data_6D24
#
_model_server_result.job_id            iKUzG-YZauaH21cLq6g5eA 
_model_server_result.datetime_utc      '2024-11-24 01:01:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6d24 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"EA","auth_seq_id":602}' 
#
_entry.id    6D24 
#
_exptl.entry_id    6D24 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              260.136 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            6-O-phosphono-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.27 
_cell.angle_gamma         90 
_cell.entry_id            6D24 
_cell.length_a            96.79 
_cell.length_b            133.03 
_cell.length_c            107.75 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6D24 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 R N N 
? 3 EA N N 
? 3 UA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 39 A CYS 53 1_555 A SG CYS 121 A CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 A SG CYS 514 A CYS 528 1_555 A SG CYS 538 A CYS 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf3 B SG CYS 39 B CYS 53 1_555 B SG CYS 121 B CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 B SG CYS 514 B CYS 528 1_555 B SG CYS 538 B CYS 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf5 C SG CYS 39 C CYS 53 1_555 C SG CYS 121 C CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf6 D SG CYS 39 D CYS 53 1_555 D SG CYS 121 D CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
covale ? covale1 C C SER 513 C SER 527 1_555 C N CSO 514 C CSO 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? 
covale ? covale2 C C CSO 514 C CSO 528 1_555 C N GLY 515 C GLY 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 D C SER 513 D SER 527 1_555 D N CSO 514 D CSO 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? 
covale ? covale4 D C CSO 514 D CSO 528 1_555 D N GLY 515 D GLY 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
#
_chem_comp.formula           'C6 H13 O9 P' 
_chem_comp.formula_weight    260.136 
_chem_comp.id                BG6 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              6-O-phosphono-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     BETA-D-GLUCOSE-6-PHOSPHATE;6-O-phosphono-beta-D-glucose;6-O-phosphono-D-glucose;6-O-phosphono-glucose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BG6 sing 70 n n 
C1 O1 BG6 sing 71 n n 
C1 O5 BG6 sing 72 n n 
C1 H1 BG6 sing 73 n n 
C2 C3 BG6 sing 74 n n 
C2 O2 BG6 sing 75 n n 
C2 H2 BG6 sing 76 n n 
O1 HO1 BG6 sing 77 n n 
O5 C5 BG6 sing 78 n n 
C3 C4 BG6 sing 79 n n 
C3 O3 BG6 sing 80 n n 
C3 H3 BG6 sing 81 n n 
O2 HO2 BG6 sing 82 n n 
C4 C5 BG6 sing 83 n n 
C4 O4 BG6 sing 84 n n 
C4 H4 BG6 sing 85 n n 
O3 HO3 BG6 sing 86 n n 
C5 C6 BG6 sing 87 n n 
C5 H5 BG6 sing 88 n n 
O4 HO4 BG6 sing 89 n n 
C6 O6 BG6 sing 90 n n 
C6 H61 BG6 sing 91 n n 
C6 H62 BG6 sing 92 n n 
O6 P BG6 sing 93 n n 
P O1P BG6 sing 94 n n 
P O2P BG6 sing 95 n n 
P O3P BG6 doub 96 n n 
O1P H1O1 BG6 sing 97 n n 
O2P H2O2 BG6 sing 98 n n 
#
_pdbx_chem_comp_identifier.comp_id            BG6 
_pdbx_chem_comp_identifier.identifier         b-D-Glcp6PO3 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     6D24 
_atom_sites.fract_transf_matrix[1][1]    0.010332 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001872 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007517 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009432 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 BG6 A 1 601 601 BG6 BG6 . 
F 4 SO4 A 1 602 602 SO4 SO4 . 
G 4 SO4 A 1 603 603 SO4 SO4 . 
H 4 SO4 A 1 604 604 SO4 SO4 . 
I 4 SO4 A 1 605 605 SO4 SO4 . 
J 4 SO4 A 1 606 606 SO4 SO4 . 
K 5 GOL A 1 607 801 GOL GOL . 
L 5 GOL A 1 608 802 GOL GOL . 
M 6 CL A 1 609 901 CL CL . 
N 6 CL A 1 610 903 CL CL . 
