA7 doub 267 n y C8 H8 PA7 sing 268 n n N7 C5 PA7 sing 269 n y C5 C6 PA7 sing 270 n y C5 C4 PA7 doub 271 n y C6 N6 PA7 sing 272 n n C6 N1 PA7 doub 273 n y N6 HN61 PA7 sing 274 n n N6 HN62 PA7 sing 275 n n N1 C2 PA7 sing 276 n y C2 N3 PA7 doub 277 n y C2 H3 PA7 sing 278 n n N3 C4 PA7 sing 279 n y # _atom_sites.entry_id 6D1X _atom_sites.fract_transf_matrix[1][1] 0.011177 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010035 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015825 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PA7 A 1 401 1 PA7 PA7 . C 3 PG4 A 1 402 339 PG4 PG4 . D 3 PG4 A 1 403 340 PG4 PG4 . E 3 PG4 A 1 404 341 PG4 PG4 . F 4 HOH A 1 501 441 HOH HOH . F 4 HOH A 2 502 411 HOH HOH . F 4 HOH A 3 503 406 HOH HOH . F 4 HOH A 4 504 390 HOH HOH . F 4 HOH A 5 505 410 HOH HOH . F 4 HOH A 6 506 391 HOH HOH . F 4 HOH A 7 507 404 HOH HOH . F 4 HOH A 8 508 442 HOH HOH . F 4 HOH A 9 509 357 HOH HOH . F 4 HOH A 10 510 376 HOH HOH . F 4 HOH A 11 511 387 HOH HOH . F 4 HOH A 12 512 418 HOH HOH . F 4 HOH A 13 513 359 HOH HOH . F 4 HOH A 14 514 385 HOH HOH . F 4 HOH A 15 515 399 HOH HOH . F 4 HOH A 16 516 362 HOH HOH . F 4 HOH A 17 517 423 HOH HOH . F 4 HOH A 18 518 388 HOH HOH . F 4 HOH A 19 519 343 HOH HOH . F 4 HOH A 20 520 438 HOH HOH . F 4 HOH A 21 521 345 HOH HOH . F 4 HOH A 22 522 414 HOH HOH . F 4 HOH A 23 523 365 HOH HOH . F 4 HOH A 24 524 348 HOH HOH . F 4 HOH A 25 525 421 HOH HOH . F 4 HOH A 26 526 379 HOH HOH . F 4 HOH A 27 527 344 HOH HOH . F 4 HOH A 28 528 351 HOH HOH . F 4 HOH A 29 529 355 HOH HOH . F 4 HOH A 30 530 403 HOH HOH . F 4 HOH A 31 531 352 HOH HOH . F 4 HOH A 32 532 405 HOH HOH . F 4 HOH A 33 533 358 HOH HOH . F 4 HOH A 34 534 360 HOH HOH . F 4 HOH A 35 535 380 HOH HOH . F 4 HOH A 36 536 408 HOH HOH . F 4 HOH A 37 537 347 HOH HOH . F 4 HOH A 38 538 367 HOH HOH . F 4 HOH A 39 539 375 HOH HOH . F 4 HOH A 40 540 444 HOH HOH . F 4 HOH A 41 541 440 HOH HOH . F 4 HOH A 42 542 354 HOH HOH . F 4 HOH A 43 543 394 HOH HOH . F 4 HOH A 44 544 346 HOH HOH . F 4 HOH A 45 545 427 HOH HOH . F 4 HOH A 46 546 363 HOH HOH . F 4 HOH A 47 547 401 HOH HOH . F 4 HOH A 48 548 420 HOH HOH . F 4 HOH A 49 549 342 HOH HOH . F 4 HOH A 50 550 407 HOH HOH . F 4 HOH A 51 551 353 HOH HOH . F 4 HOH A 52 552 397 HOH HOH . F 4 HOH A 53 553 349 HOH HOH . F 4 HOH A 54 554 378 HOH HOH . F 4 HOH A 55 555 432 HOH HOH . F 4 HOH A 56 556 389 HOH HOH . F 4 HOH A 57 557 368 HOH HOH . F 4 HOH A 58 558 412 HOH HOH . F 4 HOH A 59 559 361 HOH HOH . F 4 HOH A 60 560 415 HOH HOH . F 4 HOH A 61 561 428 HOH HOH . F 4 HOH A 62 562 386 HOH HOH . F 4 HOH A 63 563 383 HOH HOH . F 4 HOH A 64 564 384 HOH HOH . F 4 HOH A 65 565 413 HOH HOH . F 4 HOH A 66 566 356 HOH HOH . F 4 HOH A 67 567 426 HOH HOH . F 4 HOH A 68 568 392 HOH HOH . F 4 HOH A 69 569 454 HOH HOH . F 4 HOH A 70 570 422 HOH HOH . F 4 HOH A 71 571 366 HOH HOH . F 4 HOH A 72 572 435 HOH HOH . F 4 HOH A 73 573 402 HOH HOH . F 4 HOH A 74 574 416 HOH HOH . F 4 HOH A 75 575 381 HOH HOH . F 4 HOH A 76 576 382 HOH HOH . F 4 HOH A 77 577 409 HOH HOH . F 4 HOH A 78 578 434 HOH HOH . F 4 HOH A 79 579 393 HOH HOH . F 4 HOH A 80 580 372 HOH HOH . F 4 HOH A 81 581 398 HOH HOH . F 4 HOH A 82 582 364 HOH HOH . F 4 HOH A 83 583 419 HOH HOH . F 4 HOH A 84 584 436 HOH HOH . F 4 HOH A 85 585 400 HOH HOH . F 4 HOH A 86 586 430 HOH HOH . F 4 HOH A 87 587 395 HOH HOH . F 4 HOH A 88 588 424 HOH HOH . F 4 HOH A 89 589 377 HOH HOH . F 4 HOH A 90 590 449 HOH HOH . F 4 HOH A 91 591 448 HOH HOH . F 4 HOH A 92 592 350 HOH HOH . F 4 HOH A 93 593 429 HOH HOH . F 4 HOH A 94 594 437 HOH HOH . F 4 HOH A 95 595 455 HOH HOH . F 4 HOH A 96 596 369 HOH HOH . F 4 HOH A 97 597 459 HOH HOH . F 4 HOH A 98 598 417 HOH HOH . F 4 HOH A 99 599 370 HOH HOH . F 4 HOH A 100 600 425 HOH HOH . F 4 HOH A 101 601 447 HOH HOH . F 4 HOH A 102 602 371 HOH HOH . F 4 HOH A 103 603 453 HOH HOH . F 4 HOH A 104 604 457 HOH HOH . F 4 HOH A 105 605 450 HOH HOH . F 4 HOH A 106 606 373 HOH HOH . F 4 HOH A 107 607 452 HOH HOH . F 4 HOH A 108 608 445 HOH HOH . F 4 HOH A 109 609 458 HOH HOH . F 4 HOH A 110 610 433 HOH HOH . F 4 HOH A 111 611 460 HOH HOH . F 4 HOH A 112 612 396 HOH HOH . F 4 HOH A 113 613 446 HOH HOH . F 4 HOH A 114 614 451 HOH HOH . F 4 HOH A 115 615 461 HOH HOH . F 4 HOH A 116 616 443 HOH HOH . F 4 HOH A 117 617 374 HOH HOH . F 4 HOH A 118 618 456 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5' PA7 . . . B 2 26.462 14.597 22.071 1 34.35 ? C5' PA7 401 A 1 HETATM 2 O O5' PA7 . . . B 2 27.531 15.092 22.459 1 30.13 ? O5' PA7 401 A 1 HETATM 3 N N5' PA7 . . . B 2 26.248 13.28 22.012 1 28.91 ? N5' PA7 401 A 1 HETATM 4 C C51 PA7 . . . B 2 27.262 12.341 22.39 1 32.92 ? C51 PA7 401 A 1 HETATM 5 C C52 PA7 . . . B 2 27.878 11.782 21.104 1 36.83 ? C52 PA7 401 A 1 HETATM 6 C C53 PA7 . . . B 2 26.898 11.938 19.936 1 38.08 ? C53 PA7 401 A 1 HETATM 7 C C4' PA7 . . . B 2 25.323 15.454 21.651 1 32.16 ? C4' PA7 401 A 1 HETATM 8 O O4' PA7 . . . B 2 24.84 16.127 22.78 1 27.94 ? O4' PA7 401 A 1 HETATM 9 C C3' PA7 . . . B 2 25.656 16.459 20.572 1 31.41 ? C3' PA7 401 A 1 HETATM 10 O O3' PA7 . . . B 2 25.472 15.935 19.279 1 35.22 ? O3' PA7 401 A 1 HETATM 11 C C2' PA7 . . . B 2 24.694 17.556 20.992 1 35.22 ? C2' PA7 401 A 1 HETATM 12 O O2' PA7 . . . B 2 23.46 17.244 20.332 1 35.35 ? O2' PA7 401 A 1 HETATM 13 C C1' PA7 . . . B 2 24.542 17.471 22.55 1 29.1 ? C1' PA7 401 A 1 HETATM 14 N N9 PA7 . . . B 2 25.513 18.355 23.216 1 28.35 ? N9 PA7 401 A 1 HETATM 15 C C8 PA7 . . . B 2 26.724 18.098 23.825 1 30.37 ? C8 PA7 401 A 1 HETATM 16 N N7 PA7 . . . B 2 27.27 19.189 24.308 1 28.33 ? N7 PA7 401 A 1 HETATM 17 C C5 PA7 . . . B 2 26.347 20.192 23.991 1 27.54 ? C5 PA7 401 A 1 HETATM 18 C C6 PA7 . . . B 2 26.279 21.605 24.217 1 28.6 ? C6 PA7 401 A 1 HETATM 19 N N6 PA7 . . . B 2 27.26 22.27 24.826 1 26.66 ? N6 PA7 401 A 1 HETATM 20 N N1 PA7 . . . B 2 25.175 22.282 23.757 1 29.68 ? N1 PA7 401 A 1 HETATM 21 C C2 PA7 . . . B 2 24.185 21.642 23.109 1 27.65 ? C2 PA7 401 A 1 HETATM 22 N N3 PA7 . . . B 2 24.113 20.333 22.838 1 27.61 ? N3 PA7 401 A 1 HETATM 23 C C4 PA7 . . . B 2 25.251 19.693 23.321 1 31.32 ? C4 PA7 401 A 1 HETATM 24 H H5' PA7 . . . B 2 25.485 12.99 21.741 1 34.68 ? H5' PA7 401 A 1 HETATM 25 H H511 PA7 . . . B 2 26.869 11.621 22.908 1 39.5 ? H511 PA7 401 A 1 HETATM 26 H H512 PA7 . . . B 2 27.945 12.786 22.916 1 39.5 ? H512 PA7 401 A 1 HETATM 27 H H521 PA7 . . . B 2 28.694 12.265 20.904 1 44.19 ? H521 PA7 401 A 1 HETATM 28 H H522 PA7 . . . B 2 28.08 10.841 21.229 1 44.19 ? H522 PA7 401 A 1 HETATM 29 H H531 PA7 . . . B 2 26.921 12.853 19.615 1 45.68 ? H531 PA7 401 A 1 HETATM 30 H H532 PA7 . . . B 2 26.001 11.722 20.236 1 45.68 ? H532 PA7 401 A 1 HETATM 31 H H533 PA7 . . . B 2 27.153 11.337 19.219 1 45.68 ? H533 PA7 401 A 1 HETATM 32 H H4' PA7 . . . B 2 24.572 14.934 21.325 1 38.59 ? H4' PA7 401 A 1 HETATM 33 H H3' PA7 . . . B 2 26.572 16.773 20.634 1 37.68 ? H3' PA7 401 A 1 HETATM 34 H H2 PA7 . . . B 2 26.22 15.909 18.875 1 42.25 ? H2 PA7 401 A 1 HETATM 35 H H2' PA7 . . . B 2 25.078 18.42 20.774 1 42.25 ? H2' PA7 401 A 1 HETATM 36 H H1 PA7 . . . B 2 23.376 17.734 19.643 1 42.41 ? H1 PA7 401 A 1 HETATM 37 H H1' PA7 . . . B 2 23.626 17.692 22.78 1 34.91 ? H1' PA7 401 A 1 HETATM 38 H H8 PA7 . . . B 2 27.108 17.253 23.885 1 36.44 ? H8 PA7 401 A 1 HETATM 39 H HN61 PA7 . . . B 2 27.236 23.129 24.865 1 31.98 ? HN61 PA7 401 A 1 HETATM 40 H HN62 PA7 . . . B 2 27.916 21.841 25.178 1 31.98 ? HN62 PA7 401 A 1 HETATM 41 H H3 PA7 . . . B 2 23.473 22.165 22.819 1 33.17 ? H3 PA7 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 41 #