O 6 CL A 1 611 905 CL CL . 
P 5 GOL A 1 612 804 GOL GOL . 
Q 6 CL B 1 601 904 CL CL . 
R 3 BG6 B 1 602 601 BG6 BG6 . 
S 4 SO4 B 1 603 602 SO4 SO4 . 
T 4 SO4 B 1 604 603 SO4 SO4 . 
U 4 SO4 B 1 605 604 SO4 SO4 . 
V 4 SO4 B 1 606 605 SO4 SO4 . 
W 4 SO4 B 1 607 606 SO4 SO4 . 
X 5 GOL B 1 608 801 GOL GOL . 
Y 6 CL B 1 609 901 CL CL . 
Z 6 CL B 1 610 902 CL CL . 
AA 6 CL B 1 611 903 CL CL . 
BA 6 CL B 1 612 904 CL CL . 
CA 6 CL B 1 613 902 CL CL . 
DA 5 GOL C 1 601 802 GOL GOL . 
EA 3 BG6 C 1 602 601 BG6 BG6 . 
FA 4 SO4 C 1 603 602 SO4 SO4 . 
GA 4 SO4 C 1 604 603 SO4 SO4 . 
HA 4 SO4 C 1 605 604 SO4 SO4 . 
IA 5 GOL C 1 606 801 GOL GOL . 
JA 5 GOL C 1 607 802 GOL GOL . 
KA 5 GOL C 1 608 803 GOL GOL . 
LA 5 GOL C 1 609 805 GOL GOL . 
MA 6 CL C 1 610 901 CL CL . 
NA 6 CL C 1 611 903 CL CL . 
OA 6 CL C 1 612 904 CL CL . 
PA 6 CL C 1 613 905 CL CL . 
QA 6 CL C 1 614 906 CL CL . 
RA 6 CL C 1 615 907 CL CL . 
SA 5 GOL C 1 616 803 GOL GOL . 
TA 6 CL D 1 601 902 CL CL . 
UA 3 BG6 D 1 602 601 BG6 BG6 . 
VA 4 SO4 D 1 603 602 SO4 SO4 . 
WA 4 SO4 D 1 604 603 SO4 SO4 . 
XA 4 SO4 D 1 605 604 SO4 SO4 . 
YA 4 SO4 D 1 606 605 SO4 SO4 . 
ZA 5 GOL D 1 607 801 GOL GOL . 
AB 5 GOL D 1 608 802 GOL GOL . 
BB 5 GOL D 1 609 804 GOL GOL . 
CB 5 GOL D 1 610 805 GOL GOL . 
DB 6 CL D 1 611 901 CL CL . 
EB 6 CL D 1 612 902 CL CL . 
FB 6 CL D 1 613 903 CL CL . 
GB 6 CL D 1 614 904 CL CL . 
HB 6 CL D 1 615 905 CL CL . 
IB 6 CL D 1 616 906 CL CL . 
JB 6 CL D 1 617 907 CL CL . 
KB 7 HOH A 1 701 704 HOH HOH . 
KB 7 HOH A 2 702 753 HOH HOH . 
KB 7 HOH A 3 703 751 HOH HOH . 
KB 7 HOH A 4 704 764 HOH HOH . 
KB 7 HOH A 5 705 706 HOH HOH . 
KB 7 HOH A 6 706 752 HOH HOH . 
KB 7 HOH A 7 707 707 HOH HOH . 
KB 7 HOH A 8 708 765 HOH HOH . 
LB 7 HOH B 1 701 713 HOH HOH . 
LB 7 HOH B 2 702 716 HOH HOH . 
LB 7 HOH B 3 703 712 HOH HOH . 
LB 7 HOH B 4 704 709 HOH HOH . 
LB 7 HOH B 5 705 715 HOH HOH . 
LB 7 HOH B 6 706 714 HOH HOH . 
LB 7 HOH B 7 707 710 HOH HOH . 
LB 7 HOH B 8 708 711 HOH HOH . 
LB 7 HOH B 9 709 708 HOH HOH . 
MB 7 HOH C 1 701 701 HOH HOH . 
MB 7 HOH C 2 702 712 HOH HOH . 
MB 7 HOH C 3 703 720 HOH HOH . 
MB 7 HOH C 4 704 710 HOH HOH . 
MB 7 HOH C 5 705 713 HOH HOH . 
MB 7 HOH C 6 706 716 HOH HOH . 
MB 7 HOH C 7 707 711 HOH HOH . 
MB 7 HOH C 8 708 718 HOH HOH . 
MB 7 HOH C 9 709 708 HOH HOH . 
MB 7 HOH C 10 710 715 HOH HOH . 
MB 7 HOH C 11 711 703 HOH HOH . 
MB 7 HOH C 12 712 709 HOH HOH . 
MB 7 HOH C 13 713 719 HOH HOH . 
MB 7 HOH C 14 714 717 HOH HOH . 
MB 7 HOH C 15 715 714 HOH HOH . 
MB 7 HOH C 16 716 705 HOH HOH . 
MB 7 HOH C 17 717 702 HOH HOH . 
NB 7 HOH D 1 701 713 HOH HOH . 
NB 7 HOH D 2 702 708 HOH HOH . 
NB 7 HOH D 3 703 711 HOH HOH . 
NB 7 HOH D 4 704 704 HOH HOH . 
NB 7 HOH D 5 705 703 HOH HOH . 
NB 7 HOH D 6 706 709 HOH HOH . 
NB 7 HOH D 7 707 707 HOH HOH . 
NB 7 HOH D 8 708 702 HOH HOH . 
NB 7 HOH D 9 709 705 HOH HOH . 
NB 7 HOH D 10 710 701 HOH HOH . 
NB 7 HOH D 11 711 712 HOH HOH . 
NB 7 HOH D 12 712 706 HOH HOH . 
NB 7 HOH D 13 713 710 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BG6 . . . EA 3 11.209 -38.207 75.604 1 83.47 ? C1 BG6 602 C 1 
HETATM 2 C C2 BG6 . . . EA 3 9.786 -37.791 75.967 1 84.76 ? C2 BG6 602 C 1 
HETATM 3 O O1 BG6 . . . EA 3 12.093 -37.139 75.706 1 83.33 ? O1 BG6 602 C 1 
HETATM 4 O O5 BG6 . . . EA 3 11.208 -38.719 74.274 1 81.05 ? O5 BG6 602 C 1 
HETATM 5 C C3 BG6 . . . EA 3 8.842 -38.985 75.835 1 85.84 ? C3 BG6 602 C 1 
HETATM 6 O O2 BG6 . . . EA 3 9.748 -37.278 77.295 1 86.37 ? O2 BG6 602 C 1 
HETATM 7 C C4 BG6 . . . EA 3 8.983 -39.693 74.484 1 82.29 ? C4 BG6 602 C 1 
HETATM 8 O O3 BG6 . . . EA 3 7.5 -38.546 76.002 1 87.97 ? O3 BG6 602 C 1 
HETATM 9 C C5 BG6 . . . EA 3 10.451 -39.93 74.126 1 80.05 ? C5 BG6 602 C 1 
HETATM 10 O O4 BG6 . . . EA 3 8.331 -40.959 74.55 1 81.98 ? O4 BG6 602 C 1 
HETATM 11 C C6 BG6 . . . EA 3 10.628 -40.367 72.697 1 74.93 ? C6 BG6 602 C 1 
HETATM 12 O O6 BG6 . . . EA 3 10.407 -41.787 72.663 1 74.01 ? O6 BG6 602 C 1 
HETATM 13 P P BG6 . . . EA 3 11.401 -42.756 71.867 1 74.3 ? P BG6 602 C 1 
HETATM 14 O O1P BG6 . . . EA 3 11.139 -44.135 72.319 1 76.74 ? O1P BG6 602 C 1 
HETATM 15 O O2P BG6 . . . EA 3 12.846 -42.322 72.128 1 74.98 ? O2P BG6 602 C 1 
HETATM 16 O O3P BG6 . . . EA 3 11.092 -42.542 70.393 1 73.13 ? O3P BG6 602 C 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    84 
_model_server_stats.query_time_ms           411 
_model_server_stats.encode_time_ms          17 
_model_server_stats.element_count           16 
#